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Lag0028877 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028877
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr8:32245676..32246437
RNA-Seq ExpressionLag0028877
SyntenyLag0028877
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022157437.1 uncharacterized protein LOC111024135 [Momordica charantia]6.4e-4045.74Show/hide
Query:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRD-----------------VSNSKLKDGSLIFFGATENECATIKRVLATY
        MNC+ SV ++VL+NG P +EF PNRG+RQ DPLSPYLF++CAEG   L+N +                 +S+    D  L+FF A+   C +IK +L +Y
Subjt:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRD-----------------VSNSKLKDGSLIFFGATENECATIKRVLATY

Query:  EEA-TGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLI
        E+A +GQ +N  KSMF+ SKN  +++ G     L V+ ++ L  YLG+PS   RNK+++F+ +KDRVW  LQ WK KLFS+GG+EVL+
Subjt:  EEA-TGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLI

XP_023880426.1 uncharacterized protein LOC111992797 [Quercus suber]7.9e-3845.64Show/hide
Query:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRDVSNSKLK-----------------DGSLIFFGATENECATIKRVLATY
        M CI+SV+YSV++NG       PNRG+RQ DPLS YLFLLCAEGF  L+N   SN++L                  D S+IF  A  NEC  +K +L  Y
Subjt:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRDVSNSKLK-----------------DGSLIFFGATENECATIKRVLATY

Query:  EEATGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIP
        E A+GQ +N +KS    S N  ++L+ +   ILG         YLG+PS+  R+KK +F+++KD+V   L  WK KL S+GGKE+LIKAVAQ +P
Subjt:  EEATGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIP

XP_023890148.1 uncharacterized protein LOC112002224 [Quercus suber]1.2e-3845.13Show/hide
Query:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRDVSNSKLK-----------------DGSLIFFGATENECATIKRVLATY
        M CI +V+YS+ +NG P     P+RG+RQ DP+SPYLFL+CAEG   LL++ V N KLK                 D SLIF  AT  EC+ I R+L  Y
Subjt:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRDVSNSKLK-----------------DGSLIFFGATENECATIKRVLATY

Query:  EEATGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIP
        EE++GQ +N  K+    S+N   + +G   ++LG    ++ ETYLG+PSL  R+K   F+++K++V   +  WKEKL S  GKEVLIKAVAQ +P
Subjt:  EEATGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIP

XP_023894138.1 uncharacterized protein LOC112006071 [Quercus suber]4.6e-3844.1Show/hide
Query:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRDVSNSKLK-----------------DGSLIFFGATENECATIKRVLATY
        M CI +VTYS+L+NG P  + +P+RGIRQ DPLSPYLFL+C+EG   ++ R   N  +K                 D SL+F  AT  EC  +  +LATY
Subjt:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRDVSNSKLK-----------------DGSLIFFGATENECATIKRVLATY

Query:  EEATGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIP
        E  +GQ +N  K+    SK+   + + +    LGVS  K+ E YLG+P++  R+KK  F K+K RVW  LQ W+ KL S  G+EVLIK+V Q IP
Subjt:  EEATGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIP

XP_030939975.1 uncharacterized protein LOC115964883 [Quercus lobata]1.0e-3743.81Show/hide
Query:  NCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNR-----------------DVSNSKLKDGSLIFFGATENECATIKRVLATYE
        +CI SV++SVLVNG P   F PNRG+RQ DPLSPYLFLLCAEG  +L+ +                  VS+    D SL+F  A   E ++I  +L  YE
Subjt:  NCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNR-----------------DVSNSKLKDGSLIFFGATENECATIKRVLATYE

Query:  EATGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIP
        EA+GQ +N  K+    S N    ++ +  ++LGV+++   E YLG+PS   R KK+ F  +++R+W+ +Q WKE+L S GG+EVLIKAV Q +P
Subjt:  EATGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIP

TrEMBL top hitse value%identityAlignment
A0A2N9FT83 Reverse transcriptase domain-containing protein2.6e-3944.62Show/hide
Query:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRDVSNSKL-----------------KDGSLIFFGATENECATIKRVLATY
        M CI +V+YS+L+NG P+    P+RG+RQ DP+SPYLFL+CAEG   LLN+  S  ++                  D SL+F  AT+ EC  I+ +L  Y
Subjt:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRDVSNSKL-----------------KDGSLIFFGATENECATIKRVLATY

Query:  EEATGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIP
        E+A+GQ +N SK+    S+N  +  +    +ILGV S ++ E YLG+PSL  + K + FS++K+RVW+ ++ WKEKL S  GKE+LIKAV Q IP
Subjt:  EEATGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIP

A0A2N9G656 Reverse transcriptase domain-containing protein4.5e-3943.15Show/hide
Query:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNR-----------------DVSNSKLKDGSLIFFGATENECATIKRVLATY
        M C+ +V+YSVLVNG P    +P+RG+RQ DPLSPYLFL+CAEG   L+ +                  +++    D SL+F  AT  EC  I+ +L++Y
Subjt:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNR-----------------DVSNSKLKDGSLIFFGATENECATIKRVLATY

Query:  EEATGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIPDL
        E A+GQ +N +K+    S N  ++ + +  ++LGV + ++ E YLG+PS   R+KK  F+ +K+RVW  LQ WKEKL S  GKE+LIKAV Q +P+L
Subjt:  EEATGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIPDL

A0A2N9GTU7 Reverse transcriptase domain-containing protein5.3e-4045.13Show/hide
Query:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNR-----------------DVSNSKLKDGSLIFFGATENECATIKRVLATY
        M C++S +YSVLVNG P    +P+RG+RQ DPLSPYLFL+CAEG   LL +                  +S+    D S+IF  A+ +EC T+  VLA Y
Subjt:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNR-----------------DVSNSKLKDGSLIFFGATENECATIKRVLATY

Query:  EEATGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIP
        E A+GQ +N +K+    SKN          ++ G SSS + E YLG+P +  R+K+R F+++KDR+W  LQ WKEKL S  G+E+LIKAV Q IP
Subjt:  EEATGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIP

A0A2N9HR12 Reverse transcriptase domain-containing protein5.3e-4045.13Show/hide
Query:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNR-----------------DVSNSKLKDGSLIFFGATENECATIKRVLATY
        M C++S +YSVLVNG P    +P+RG+RQ DPLSPYLFL+CAEG   LL +                  +S+    D S+IF  A+ +EC T+  VLA Y
Subjt:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNR-----------------DVSNSKLKDGSLIFFGATENECATIKRVLATY

Query:  EEATGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIP
        E A+GQ +N +K+    SKN          ++ G SSS + E YLG+P +  R+K+R F+++KDR+W  LQ WKEKL S  G+E+LIKAV Q IP
Subjt:  EEATGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIP

A0A6J1DUG8 uncharacterized protein LOC1110241353.1e-4045.74Show/hide
Query:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRD-----------------VSNSKLKDGSLIFFGATENECATIKRVLATY
        MNC+ SV ++VL+NG P +EF PNRG+RQ DPLSPYLF++CAEG   L+N +                 +S+    D  L+FF A+   C +IK +L +Y
Subjt:  MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRD-----------------VSNSKLKDGSLIFFGATENECATIKRVLATY

Query:  EEA-TGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLI
        E+A +GQ +N  KSMF+ SKN  +++ G     L V+ ++ L  YLG+PS   RNK+++F+ +KDRVW  LQ WK KLFS+GG+EVL+
Subjt:  EEA-TGQMVNFSKSMFMTSKNVGKKLEGKCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLI

SwissProt top hitse value%identityAlignment
P92555 Uncharacterized mitochondrial protein AtMg012502.4e-0546.81Show/hide
Query:  LVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRDVSNSKL
        ++NG P     P+RG+RQ DPLSPYLF+LC E    L  R     +L
Subjt:  LVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRDVSNSKL

Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)1.7e-0646.81Show/hide
Query:  LVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRDVSNSKL
        ++NG P     P+RG+RQ DPLSPYLF+LC E    L  R     +L
Subjt:  LVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRDVSNSKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTGCATCAACTCTGTGACTTATTCTGTGTTGGTAAATGGGTATCCAAGCGAGGAATTCAGACCAAACAGAGGGATCAGACAAGAGGATCCGTTATCCCCCTATCT
TTTCCTCTTGTGTGCTGAAGGCTTTTTCACTCTGCTGAACAGGGACGTTTCTAACTCTAAGCTTAAAGATGGCAGCCTCATATTCTTTGGAGCTACCGAGAATGAATGCG
CCACTATCAAAAGGGTGTTAGCCACGTATGAGGAAGCCACGGGTCAAATGGTGAACTTCTCCAAATCGATGTTCATGACAAGCAAAAATGTAGGAAAGAAGCTGGAAGGA
AAATGTGGCAGCATCCTTGGTGTTTCTTCTTCTAAAGAGCTTGAAACTTACCTTGGAATGCCCTCTTTAAACGATAGAAACAAAAAGCGGTTGTTTTCCAAAGTAAAGGA
CAGGGTCTGGAATACTCTTCAAAGTTGGAAGGAAAAATTGTTCTCTGTTGGGGGTAAAGAGGTTTTGATAAAGGCGGTCGCCCAAGTCATTCCGGATCTTGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATTGCATCAACTCTGTGACTTATTCTGTGTTGGTAAATGGGTATCCAAGCGAGGAATTCAGACCAAACAGAGGGATCAGACAAGAGGATCCGTTATCCCCCTATCT
TTTCCTCTTGTGTGCTGAAGGCTTTTTCACTCTGCTGAACAGGGACGTTTCTAACTCTAAGCTTAAAGATGGCAGCCTCATATTCTTTGGAGCTACCGAGAATGAATGCG
CCACTATCAAAAGGGTGTTAGCCACGTATGAGGAAGCCACGGGTCAAATGGTGAACTTCTCCAAATCGATGTTCATGACAAGCAAAAATGTAGGAAAGAAGCTGGAAGGA
AAATGTGGCAGCATCCTTGGTGTTTCTTCTTCTAAAGAGCTTGAAACTTACCTTGGAATGCCCTCTTTAAACGATAGAAACAAAAAGCGGTTGTTTTCCAAAGTAAAGGA
CAGGGTCTGGAATACTCTTCAAAGTTGGAAGGAAAAATTGTTCTCTGTTGGGGGTAAAGAGGTTTTGATAAAGGCGGTCGCCCAAGTCATTCCGGATCTTGGTTAG
Protein sequenceShow/hide protein sequence
MNCINSVTYSVLVNGYPSEEFRPNRGIRQEDPLSPYLFLLCAEGFFTLLNRDVSNSKLKDGSLIFFGATENECATIKRVLATYEEATGQMVNFSKSMFMTSKNVGKKLEG
KCGSILGVSSSKELETYLGMPSLNDRNKKRLFSKVKDRVWNTLQSWKEKLFSVGGKEVLIKAVAQVIPDLG