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Lag0028865 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028865
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr8:32080279..32081162
RNA-Seq ExpressionLag0028865
SyntenyLag0028865
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022145148.1 uncharacterized protein LOC111014662 [Momordica charantia]1.8e-1565Show/hide
Query:  GKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSS
        GKYFK G+F+ A LG NPS+ WRSI+WG+ELF KG RW+IGNG +V    DPWI  EGSS
Subjt:  GKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSS

XP_022145149.1 uncharacterized protein LOC111014663 [Momordica charantia]1.7e-1846.24Show/hide
Query:  GKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRGLWNEDLVKAFF
        GKYF+TG FL A LG++PSY WRSI+W RELF+KGY+W++GNG ++   +D WI  +   + +     I    VA L+  RG WNE  ++  F
Subjt:  GKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRGLWNEDLVKAFF

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]5.5e-2553.76Show/hide
Query:  GKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRGLWNEDLVKAFF
        GKYFKTG FL A LG  PSY WRSI+WGR+LFKKGYRWK+GNG +++ + DPW+P +G+   +   + ++NF+VA L+  RG W+E  V+  F
Subjt:  GKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRGLWNEDLVKAFF

XP_030478314.1 uncharacterized protein LOC115695388 [Cannabis sativa]3.0e-1543.16Show/hide
Query:  YFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDI-QNFTVAQLLNFRGLWNEDLVKAFFYRK
        YF   +FL A +GH  S+ WR I+WGREL  KGYRW IGNGL +    DPW+P  G+  A+R ++++ +  T+  LLN  G W  D +  +F+ +
Subjt:  YFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDI-QNFTVAQLLNFRGLWNEDLVKAFFYRK

XP_030504959.1 uncharacterized protein LOC115719927 [Cannabis sativa]3.0e-1540.38Show/hide
Query:  DYVLTKIMVEWGKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRGLWNEDLV
        D +L++++    +YF T  FL+A++GH+PSYTW+SI WGREL  KG R+KI +G  +    DPWIP+  + K +       N +V+ L+  + +WN +L+
Subjt:  DYVLTKIMVEWGKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRGLWNEDLV

Query:  KAFF
         +FF
Subjt:  KAFF

TrEMBL top hitse value%identityAlignment
A0A6J1CUD6 uncharacterized protein LOC1110146638.3e-1946.24Show/hide
Query:  GKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRGLWNEDLVKAFF
        GKYF+TG FL A LG++PSY WRSI+W RELF+KGY+W++GNG ++   +D WI  +   + +     I    VA L+  RG WNE  ++  F
Subjt:  GKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRGLWNEDLVKAFF

A0A6J1DRA0 uncharacterized protein LOC1110224232.7e-2553.76Show/hide
Query:  GKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRGLWNEDLVKAFF
        GKYFKTG FL A LG  PSY WRSI+WGR+LFKKGYRWK+GNG +++ + DPW+P +G+   +   + ++NF+VA L+  RG W+E  V+  F
Subjt:  GKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRGLWNEDLVKAFF

A0A803PJK4 Uncharacterized protein6.0e-1744.57Show/hide
Query:  KYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRGLWNEDLVKAFF
        +YFK G FLNA LG  PS TWR I+WG+EL + G RWK+GNGL +    DPW+P+  S K +  +    N TV++L++    W+   +K+ F
Subjt:  KYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRGLWNEDLVKAFF

A0A803QH07 Uncharacterized protein3.5e-1743.27Show/hide
Query:  DYVLTKIMVEWGKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRGLWNEDLV
        D +L++++    +YF T  FL+AS+GH+PSYTW+SI WGREL  KG R+K+GNG ++D + DPWIP+  S + +          V+ L+N    WN  L+
Subjt:  DYVLTKIMVEWGKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRGLWNEDLV

Query:  KAFF
          FF
Subjt:  KAFF

A0A803QQH9 Uncharacterized protein6.0e-1742.31Show/hide
Query:  DYVLTKIMVEWGKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRGLWNEDLV
        D +L++++    +YF T  FL+A++GH+PSYTW+SI WGREL  KG R+K+GNG ++    DPWIP   + K I       N  V+ L+  + +WN +L+
Subjt:  DYVLTKIMVEWGKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRGLWNEDLV

Query:  KAFF
         +FF
Subjt:  KAFF

SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003102.4e-0742.86Show/hide
Query:  KYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNE
        +YF     +  S+G  PSY WRSII GREL  +G    IG+G++    +D WI +E
Subjt:  KYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNE

Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein3.0e-0527.66Show/hide
Query:  KYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRG---LWNEDLVKAF
        +YFK    L+A +    SY W S++ G  L KKG R  IG+G N+   +D  I +    + +      +  T+  L   +G    W++  +  F
Subjt:  KYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRVRLDIQNFTVAQLLNFRG---LWNEDLVKAF

AT4G29090.1 Ribonuclease H-like superfamily protein1.5e-0728.35Show/hide
Query:  KYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRV-RLDIQNF-TVAQLLNFRGL-------WNEDLVKAF
        +YF     LNA LG  PS+ W+SI   +E+ ++G R  +GNG ++      W+ ++ +S A+R+ R+  Q + +V+ +L    L       W +D+++  
Subjt:  KYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEGSSKAIRV-RLDIQNF-TVAQLLNFRGL-------WNEDLVKAF

Query:  FYRKRREGYSEHSCQSFEQGGRNHMGS
        F    R+   E        GGR  + S
Subjt:  FYRKRREGYSEHSCQSFEQGGRNHMGS

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.7e-0842.86Show/hide
Query:  KYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNE
        +YF     +  S+G  PSY WRSII GREL  +G    IG+G++    +D WI +E
Subjt:  KYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGGTCATCAAGAATATCCTAAGCATATACGAGCGAGCTTCGGGCAAATAAACAAGATCCAAGGTTCTGGTGGGGCGCTTCAGATTTTGGAAAGAAAATCCATTGG
AGAAGCTGGAAGAGACTATGTTCTCACAAAAATCATGGTGGAATGGGGCAAATATTTTAAAACGGGCCACTTCCTAAATGCATCGTTGGGTCATAATCCTTCATACACAT
GGAGAAGTATCATATGGGGTCGCGAGTTGTTCAAAAAAGGCTATCGATGGAAGATTGGAAATGGATTAAATGTGGATGCAACCATTGATCCGTGGATTCCTAATGAAGGG
TCTAGTAAGGCCATCCGTGTTCGTCTTGATATTCAAAATTTTACTGTGGCTCAACTCTTGAATTTCCGAGGCTTATGGAATGAAGATCTAGTGAAAGCCTTTTTTTATCG
AAAGCGACGCGAGGGCTATTCTGAGCATTCATGTCAATCCTTTGAACAAGGAGGACGAAATCATATGGGATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGGTCATCAAGAATATCCTAAGCATATACGAGCGAGCTTCGGGCAAATAAACAAGATCCAAGGTTCTGGTGGGGCGCTTCAGATTTTGGAAAGAAAATCCATTGG
AGAAGCTGGAAGAGACTATGTTCTCACAAAAATCATGGTGGAATGGGGCAAATATTTTAAAACGGGCCACTTCCTAAATGCATCGTTGGGTCATAATCCTTCATACACAT
GGAGAAGTATCATATGGGGTCGCGAGTTGTTCAAAAAAGGCTATCGATGGAAGATTGGAAATGGATTAAATGTGGATGCAACCATTGATCCGTGGATTCCTAATGAAGGG
TCTAGTAAGGCCATCCGTGTTCGTCTTGATATTCAAAATTTTACTGTGGCTCAACTCTTGAATTTCCGAGGCTTATGGAATGAAGATCTAGTGAAAGCCTTTTTTTATCG
AAAGCGACGCGAGGGCTATTCTGAGCATTCATGTCAATCCTTTGAACAAGGAGGACGAAATCATATGGGATCTTGA
Protein sequenceShow/hide protein sequence
MQGHQEYPKHIRASFGQINKIQGSGGALQILERKSIGEAGRDYVLTKIMVEWGKYFKTGHFLNASLGHNPSYTWRSIIWGRELFKKGYRWKIGNGLNVDATIDPWIPNEG
SSKAIRVRLDIQNFTVAQLLNFRGLWNEDLVKAFFYRKRREGYSEHSCQSFEQGGRNHMGS