; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028897 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028897
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr8:32490916..32493503
RNA-Seq ExpressionLag0028897
SyntenyLag0028897
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032941.1 hypothetical protein E6C27_scaffold269G00150 [Cucumis melo var. makuwa]3.6e-1565.82Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGS
        ST+TR SAF+RLS+STSKK R ST  FDRLK+TNDQ +R+M  L+ K F E N D K+HS + SRMKRK SV INTEGS
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGS

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]2.8e-1564.2Show/hide
Query:  MSTFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSL
        MST+ R SAF+RLS+STSKK R ST  FDRLK+TNDQ +R+M + + K F E N D K+HS + SRMKRK SV INTEGSL
Subjt:  MSTFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSL

KAA0056218.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-1853.66Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKDLIKTMTKIRAFKCKSSLS
        ST+TR SAF+RLS+STSKK R STFVFDRLK+TNDQ +R+M  L+ K F E N D K+H+ + SRMKRK SV IN E                       
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKDLIKTMTKIRAFKCKSSLS

Query:  QEPKLHDAPSPHELKSSFSPSSR
         EPKLH APSP ELKSS   S R
Subjt:  QEPKLHDAPSPHELKSSFSPSSR

KAA0063700.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-1563.75Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSL
        ST+TR SAF+RLS+STSKK+R STF FDR+K+TN Q +R+M +L+ KLF E N D  +HS + SRMKRK S+ INTEGSL
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSL

KAA0065966.1 hypothetical protein E6C27_scaffold62G00430 [Cucumis melo var. makuwa]2.5e-1650.4Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKDLIKTMTKIRAFKCKSSLS
        ST+TR SAF+RLS+STSKK R ST  FDR K+TN+Q +R++ +L+ KLF E N D K+HS + SRMKRK SV INTE                       
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKDLIKTMTKIRAFKCKSSLS

Query:  QEPKLHDAPSPHELKSSFSPSSRSL
         +PKLH APSP ELK SF P + S+
Subjt:  QEPKLHDAPSPHELKSSFSPSSRSL

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein1.3e-1564.2Show/hide
Query:  MSTFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSL
        MST+ R SAF+RLS+STSKK R ST  FDRLK+TNDQ +R+M + + K F E N D K+HS + SRMKRK SV INTEGSL
Subjt:  MSTFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSL

A0A5A7UM99 Ty3-gypsy retrotransposon protein7.6e-1953.66Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKDLIKTMTKIRAFKCKSSLS
        ST+TR SAF+RLS+STSKK R STFVFDRLK+TNDQ +R+M  L+ K F E N D K+H+ + SRMKRK SV IN E                       
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKDLIKTMTKIRAFKCKSSLS

Query:  QEPKLHDAPSPHELKSSFSPSSR
         EPKLH APSP ELKSS   S R
Subjt:  QEPKLHDAPSPHELKSSFSPSSR

A0A5A7V935 Ty3-gypsy retrotransposon protein6.0e-1663.75Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSL
        ST+TR SAF+RLS+STSKK+R STF FDR+K+TN Q +R+M +L+ KLF E N D  +HS + SRMKRK S+ INTEGSL
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSL

A0A5A7VHY3 Uncharacterized protein1.2e-1650.4Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKDLIKTMTKIRAFKCKSSLS
        ST+TR SAF+RLS+STSKK R ST  FDR K+TN+Q +R++ +L+ KLF E N D K+HS + SRMKRK SV INTE                       
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKDLIKTMTKIRAFKCKSSLS

Query:  QEPKLHDAPSPHELKSSFSPSSRSL
         +PKLH APSP ELK SF P + S+
Subjt:  QEPKLHDAPSPHELKSSFSPSSRSL

A0A5D3BBF9 Gag protease polyprotein1.7e-1565Show/hide
Query:  STFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSL
        ST+ R SAF+RLS+STSKK R ST  FDRLK+TNDQ +R+M +L+ K F E N D K+HS + SRMKRK SV INTEGSL
Subjt:  STFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATTTGTCTTTGATCGCCTCAAAGTAACAAACGATCA
ACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCTATCACGTATGAAGAGGAAGTTTTCTGTTC
TCATAAATACGGAAGGTTCCTTGAAGGATCTGATCAAGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCT
AGCCCACACGAGCTTAAAAGTTCCTTCTCTCCAAGTTCTCGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGC
GTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTC
TCAAGTTCGATGGTTCTCACGCAGCTTTGCTGAAGTTACTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAGGTTCTCACTC
GCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCC
AAGTTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTTACGCGCTT
TGCTACAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGT
TTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCATTCCTCCAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTC
CTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCACTTC
TCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCGAAGGCGTTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTC
TCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTC
CTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTGGTGAGATCACTGCAAG
TGAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCTATCAAAGTGACTGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACC
ACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACA
GTCATCAAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATTTGTCTTTGATCGCCTCAAAGTAACAAACGATCA
ACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCTATCACGTATGAAGAGGAAGTTTTCTGTTC
TCATAAATACGGAAGGTTCCTTGAAGGATCTGATCAAGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCT
AGCCCACACGAGCTTAAAAGTTCCTTCTCTCCAAGTTCTCGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTATCCTGCTGC
GTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGTGAAGGATCTTATGTGGTGCGTTGTTGCATTGTTCCCTCTTCTC
TCAAGTTCGATGGTTCTCACGCAGCTTTGCTGAAGTTACTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTCCGTTGCAGTTCCTTCTTTCAAGGTCGAAGGTTCTCACTC
GCTGCGTTGCAGTTCTTTCTCCCCAAGTTCGAAGGTTCACGCACTTCGCTGCAGTTCCTTCTCCCAAATTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCC
AAGTTCGAAGGTTCTCACGCGCTTCGCTGTAGTTCCTTCCCCCAAGTTTGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTTACGCGCTT
TGCTACAGTTCCTTCCTCACAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCAGTTCCTTCCTCCAAGT
TTGAAGGTTCTCACATCGCTTCGCTTCGCGCTGCGCTTCGTTGCAGTTCATTCCTCCAAGTTCGAAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTC
CTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGGTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCACTTC
TCTCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTCGAAGGCGTTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTC
TCCACTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTC
CTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTTGACGTCCTCGTTCCGCTTCATCTTCAAATGTTGGCAGTGGTGAGATCACTGCAAG
TGAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACAGTCTATCAAAGTGACTGGTGGTGAAATCACTGCAAGTGAAAAGCTGATGACGACCGTGGTGACC
ACCCCTGCAGGAAACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGGTGAAATCACTGCAAGTGAAAGCTGATGACGACCGTGGTGACCACCCCTGCAGGAAACTACA
GTCATCAAAGTGA
Protein sequenceShow/hide protein sequence
MSTFTRPSAFQRLSVSTSKKSRSSTFVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKDLIKTMTKIRAFKCKSSLSQEPKLHDAP
SPHELKSSFSPSSRSLHCTLLRCSFSKFEGSSLYPAALFLLQVRGFSVVRLLRCSSSKCEGSYVVRCCIVPSSLKFDGSHAALLKLLLPKFEGSHALRCSSFFQGRRFSL
AALQFFLPKFEGSRTSLQFLLPNSKVLTRFALQFLPPSSKVLTRFAVVPSPKFEGSHALRCSSFPQVRRFLRALLQFLPHSSKVLTRFAAVPSPKFEGSHVASLQFLPPS
LKVLTSLRFALRFVAVHSSKFEVPSSKFEGSHALRCSFLQVRRFSHALLQLLPPSSKVPSRASLAPSPSSKALLSTAPSPSSKALLSTTPSPSSKAFLSAAPSPSSKALL
STAPSPSSKALLSTAPSPSSKVLLSTPLFEGSPLRFSFSKFEGSPLLLFKCLAAVDVLVPLHLQMLAVVRSLQVKADDDRGDHPCRKLQSIKVTGGEITASEKLMTTVVT
TPAGNYSHQSDWSRQVVKSLQVKADDDRGDHPCRKLQSSK