| GenBank top hits | e value | %identity | Alignment |
|---|
| GAU19483.1 hypothetical protein TSUD_77270 [Trifolium subterraneum] | 8.0e-109 | 37.96 | Show/hide |
Query: TVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWLYNSMT
+VKL+R NY LWK+L LP +R +L+G++ G + CP +F+++S +S ++ N + W D+ LLGW+ NSMT
Subjt: TVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWLYNSMT
Query: PEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQGRIGI
E+ATQ++ E +K LW Q L G +R++ YL+ F RKG +KM DYL MK+ D L AG+PV T LI Q L GLD EYN VV + + +
Subjt: PEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQGRIGI
Query: SWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQICGKNGHSALACYQ
SW ++Q +LL FE R+E N+ + T +A N + + SS N + +N + GGR RG+ +G N CQ+CG + H A+ C+
Subjt: SWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQICGKNGHSALACYQ
Query: RFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVTADYNNMMHTSEYG---------------
RFDK + +R+ + G++ Q + N F+AS +V D +WY DSGASNHVT +E+
Subjt: RFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVTADYNNMMHTSEYG---------------
Query: ----------------------AKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQL-GTRITRSALGSVGSNLKSANKSVSHSAFI
KNL+SVSKLA DNN+ +EF + C VKD T KV+L+G+LKDGLYQL GT+ SA SV
Subjt: ----------------------AKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQL-GTRITRSALGSVGSNLKSANKSVSHSAFI
Query: TSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVHFLDDF
K WHRRLGHP+ K+L+ +++ C + V +D F+FCEAC++GK H LPF +S SHA P +L+HTD+WGPA +M++ G++YYVHF+DDF
Subjt: TSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVHFLDDF
Query: SRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
SRF W+YPLK KS+TV F F + + QFNK +KV+Q D GGEYK V
Subjt: SRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
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| PNX76291.1 gag/pol polyprotein - maize retrotransposon Hopscotch, partial [Trifolium pratense] | 1.6e-109 | 37.42 | Show/hide |
Query: LNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWL
L +VKL+R NY LW+++ LP +R RL+G++ G K CP +F++ + + NPE+E W D+ LLGWL
Subjt: LNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWL
Query: YNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQ
NSMT +ATQ++ E + LW Q L G +R++ YL+ F TRKG +KM DYL MK+ AD L AG+P+ T LI Q L GLD EYN VV +
Subjt: YNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQ
Query: GRIGISWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQICGKNGHSA
+ +SW ++Q +LL FE R+E NS + T +A N+A K + + + NS+ N + NN G R GR G + + CQ+CG + H A
Subjt: GRIGISWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQICGKNGHSA
Query: LACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVTADYNNMMHTSEYG----------
+ C+ RFDK + + + NN + G + N F+AS ++ D +WY DSGASNHVT + + SE+
Subjt: LACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVTADYNNMMHTSEYG----------
Query: ---------------------------AKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQLGTRITRSALGSVGSNLKSANKSVSH
KNL+SVSKLA DNN+ +EF + C VKD T K +LRG+LKDGLYQL +
Subjt: ---------------------------AKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQLGTRITRSALGSVGSNLKSANKSVSH
Query: SAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVHF
S Y ++ K WHR+LGHP+ K+L+ ++K CN+ +S +D F+FCEAC++GK H LPF S SHA +L+HTD+WGPA ++S+ G++YYVHF
Subjt: SAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVHF
Query: LDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
+DDF+RF W+YPLK KSDT F F M++ QF+K +K +Q D GGEYK V
Subjt: LDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
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| PNX78574.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Trifolium pratense] | 7.5e-107 | 38.39 | Show/hide |
Query: NQLLNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLL
N L ++I +V L+R N+ LWK+L LP +R RL+G++ G K CP +F++++ E SG+ INP++ W D+ +L
Subjt: NQLLNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLL
Query: GWLYNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVA
GWL N+MT A+Q++ E +K LW Q L +R+ YLR F TRKG KM DYL MK AD L AGSP+ LI Q L GLD +YN +V
Subjt: GWLYNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVA
Query: IIQGRIGISWSEMQVELLVFEKRLETQNS----QRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQIC
+ +I +SW ++Q +LL FE RL+ NS R++TT N+A K + N + G RN GR G +N +CQ+C
Subjt: IIQGRIGISWSEMQVELLVFEKRLETQNS----QRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQIC
Query: GKNGHSALACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVTADYNNMMHTSEYG---
K+GH+A+ C R+DK + G S + N NV + N F+AS D WY DSGASNHVT + +E
Subjt: GKNGHSALACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVTADYNNMMHTSEYG---
Query: ----------------------------------AKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQLGTRITRSALGSVGSNLKS
KNL+SVSKL DNN+ +EF D C VKD T KV+LRG+LKDGLYQL S GS+
Subjt: ----------------------------------AKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQLGTRITRSALGSVGSNLKS
Query: ANKSVSHSAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDG
NK +Y +V K WHR+LGHPS +L+ ++K CN+ S +D F FCEAC+ GKSH LPF +S SHA +LIHTD+WGPA + S G
Subjt: ANKSVSHSAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDG
Query: YRYYVHFLDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
++YYVHF+DD SRF W+YPLK KSDT+ F F M++ QFNK +K++Q D GGE+K V
Subjt: YRYYVHFLDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
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| PNX94503.1 putative retrotransposon Ty1-copia subclass protein, partial [Trifolium pratense] | 3.4e-107 | 38.13 | Show/hide |
Query: LNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWL
L +VKL+R N+ LWK+L LP +R + +G++ G K CP +F+ T + N T INP+Y+ W D+ LLGWL
Subjt: LNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWL
Query: YNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQ
NSMT ++ATQV+ E +K LW Q L G +R+ YL+ F T K +KM YL MK+ AD L AGSP+ + L+ Q L GLD EYN VV +
Subjt: YNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQ
Query: GRIGISWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQICGKNGHSA
+ ISW + Q +LL FE RL+ N+ + SA + G + GSR N + G G+GR + R +CQICGK GH+A
Subjt: GRIGISWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQICGKNGHSA
Query: LACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVT-----------------------
CY RFDK + T N++ G S + F+ASP D WY DSGASNHVT
Subjt: LACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVT-----------------------
Query: ---------------ADYNNMMHTSEYGAKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQLGTRITRSALGSVGSNLKSANKSVS
+ N+++ E KNL+SVSKL DNN +EF + C VKD T K +L+G LKDGLYQL SANK
Subjt: ---------------ADYNNMMHTSEYGAKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQLGTRITRSALGSVGSNLKSANKSVS
Query: HSAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVH
T+ + K +WHR+LGHP+ K+L ++K N+ +S +D F FCEAC+FGK H LPF S SHA P DLIHTD+WGPA ++S ++YYVH
Subjt: HSAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVH
Query: FLDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
FLDDFSRF W++PLK KS+T+ F F +++ QFNK +KV++ D GGEYK V
Subjt: FLDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
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| PNY01489.1 copia-like polyprotein, partial [Trifolium pratense] | 2.4e-105 | 36.66 | Show/hide |
Query: LNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWL
L I +VKL+R NY LWK+L LP +R + +G++ G K CP +F++ S+ + +NP+++ W+ D+ LLGWL
Subjt: LNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWL
Query: YNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQ
NSM ++ATQ++ E +K LW Q L G +++ YL+ F TRKG +KM +YL MK+ +D L +GSP+ L+ Q L GLD EYN VV +
Subjt: YNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQ
Query: GRIGISWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQICGKNGHSA
+I +SW ++Q +LL FE RL+ N+ T SA N A K + + R + + G RG+GR + CQ+C GH+A
Subjt: GRIGISWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQICGKNGHSA
Query: LACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVTADYNNMMHTSEYG----------
+ C RFD+ + G RN ST + + G S F+ASP D WY DSGASNHVT + +E+
Subjt: LACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVTADYNNMMHTSEYG----------
Query: ---------------------------AKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQLGTRITRSALGSVGSNLKSANKSVSH
KNL+SVSKL DNN+ +EF A+ C VKD T + +L+G LKDGLYQL VS
Subjt: ---------------------------AKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQLGTRITRSALGSVGSNLKSANKSVSH
Query: SAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVHF
+ +Y +V K WHR+LGHP+ K+L ++K CN+ +S +D F+FCEAC+FGK H LPF +S SH P LIH+D+WGPA ++S G++YYVHF
Subjt: SAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVHF
Query: LDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
+DDFSRF W++PLK KSDT+ F F + + QFNK +K++Q D GGEYK V
Subjt: LDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2K3LCM1 Gag/pol polyprotein-maize retrotransposon Hopscotch (Fragment) | 7.8e-110 | 37.42 | Show/hide |
Query: LNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWL
L +VKL+R NY LW+++ LP +R RL+G++ G K CP +F++ + + NPE+E W D+ LLGWL
Subjt: LNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWL
Query: YNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQ
NSMT +ATQ++ E + LW Q L G +R++ YL+ F TRKG +KM DYL MK+ AD L AG+P+ T LI Q L GLD EYN VV +
Subjt: YNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQ
Query: GRIGISWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQICGKNGHSA
+ +SW ++Q +LL FE R+E NS + T +A N+A K + + + NS+ N + NN G R GR G + + CQ+CG + H A
Subjt: GRIGISWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQICGKNGHSA
Query: LACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVTADYNNMMHTSEYG----------
+ C+ RFDK + + + NN + G + N F+AS ++ D +WY DSGASNHVT + + SE+
Subjt: LACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVTADYNNMMHTSEYG----------
Query: ---------------------------AKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQLGTRITRSALGSVGSNLKSANKSVSH
KNL+SVSKLA DNN+ +EF + C VKD T K +LRG+LKDGLYQL +
Subjt: ---------------------------AKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQLGTRITRSALGSVGSNLKSANKSVSH
Query: SAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVHF
S Y ++ K WHR+LGHP+ K+L+ ++K CN+ +S +D F+FCEAC++GK H LPF S SHA +L+HTD+WGPA ++S+ G++YYVHF
Subjt: SAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVHF
Query: LDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
+DDF+RF W+YPLK KSDT F F M++ QF+K +K +Q D GGEYK V
Subjt: LDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
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| A0A2K3LJ49 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 3.6e-107 | 38.39 | Show/hide |
Query: NQLLNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLL
N L ++I +V L+R N+ LWK+L LP +R RL+G++ G K CP +F++++ E SG+ INP++ W D+ +L
Subjt: NQLLNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLL
Query: GWLYNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVA
GWL N+MT A+Q++ E +K LW Q L +R+ YLR F TRKG KM DYL MK AD L AGSP+ LI Q L GLD +YN +V
Subjt: GWLYNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVA
Query: IIQGRIGISWSEMQVELLVFEKRLETQNS----QRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQIC
+ +I +SW ++Q +LL FE RL+ NS R++TT N+A K + N + G RN GR G +N +CQ+C
Subjt: IIQGRIGISWSEMQVELLVFEKRLETQNS----QRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQIC
Query: GKNGHSALACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVTADYNNMMHTSEYG---
K+GH+A+ C R+DK + G S + N NV + N F+AS D WY DSGASNHVT + +E
Subjt: GKNGHSALACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVTADYNNMMHTSEYG---
Query: ----------------------------------AKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQLGTRITRSALGSVGSNLKS
KNL+SVSKL DNN+ +EF D C VKD T KV+LRG+LKDGLYQL S GS+
Subjt: ----------------------------------AKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQLGTRITRSALGSVGSNLKS
Query: ANKSVSHSAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDG
NK +Y +V K WHR+LGHPS +L+ ++K CN+ S +D F FCEAC+ GKSH LPF +S SHA +LIHTD+WGPA + S G
Subjt: ANKSVSHSAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDG
Query: YRYYVHFLDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
++YYVHF+DD SRF W+YPLK KSDT+ F F M++ QFNK +K++Q D GGE+K V
Subjt: YRYYVHFLDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
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| A0A2K3MUJ9 Putative retrotransposon Ty1-copia subclass protein (Fragment) | 1.6e-107 | 38.13 | Show/hide |
Query: LNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWL
L +VKL+R N+ LWK+L LP +R + +G++ G K CP +F+ T + N T INP+Y+ W D+ LLGWL
Subjt: LNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWL
Query: YNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQ
NSMT ++ATQV+ E +K LW Q L G +R+ YL+ F T K +KM YL MK+ AD L AGSP+ + L+ Q L GLD EYN VV +
Subjt: YNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQ
Query: GRIGISWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQICGKNGHSA
+ ISW + Q +LL FE RL+ N+ + SA + G + GSR N + G G+GR + R +CQICGK GH+A
Subjt: GRIGISWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQICGKNGHSA
Query: LACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVT-----------------------
CY RFDK + T N++ G S + F+ASP D WY DSGASNHVT
Subjt: LACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVT-----------------------
Query: ---------------ADYNNMMHTSEYGAKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQLGTRITRSALGSVGSNLKSANKSVS
+ N+++ E KNL+SVSKL DNN +EF + C VKD T K +L+G LKDGLYQL SANK
Subjt: ---------------ADYNNMMHTSEYGAKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQLGTRITRSALGSVGSNLKSANKSVS
Query: HSAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVH
T+ + K +WHR+LGHP+ K+L ++K N+ +S +D F FCEAC+FGK H LPF S SHA P DLIHTD+WGPA ++S ++YYVH
Subjt: HSAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVH
Query: FLDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
FLDDFSRF W++PLK KS+T+ F F +++ QFNK +KV++ D GGEYK V
Subjt: FLDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
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| A0A2Z6MBG6 Integrase catalytic domain-containing protein | 3.9e-109 | 37.96 | Show/hide |
Query: TVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWLYNSMT
+VKL+R NY LWK+L LP +R +L+G++ G + CP +F+++S +S ++ N + W D+ LLGW+ NSMT
Subjt: TVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWLYNSMT
Query: PEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQGRIGI
E+ATQ++ E +K LW Q L G +R++ YL+ F RKG +KM DYL MK+ D L AG+PV T LI Q L GLD EYN VV + + +
Subjt: PEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQGRIGI
Query: SWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQICGKNGHSALACYQ
SW ++Q +LL FE R+E N+ + T +A N + + SS N + +N + GGR RG+ +G N CQ+CG + H A+ C+
Subjt: SWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLLCQICGKNGHSALACYQ
Query: RFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVTADYNNMMHTSEYG---------------
RFDK + +R+ + G++ Q + N F+AS +V D +WY DSGASNHVT +E+
Subjt: RFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVTADYNNMMHTSEYG---------------
Query: ----------------------AKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQL-GTRITRSALGSVGSNLKSANKSVSHSAFI
KNL+SVSKLA DNN+ +EF + C VKD T KV+L+G+LKDGLYQL GT+ SA SV
Subjt: ----------------------AKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQL-GTRITRSALGSVGSNLKSANKSVSHSAFI
Query: TSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVHFLDDF
K WHRRLGHP+ K+L+ +++ C + V +D F+FCEAC++GK H LPF +S SHA P +L+HTD+WGPA +M++ G++YYVHF+DDF
Subjt: TSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVHFLDDF
Query: SRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
SRF W+YPLK KS+TV F F + + QFNK +KV+Q D GGEYK V
Subjt: SRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYKKV
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| A0A803PEH4 Uncharacterized protein | 1.4e-114 | 38.37 | Show/hide |
Query: SSSLVNMAASASVPIFSSPPLNQLLNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSS
+SS N ++ +P +PP LNQ ++KL+R NY LWK + +R +RL G+LSG CP +F+ V T VT
Subjt: SSSLVNMAASASVPIFSSPPLNQLLNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSS
Query: AVTLTINPEYESWLVVDKLLLGWLYNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVP
NPEYE+W++ D+LL+GWLY+SMT +AT+V+G +A +L ++ L+G S+++ D R + Q TRKGS M++YLR K+ ++ L AG P P
Subjt: AVTLTINPEYESWLVVDKLLLGWLYNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVP
Query: TRSLISQVLLGLDEEYNVVVAIIQGRIGISWSEMQVELLVFEKRLE-----TQNSQRSSTTFGSATSVNMATKGNGQS---GSRQQNSSINRQQYNNKQH
L++ VL GLD EY +V I+ R +W E+Q LL F+ ++E T NS ++++ S+ NMA K N G + QN+S N +
Subjt: TRSLISQVLLGLDEEYNVVVAIIQGRIGISWSEMQVELLVFEKRLE-----TQNSQRSSTTFGSATSVNMATKGNGQS---GSRQQNSSINRQQYNNKQH
Query: GGGGRNRGQGRWNGNNNNRLLCQICGKNGHSALACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYV
G R RG+GR G + +R CQ+ GK GH+A CY RFD+ ++G N N + G T N + F+A+PE + W+
Subjt: GGGGRNRGQGRWNGNNNNRLLCQICGKNGHSALACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYV
Query: DSGASNHVTADYNNMMHTSEYG------------------------------------------AKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVV
DSGASNH+T+D N+ +Y AKNLVSVSKLA DNNV IEF+++ CLVKD T KV+
Subjt: DSGASNHVTADYNNMMHTSEYG------------------------------------------AKNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVV
Query: LRGVLKDGLYQLGTRITRSALGSVGSNLKSANKSVSHSAFITSGIYANVLVSK-SVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDL
L GVLKD LYQL + T+S+ SN SA ++S + + ++L+S+ V HRRLGHPS+K+LN +++ N+ VS N + C+AC++GK+H L
Subjt: LRGVLKDGLYQLGTRITRSALGSVGSNLKSANKSVSHSAFITSGIYANVLVSK-SVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDL
Query: PFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVHFLDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYK
PF +S + A + DLIHTDLWGPA + S + YY+HF+DD+SR+ W+YPLKLKSD +A F F +++ QF K +K L+SD+GGEYK
Subjt: PFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVHFLDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEYK
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| SwissProt top hits | e value | %identity | Alignment |
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| P04146 Copia protein | 2.7e-14 | 25 | Show/hide |
Query: WNGNNNNRLLCQICGKNGHSALAC--YQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVT
+ GN+ ++ C CG+ GH C Y+R N +N Q + AFM + N + + + +DSGAS+H+
Subjt: WNGNNNNRLLCQICGKNGHSALAC--YQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVT
Query: ADYNNMMHTSEYGAKNLVSVSK--------------LAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLY----QLGTRITRSALGSVGSNLKSANK
D + + E ++V+K L D+ + +E D K+ + + ++ + + G+ + G I+++ L V ++ N
Subjt: ADYNNMMHTSEYGAKNLVSVSK--------------LAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLY----QLGTRITRSALGSVGSNLKSANK
Query: SVSHSAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKK---------CNLPVSANDIFNFCEACKFGKSHDLPFP--NSKSHAIAPFDLIHTDLWGP
V + F I A + +WH R GH S L I +K NL +S CE C GK LPF K+H P ++H+D+ GP
Subjt: SVSHSAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKK---------CNLPVSANDIFNFCEACKFGKSHDLPFP--NSKSHAIAPFDLIHTDLWGP
Query: ALVMSTDGYRYYVHFLDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEY
++ D Y+V F+D F+ + Y +K KSD + F F+ + FN V L DNG EY
Subjt: ALVMSTDGYRYYVHFLDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEY
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.5e-28 | 23.54 | Show/hide |
Query: ESWLVVDKLLLGWLYNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYL-RHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVL
E W +D+ + ++ +V +I + A+ +W ++ L+ ++ + YL + ++ +L V L G + +L
Subjt: ESWLVVDKLLLGWLYNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYL-RHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVL
Query: LGLDEEY-NVVVAIIQGRIGISWSEMQVELLVFEK-RLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGN
L Y N+ I+ G+ I ++ LL+ EK R + +N ++ T G S ++ G+SG+R G +NR + R
Subjt: LGLDEEY-NVVVAIIQGRIGISWSEMQVELLVFEK-RLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGN
Query: NNNRLLCQICGKNGHSALACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVT--ADYN
C C + GH C P+ + ++G N N + F+ + ++ PE+ W VD+ AS+H T D
Subjt: NNNRLLCQICGKNGHSALACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVT--ADYN
Query: NMMHTSEYGAKNL--VSVSKLAQDNNVDIEFHADSCLV-KDI-HTDKV---VLRGVL--KDGLYQLGT----RITRSAL----GSVGSNLKSANKSVSHS
++G + S SK+A ++ I+ + LV KD+ H + ++ G+ +DG R+T+ +L G L N +
Subjt: NMMHTSEYGAKNL--VSVSKLAQDNNVDIEFHADSCLV-KDI-HTDKV---VLRGVL--KDGLYQLGT----RITRSAL----GSVGSNLKSANKSVSHS
Query: AFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVHFL
A +S +WH+R+GH S K L + KK + + C+ C FGK H + F S + DL+++D+ GP + S G +Y+V F+
Subjt: AFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVHFL
Query: DDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEY
DD SR +WVY LK K F F +++ + + +K L+SDNGGEY
Subjt: DDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEY
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 6.5e-13 | 27.09 | Show/hide |
Query: MHTSEYGAKNLVSVSKLAQDNNVDIEFHADSCLVKDI--HTDKVVLRGVLKDG-------LYQLGTRITRSALGSVGSNLKSANKSVSHSAFITSGIYAN
+HT A +L+S+S+LA N +C ++ +D VL ++K G Y + + I++ + +V + KS NK Y
Subjt: MHTSEYGAKNLVSVSKLAQDNNVDIEFHADSCLVKDI--HTDKVVLRGVLKDG-------LYQLGTRITRSALGSVGSNLKSANKSVSHSAFITSGIYAN
Query: VLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNF-------CEACKFGKS----HDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVHF
L+ HR LGH + + + +KK + + C C GKS H + PF +HTD++GP + Y++ F
Subjt: VLVSKSVWHRRLGHPSLKILNSIVKKCNLPVSANDIFNF-------CEACKFGKS----HDLPFPNSKSHAIAPFDLIHTDLWGPALVMSTDGYRYYVHF
Query: LDDFSRFVWVYPL--KLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEY
D+ +RF WVYPL + + + FT + IK QFN V V+Q D G EY
Subjt: LDDFSRFVWVYPL--KLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEY
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 2.5e-49 | 26.4 | Show/hide |
Query: MAASASVPIFSSPPLNQLLNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTI
MAA A + ++ + +N KL NYL+W Y L G L G P + T A P +
Subjt: MAASASVPIFSSPPLNQLLNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTI
Query: NPEYESWLVVDKLLLGWLYNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLIS
NP+Y W DKL+ + +++ V V A +W +++++ S LR +Q KG+ + DY++ + + D L G P+ +
Subjt: NPEYESWLVVDKLLLGWLYNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLIS
Query: QVLLGLDEEYNVVVAIIQGR-IGISWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWN
+VL L EEY V+ I + + +E+ LL E ++ +S +A S T N + + N NR NN + + ++
Subjt: QVLLGLDEEYNVVVAIIQGR-IGISWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWN
Query: GNNNNRL----LCQICGKNGHSALACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQ-NTNPFIASPETVIDPNWYVDSGASNHV
NNN CQICG GHSA C Q Q+ +S S P F Q N + SP + NW +DSGA++H+
Subjt: GNNNNRL----LCQICGKNGHSALACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQ-NTNPFIASPETVIDPNWYVDSGASNHV
Query: TADYNNM-MHTSEYGA----------------------------------------KNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGL
T+D+NN+ +H G KNL+SV +L N V +EF S VKD++T +L+G KD L
Subjt: TADYNNM-MHTSEYGA----------------------------------------KNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGL
Query: YQLGTRITRSALGSVGSNLKSANKSVSHSAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPV-SANDIFNFCEACKFGKSHDLPFPNSKSHA
Y+ ++ S S + +HS+ WH RLGHP+ ILNS++ +L V + + F C C KS+ +PF S ++
Subjt: YQLGTRITRSALGSVGSNLKSANKSVSHSAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPV-SANDIFNFCEACKFGKSHDLPFPNSKSHA
Query: IAPFDLIHTDLWGPALVMSTDGYRYYVHFLDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEY
P + I++D+W + ++S D YRYYV F+D F+R+ W+YPLK KS TF F +++ +F + SDNGGE+
Subjt: IAPFDLIHTDLWGPALVMSTDGYRYYVHFLDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEY
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 7.4e-49 | 26.44 | Show/hide |
Query: LNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWL
+N KL NYL+W Y L G L G P P + T AVP +NP+Y W DKL+ +
Subjt: LNQITTVKLERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWL
Query: YNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQ
+++ V V A +W +++++ S LR + + D L G P+ + +VL L ++Y V+ I
Subjt: YNSMTPEVATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQ
Query: GR-IGISWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLL---CQICGKN
+ S +E+ L+ E +L NS + N+ T N + Q N NR NN + G + N + CQIC
Subjt: GR-IGISWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGRNRGQGRWNGNNNNRLL---CQICGKN
Query: GHSALACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVTADYNNMMHTSEYGA-----
GHSA C Q Q Q TS +P P+A + +P+ A+ NW +DSGA++H+T+D+NN+ Y
Subjt: GHSALACYQRFDKQFVGPSQNVNRNVSTGGNNFQNGGTSQMSPVAPQAFMTTQNTNPFIASPETVIDPNWYVDSGASNHVTADYNNMMHTSEYGA-----
Query: ------------------------------------KNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQLGTRITRSALGSVGSNLK
KNL+SV +L N V +EF S VKD++T +L+G KD LY+ +++ S
Subjt: ------------------------------------KNLVSVSKLAQDNNVDIEFHADSCLVKDIHTDKVVLRGVLKDGLYQLGTRITRSALGSVGSNLK
Query: SANKSVSHSAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPV-SANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMST
S +HS+ WH RLGHPSL ILNS++ +LPV + + C C KSH +PF NS + P + I++D+W + ++S
Subjt: SANKSVSHSAFITSGIYANVLVSKSVWHRRLGHPSLKILNSIVKKCNLPV-SANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWGPALVMST
Query: DGYRYYVHFLDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEY
D YRYYV F+D F+R+ W+YPLK KS TF F ++++ +F + L SDNGGE+
Subjt: DGYRYYVHFLDDFSRFVWVYPLKLKSDTVATFTHFITMIKTQFNKIVKVLQSDNGGEY
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162) | 6.7e-05 | 23.36 | Show/hide |
Query: LERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWLYNSMTP-E
+E NY W+ L L + S+ + GH+ G L N +W D ++ LY ++TP +
Subjt: LERGNYLLWKNLTLPNLRSYRLEGHLSGDKPCPSKFLSTSQVITTDVTNEAGSSISGAVPLENSGQSSAVTLTINPEYESWLVVDKLLLGWLYNSMTP-E
Query: VATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQGRIGI-S
+ ++D+W I+ F A L + G +++ADY R MK AD+L PV R+L+ VL GL+ +++ ++ +I+ R S
Subjt: VATQVIGYENAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNVVVAIIQGRIGI-S
Query: WSEMQVELLVFEKRLE-------TQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGR
+ + L E RL+ T SS+T + + T N Q Q R + NN G GGR
Subjt: WSEMQVELLVFEKRLE-------TQNSQRSSTTFGSATSVNMATKGNGQSGSRQQNSSINRQQYNNKQHGGGGR
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| AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162) | 4.1e-10 | 28.64 | Show/hide |
Query: WLVVDKLLLGWLYNSMTPEVATQVIGYE-NAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLG
W D L+ W+Y ++T + +I A+DLW +++ LF A + + T L + +Y + +KS +D L SP+ R L+ +L G
Subjt: WLVVDKLLLGWLYNSMTPEVATQVIGYE-NAKDLWAAIQELFGIQSRAEEDYLRHVFQQTRKGSLKMADYLRVMKSHADNLGQAGSPVPTRSLISQVLLG
Query: LDEEYNVVVAIIQGRIGI-SWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQ----NSSINRQQYNNKQHGGGGRNRGQGRWNG
L E+Y+ ++ +I+ + S++E + LL+ E RL ++ S T + S + T Q Q+ NS++ R + K GGG GR+N
Subjt: LDEEYNVVVAIIQGRIGI-SWSEMQVELLVFEKRLETQNSQRSSTTFGSATSVNMATKGNGQSGSRQQ----NSSINRQQYNNKQHGGGGRNRGQGRWNG
Query: NNNNRL
NNN RL
Subjt: NNNNRL
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| ATMG00300.1 Gag-Pol-related retrotransposon family protein | 1.0e-08 | 37.84 | Show/hide |
Query: VWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWG-PALVMS
+WH RL H S + + +VKK L S FCE C +GK+H + F + P D +H+DLWG P++ +S
Subjt: VWHRRLGHPSLKILNSIVKKCNLPVSANDIFNFCEACKFGKSHDLPFPNSKSHAIAPFDLIHTDLWG-PALVMS
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