; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028890 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028890
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr8:32345548..32346478
RNA-Seq ExpressionLag0028890
SyntenyLag0028890
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]3.0e-4240.89Show/hide
Query:  EATRCRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDER
        EA RCR F  TL G AR WF ++ R SI S K LARAFVTQ +G   R +P   LLT+KQ   ESL+DY+ +FN + L VEG  D  +L+  +SG++DE 
Subjt:  EATRCRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDER

Query:  LLNSIGERQPQTI--------------------HDPGTKRGRSRQEQSSTNGRG-RPEAKEPQGYAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPEK
        L  S G+R P T                      +P  KR   ++E+S    +G R E ++     +P   F++YTP T  +EQVL  IK   LLK PE+
Subjt:  LLNSIGERQPQTI--------------------HDPGTKRGRSRQEQSSTNGRG-RPEAKEPQGYAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPEK

Query:  LRSNPDRRNRNKYCMSHGDHDHTTRECIQLRNKIETMIREGYLKEFV
        ++++  +R++ +YC+ H DH H T++C  L+ ++E +IR GYLKE+V
Subjt:  LRSNPDRRNRNKYCMSHGDHDHTTRECIQLRNKIETMIREGYLKEFV

XP_030930616.1 uncharacterized protein LOC115956348 [Quercus lobata]3.5e-3537.85Show/hide
Query:  CRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDERLLNS
        CR F  TL GLAR WFSKIP  S+ S +EL++ FV   +G    +    +LLT++QG  ESL+ +I +FN + L V+  DD   L    +G+  +  ++ 
Subjt:  CRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDERLLNS

Query:  IGERQPQTI-------------HDPGTKRGRSRQEQSSTN-----------GRGRPEAKEPQGYAEP--KAIFDRYTPLTASLEQVLAAIKYTNLLKRPE
        + E++PQ++              D    + R R E+  TN            +GR E ++ +   +P   A   +YT L   LEQVL  IK    LK PE
Subjt:  IGERQPQTI-------------HDPGTKRGRSRQEQSSTN-----------GRGRPEAKEPQGYAEP--KAIFDRYTPLTASLEQVLAAIKYTNLLKRPE

Query:  KLRSNPDRRNRNKYCMSHGDHDHTTRECIQLRNKIETMIREGYLKEFVGSD
        K+R +P++RNRNKYC  H DH H T EC  L+ +IE +IR+G LK F+G D
Subjt:  KLRSNPDRRNRNKYCMSHGDHDHTTRECIQLRNKIETMIREGYLKEFVGSD

XP_030955724.1 uncharacterized protein LOC115977839 [Quercus lobata]3.4e-3840.68Show/hide
Query:  CRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDERLLNS
        CR F  TL G AR WFSKIP  S+ S +EL++ FV   +G    ++   +LLT++QG  ESL+ +I +FN + L V+  DD   L    +G+  +  ++ 
Subjt:  CRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDERLLNS

Query:  IGERQPQTIHDPGTKRGRSRQ-------EQSSTNGRGRPE-AKEPQG-YAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPEKLRSNPDRRNRNKYCMS
        + E++PQT+ +   KR    +       EQ+    +GR E  KE  G    P      YTPL A L QVL  IK    LK PEK++ +P++RN+NKYC  
Subjt:  IGERQPQTIHDPGTKRGRSRQ-------EQSSTNGRGRPE-AKEPQG-YAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPEKLRSNPDRRNRNKYCMS

Query:  HGDHDHTTRECIQLRNKIETMIREGYLKEFVGSDRS
        H DH H T EC  L+ +IE +IR+G LK FVG DR+
Subjt:  HGDHDHTTRECIQLRNKIETMIREGYLKEFVGSDRS

XP_030958629.1 uncharacterized protein LOC115980536 [Quercus lobata]1.6e-3538.34Show/hide
Query:  CRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDERLLNS
        CR F  TL G AR WFSKIP  S+ + +EL++ FV   +G    ++   +LLT++QG  ESL+ +I +FN + L V+  DD   L    +G+  +  ++ 
Subjt:  CRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDERLLNS

Query:  IGERQPQT----IHDP-----------GTKRGRSRQ---------EQSSTNGRGRPE-AKEPQG-YAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPE
        + E++PQT    +H               KR R+ +         EQ+    +GR E  KE  G    P      YTPL A L QVL  IK    LK PE
Subjt:  IGERQPQT----IHDP-----------GTKRGRSRQ---------EQSSTNGRGRPE-AKEPQG-YAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPE

Query:  KLRSNPDRRNRNKYCMSHGDHDHTTRECIQLRNKIETMIREGYLKEFVGSDRS
        K++ +P++RN+NKYC  H DH H T EC  L+ +IE +IR+G LK FVG DR+
Subjt:  KLRSNPDRRNRNKYCMSHGDHDHTTRECIQLRNKIETMIREGYLKEFVGSDRS

XP_030958631.1 uncharacterized protein LOC115980538 [Quercus lobata]1.6e-3538.34Show/hide
Query:  CRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDERLLNS
        CR F  TL G AR WFSKIP  S+ + +EL++ FV   +G    ++   +LLT++QG  ESL+ +I +FN + L V+  DD   L    +G+  +  ++ 
Subjt:  CRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDERLLNS

Query:  IGERQPQT----IHDP-----------GTKRGRSRQ---------EQSSTNGRGRPE-AKEPQG-YAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPE
        + E++PQT    +H               KR R+ +         EQ+    +GR E  KE  G    P      YTPL A L QVL  IK    LK PE
Subjt:  IGERQPQT----IHDP-----------GTKRGRSRQ---------EQSSTNGRGRPE-AKEPQG-YAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPE

Query:  KLRSNPDRRNRNKYCMSHGDHDHTTRECIQLRNKIETMIREGYLKEFVGSDRS
        K++ +P++RN+NKYC  H DH H T EC  L+ +IE +IR+G LK FVG DR+
Subjt:  KLRSNPDRRNRNKYCMSHGDHDHTTRECIQLRNKIETMIREGYLKEFVGSDRS

TrEMBL top hitse value%identityAlignment
A0A2N9F1B5 Ribonuclease H2.7e-3338.3Show/hide
Query:  CRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDERLLNS
        CR F  TL G AR WF K+   S+GS  +L+R F    +G     +P  +LL VKQ   E+L+ Y+ +FN + LLV+G DD   L   ISGLQ E  L S
Subjt:  CRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDERLLNS

Query:  IGERQPQT---IHDPGTKR----------GRSRQEQSSTNGRGRPEAKEPQGYAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPEKLRSNPDRRNRNK
        I +  P T   I  PG KR              + ++  N  GR E +  +G+ E    F+R+TPL A ++ +   I+    LK P KL ++PD+R R+K
Subjt:  IGERQPQT---IHDPGTKR----------GRSRQEQSSTNGRGRPEAKEPQGYAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPEKLRSNPDRRNRNK

Query:  YCMSHGDHDHTTRECIQLRNKIETMIREGYLKEFV
        YC  H DH H T  C  L+ +IE +I++G L+ F+
Subjt:  YCMSHGDHDHTTRECIQLRNKIETMIREGYLKEFV

A0A2N9HJ21 Ribonuclease H3.9e-3237.39Show/hide
Query:  CRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDERLLNS
        CR F  TL G AR WF KI   S+GS  +L+R F    +GA    +P  +LL +KQ   E+L+ Y+ +FN + LLV+G DD   L   ISGLQ    L S
Subjt:  CRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDERLLNS

Query:  IGERQPQTIHDPGTKRGRSRQEQSSTNGRGRPEAKEPQGYAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPEKLRSNPDRRNRNKYCMSHGDHDHTTR
        + +  P T+ +   +  R    + +   R +   K+ +G+ E    F+ +TPL A ++ +   I+    LK P KL ++PD+R R+KYC  H DH H T 
Subjt:  IGERQPQTIHDPGTKRGRSRQEQSSTNGRGRPEAKEPQGYAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPEKLRSNPDRRNRNKYCMSHGDHDHTTR

Query:  ECIQLRNKIETMIREGYLKEFV
        +C  L+ +IE +I++G L+ FV
Subjt:  ECIQLRNKIETMIREGYLKEFV

A0A2N9I6T5 Uncharacterized protein1.5e-3137.92Show/hide
Query:  CRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQ------D
        CR F  TL G AR WF KI   S+GS  +L+R F    +GA    +P  +LL +KQ   E+L+ Y+ +FN + LLV+G DD   LI  ISGLQ       
Subjt:  CRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQ------D

Query:  ERLL---NSIGER-------QPQTIHD--PGTKRGRSRQEQSSTNGRGRPEAKEPQGYAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPEKLRSNPDR
        E LL    ++G++       +P   HD  P  +R R+R+ +   NGRG  E             F+ +TPL A ++ +   I+    LK P KL ++PD+
Subjt:  ERLL---NSIGER-------QPQTIHD--PGTKRGRSRQEQSSTNGRGRPEAKEPQGYAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPEKLRSNPDR

Query:  RNRNKYCMSHGDHDHTTRECIQLRNKIETMIREGYLKEFV
        R R+KYC  H DH H T +C  L+ +IE +I++G L+ FV
Subjt:  RNRNKYCMSHGDHDHTTRECIQLRNKIETMIREGYLKEFV

A0A6J1DWY0 uncharacterized protein LOC1110252931.4e-4240.89Show/hide
Query:  EATRCRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDER
        EA RCR F  TL G AR WF ++ R SI S K LARAFVTQ +G   R +P   LLT+KQ   ESL+DY+ +FN + L VEG  D  +L+  +SG++DE 
Subjt:  EATRCRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDER

Query:  LLNSIGERQPQTI--------------------HDPGTKRGRSRQEQSSTNGRG-RPEAKEPQGYAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPEK
        L  S G+R P T                      +P  KR   ++E+S    +G R E ++     +P   F++YTP T  +EQVL  IK   LLK PE+
Subjt:  LLNSIGERQPQTI--------------------HDPGTKRGRSRQEQSSTNGRG-RPEAKEPQGYAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPEK

Query:  LRSNPDRRNRNKYCMSHGDHDHTTRECIQLRNKIETMIREGYLKEFV
        ++++  +R++ +YC+ H DH H T++C  L+ ++E +IR GYLKE+V
Subjt:  LRSNPDRRNRNKYCMSHGDHDHTTRECIQLRNKIETMIREGYLKEFV

A0A6J1DYL6 uncharacterized protein LOC1110257858.7e-3237.89Show/hide
Query:  SKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDERLLNSIGERQPQTI-------
        S I R SI S K LARAFVTQ +G   R +P   LLT+KQ   ESL DY+ +FN + L +E   D  +L+  +SG++DE L  S G++ P T        
Subjt:  SKIPRKSIGSAKELARAFVTQCLGAWSRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDERLLNSIGERQPQTI-------

Query:  -------------HDPGTKRGRSRQEQSSTNGRG-RPEAKEPQGYAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPEKLRSNPDRRNRNKYCMSHGDH
                      +P  KR   ++E+S    +G R E ++     +P   F++YTP T  LEQVL  IK   LLK PE+++    +R++ +YC+ H DH
Subjt:  -------------HDPGTKRGRSRQEQSSTNGRG-RPEAKEPQGYAEPKAIFDRYTPLTASLEQVLAAIKYTNLLKRPEKLRSNPDRRNRNKYCMSHGDH

Query:  DHTTRECIQLRNKIETMIREGYLKEFV
        +H T++   L+ ++E +IR GYL+E+V
Subjt:  DHTTRECIQLRNKIETMIREGYLKEFV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCACTCCTCGGCCAATGGCCGAGGCCGAGCAGAAGCCCAATCGCAAAAAGGCCCACAGAAGTTCGCCGCTAAAGACAACGTCAGGTACGTACACATGGAATAATGA
CAGGAAAAAGTTGGAAGCTCGGGCAAAGTCCGAGGCCGAGCAGGGCCAAAAATGGCGAGAGCTATCCAAATGGCTAAAAGACGAAGCGACAAGGTGCCGAGGCTTCGAGC
TAACACTCACGGGTTTGGCAAGACAATGGTTTAGTAAGATCCCACGGAAGTCAATCGGTTCGGCTAAAGAATTGGCCCGAGCATTTGTTACGCAATGCCTCGGGGCCTGG
AGCCGACAGAAGCCTCAGATCAATTTGCTAACAGTAAAGCAGGGGCCCCGAGAAAGCTTGAAGGATTATATTAACAAATTTAATAACAAAGTTTTGCTGGTAGAAGGATA
TGACGATGGATTTGCCTTGATTACTGCGATTTCAGGTCTGCAGGATGAAAGACTGCTCAACTCGATTGGTGAAAGGCAGCCACAGACAATTCATGACCCGGGCACAAAGA
GAGGCCGAAGCCGGCAAGAGCAGTCCTCGACCAATGGCCGAGGCCGACCAGAGGCGAAGGAGCCGCAAGGCTATGCGGAGCCAAAGGCCATATTCGACAGGTATACACCA
CTAACAGCTTCGCTTGAACAGGTTTTGGCTGCAATAAAGTACACGAATCTATTGAAACGCCCAGAAAAGTTAAGATCAAACCCCGACAGGAGGAACAGAAACAAATATTG
CATGTCCCACGGAGATCACGACCATACAACTCGAGAATGCATCCAGTTACGAAACAAGATAGAAACCATGATCCGAGAGGGTTACCTCAAGGAGTTTGTGGGGAGTGACA
GAAGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCACTCCTCGGCCAATGGCCGAGGCCGAGCAGAAGCCCAATCGCAAAAAGGCCCACAGAAGTTCGCCGCTAAAGACAACGTCAGGTACGTACACATGGAATAATGA
CAGGAAAAAGTTGGAAGCTCGGGCAAAGTCCGAGGCCGAGCAGGGCCAAAAATGGCGAGAGCTATCCAAATGGCTAAAAGACGAAGCGACAAGGTGCCGAGGCTTCGAGC
TAACACTCACGGGTTTGGCAAGACAATGGTTTAGTAAGATCCCACGGAAGTCAATCGGTTCGGCTAAAGAATTGGCCCGAGCATTTGTTACGCAATGCCTCGGGGCCTGG
AGCCGACAGAAGCCTCAGATCAATTTGCTAACAGTAAAGCAGGGGCCCCGAGAAAGCTTGAAGGATTATATTAACAAATTTAATAACAAAGTTTTGCTGGTAGAAGGATA
TGACGATGGATTTGCCTTGATTACTGCGATTTCAGGTCTGCAGGATGAAAGACTGCTCAACTCGATTGGTGAAAGGCAGCCACAGACAATTCATGACCCGGGCACAAAGA
GAGGCCGAAGCCGGCAAGAGCAGTCCTCGACCAATGGCCGAGGCCGACCAGAGGCGAAGGAGCCGCAAGGCTATGCGGAGCCAAAGGCCATATTCGACAGGTATACACCA
CTAACAGCTTCGCTTGAACAGGTTTTGGCTGCAATAAAGTACACGAATCTATTGAAACGCCCAGAAAAGTTAAGATCAAACCCCGACAGGAGGAACAGAAACAAATATTG
CATGTCCCACGGAGATCACGACCATACAACTCGAGAATGCATCCAGTTACGAAACAAGATAGAAACCATGATCCGAGAGGGTTACCTCAAGGAGTTTGTGGGGAGTGACA
GAAGCTAA
Protein sequenceShow/hide protein sequence
MSTPRPMAEAEQKPNRKKAHRSSPLKTTSGTYTWNNDRKKLEARAKSEAEQGQKWRELSKWLKDEATRCRGFELTLTGLARQWFSKIPRKSIGSAKELARAFVTQCLGAW
SRQKPQINLLTVKQGPRESLKDYINKFNNKVLLVEGYDDGFALITAISGLQDERLLNSIGERQPQTIHDPGTKRGRSRQEQSSTNGRGRPEAKEPQGYAEPKAIFDRYTP
LTASLEQVLAAIKYTNLLKRPEKLRSNPDRRNRNKYCMSHGDHDHTTRECIQLRNKIETMIREGYLKEFVGSDRS