; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028900 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028900
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr8:32554727..32555308
RNA-Seq ExpressionLag0028900
SyntenyLag0028900
Gene Ontology termsNA
InterPro domainsIPR025558 - Domain of unknown function DUF4283
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022132681.1 uncharacterized protein LOC111005481 [Momordica charantia]2.2e-3642.71Show/hide
Query:  DEEEVAVDIDSLAVLEATSSMEKCLAGKLLVLRPIAC-----------------------------------EDRLCVLRSGSWYFDKFFMVIEMMDAVV
        +E+++AVDIDS A+      +E  L  KLL  R I+C                                    DR  +LR G W FD+  ++I+   ++ 
Subjt:  DEEEVAVDIDSLAVLEATSSMEKCLAGKLLVLRPIAC-----------------------------------EDRLCVLRSGSWYFDKFFMVIEMMDAVV

Query:  QPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDGPIGGCWIPMQYEKLP
        +P DM F   S WVHFFDL L CMN  MA +LGNA+G FE+V+ ++   CWGS LRVR+  D+ KPL R IKLN+DGP+GGCWIP+QYE+LP
Subjt:  QPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDGPIGGCWIPMQYEKLP

XP_022156185.1 uncharacterized protein LOC111023135 [Momordica charantia]1.1e-3540.31Show/hide
Query:  DEEEVAVDIDSLAVLEATSSMEKCLAGKLLVLRPIACE----------------------------------DRLCVLRSGSWYFDKFFMVIEMMDAVVQ
        +E+E+A+D+D  AV  A   +   L GKLL  R I+ +                                  D   V+++G W+FDK  +V++   +   
Subjt:  DEEEVAVDIDSLAVLEATSSMEKCLAGKLLVLRPIACE----------------------------------DRLCVLRSGSWYFDKFFMVIEMMDAVVQ

Query:  PSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDGPIGGCWIPMQYEKLP
         S+++F+R +FW+H FDLP+  +N  MA +LGNA+G F +VDC+  G  WG+SLR+R+ +DI+KPLRR IK+NIDGP+GGCWIP+QYE+LP
Subjt:  PSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDGPIGGCWIPMQYEKLP

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]6.9e-3843.75Show/hide
Query:  DEEEVAVDIDSLAVLEATSSMEKCLAGKLLVLRPIACE-----------------------------------DRLCVLRSGSWYFDKFFMVIEMMDAVV
        +EEE A+D+D+ A     S +E+ L GKL + RPI C                                    DR  + +SG W FD+  ++I    A++
Subjt:  DEEEVAVDIDSLAVLEATSSMEKCLAGKLLVLRPIACE-----------------------------------DRLCVLRSGSWYFDKFFMVIEMMDAVV

Query:  QPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDGPIGGCWIPMQYEKLP
         PS++ F +   WV FFDLPL C+   MA +LGNA+G FE  DCD +   WGS+LRVR+ LDISKPLRR IKLN+DGPIGG WIP+QYE+LP
Subjt:  QPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDGPIGGCWIPMQYEKLP

XP_028122006.1 uncharacterized protein LOC114319195 [Camellia sinensis]1.2e-2134.36Show/hide
Query:  MVDEEEVAVDIDSLAVLEATSSMEKCLAGKLLVLRPIACE----------------------------------DRLCVLRSGSWYFDKFFMVIEMMDAV
        +  EE+  V I   +        + CL GKLL  RP   E                                  D+  VL  G W FDK  +++  MD  
Subjt:  MVDEEEVAVDIDSLAVLEATSSMEKCLAGKLLVLRPIACE----------------------------------DRLCVLRSGSWYFDKFFMVIEMMDAV

Query:  VQPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDG--PIGGCWIPMQYEKLP
        VQPSD+Q  R  FWVH  +LPL  MN  +   +GNAVG F ++D +  G  WG ++R+R+ LD+ KPLRR +KL +    PI   W+  +YE+LP
Subjt:  VQPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDG--PIGGCWIPMQYEKLP

XP_028124075.1 uncharacterized protein LOC114321128 [Camellia sinensis]2.6e-2135.03Show/hide
Query:  MVDEEEVAVDI--DSLAVLEATSSMEKCLAGKLLVLRPIACE----------------------------------DRLCVLRSGSWYFDKFFMVIEMMD
        +  EE+  V I  DS +++   S M  CL GKLL  RP   E                                  D+  VL +G W FDK  +++  MD
Subjt:  MVDEEEVAVDI--DSLAVLEATSSMEKCLAGKLLVLRPIACE----------------------------------DRLCVLRSGSWYFDKFFMVIEMMD

Query:  AVVQPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDG--PIGGCWIPMQYEKLP
          VQPSD+Q     FWVH  +LPL  MN  + + +GNAVG F ++D +  G  WG ++R+R+ +D+ KPLRR +KL +    PI   W+  +YE+LP
Subjt:  AVVQPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDG--PIGGCWIPMQYEKLP

TrEMBL top hitse value%identityAlignment
A0A314YVX1 CCHC-type domain-containing protein3.2e-2044.36Show/hide
Query:  GKLLVLRPIACE-DRLCVLRSGSWYFDKFFMVIEMMDAVVQPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIF
        G+ L L   A E DRL VLRSG W FDK  +++E+ D  V PS M    A FW+   ++PLCCM   M RQ+GN++G   +V     G C G  LR+R+ 
Subjt:  GKLLVLRPIACE-DRLCVLRSGSWYFDKFFMVIEMMDAVVQPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIF

Query:  LDISKPLRREIKLNIDGPIGGC-WIPMQYEKLP
        LD+SKPL R  KL +  P G   ++  +YE+LP
Subjt:  LDISKPLRREIKLNIDGPIGGC-WIPMQYEKLP

A0A5C7HVE7 Uncharacterized protein4.6e-1936.67Show/hide
Query:  EDRLCVLRSGSWYFDKFFMVIEMMDAVVQPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIK
        +DR  VL  G W FD   +V+E ++ + +   +QF R  FWV   + PL CM   +   LG  +G   ++D  S G C+G  LRVR+ +DIS+PL+R I+
Subjt:  EDRLCVLRSGSWYFDKFFMVIEMMDAVVQPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIK

Query:  LNIDGPIGGCWIPMQYEKLP
        ++++G      + ++YE+LP
Subjt:  LNIDGPIGGCWIPMQYEKLP

A0A6J1BSZ1 uncharacterized protein LOC1110054811.1e-3642.71Show/hide
Query:  DEEEVAVDIDSLAVLEATSSMEKCLAGKLLVLRPIAC-----------------------------------EDRLCVLRSGSWYFDKFFMVIEMMDAVV
        +E+++AVDIDS A+      +E  L  KLL  R I+C                                    DR  +LR G W FD+  ++I+   ++ 
Subjt:  DEEEVAVDIDSLAVLEATSSMEKCLAGKLLVLRPIAC-----------------------------------EDRLCVLRSGSWYFDKFFMVIEMMDAVV

Query:  QPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDGPIGGCWIPMQYEKLP
        +P DM F   S WVHFFDL L CMN  MA +LGNA+G FE+V+ ++   CWGS LRVR+  D+ KPL R IKLN+DGP+GGCWIP+QYE+LP
Subjt:  QPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDGPIGGCWIPMQYEKLP

A0A6J1DU55 uncharacterized protein LOC1110231355.4e-3640.31Show/hide
Query:  DEEEVAVDIDSLAVLEATSSMEKCLAGKLLVLRPIACE----------------------------------DRLCVLRSGSWYFDKFFMVIEMMDAVVQ
        +E+E+A+D+D  AV  A   +   L GKLL  R I+ +                                  D   V+++G W+FDK  +V++   +   
Subjt:  DEEEVAVDIDSLAVLEATSSMEKCLAGKLLVLRPIACE----------------------------------DRLCVLRSGSWYFDKFFMVIEMMDAVVQ

Query:  PSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDGPIGGCWIPMQYEKLP
         S+++F+R +FW+H FDLP+  +N  MA +LGNA+G F +VDC+  G  WG+SLR+R+ +DI+KPLRR IK+NIDGP+GGCWIP+QYE+LP
Subjt:  PSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDGPIGGCWIPMQYEKLP

A0A6J1DX30 uncharacterized protein LOC1110248743.4e-3843.75Show/hide
Query:  DEEEVAVDIDSLAVLEATSSMEKCLAGKLLVLRPIACE-----------------------------------DRLCVLRSGSWYFDKFFMVIEMMDAVV
        +EEE A+D+D+ A     S +E+ L GKL + RPI C                                    DR  + +SG W FD+  ++I    A++
Subjt:  DEEEVAVDIDSLAVLEATSSMEKCLAGKLLVLRPIACE-----------------------------------DRLCVLRSGSWYFDKFFMVIEMMDAVV

Query:  QPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDGPIGGCWIPMQYEKLP
         PS++ F +   WV FFDLPL C+   MA +LGNA+G FE  DCD +   WGS+LRVR+ LDISKPLRR IKLN+DGPIGG WIP+QYE+LP
Subjt:  QPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVDCDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDGPIGGCWIPMQYEKLP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGATGAAGAGGAAGTAGCGGTGGATATTGACTCCTTAGCGGTTTTGGAGGCGACATCCAGTATGGAGAAGTGTTTGGCTGGGAAGCTTCTTGTGCTGCGGCCGAT
AGCGTGTGAGGATAGGTTGTGTGTCCTTCGCTCGGGGTCGTGGTACTTTGATAAGTTTTTTATGGTTATTGAGATGATGGATGCAGTGGTACAACCCTCGGATATGCAGT
TTCACAGGGCGTCCTTTTGGGTCCATTTCTTTGATCTCCCACTTTGTTGCATGAATGTTGCTATGGCACGACAGTTAGGCAACGCGGTTGGTACTTTTGAGAATGTGGAT
TGTGATTCGATGGGGCGCTGTTGGGGATCAAGTTTGCGTGTGCGTATCTTTCTGGATATCTCCAAACCTTTGCGGCGGGAAATCAAGTTGAACATTGATGGGCCTATTGG
GGGTTGCTGGATTCCCATGCAATATGAGAAGCTCCCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGATGAAGAGGAAGTAGCGGTGGATATTGACTCCTTAGCGGTTTTGGAGGCGACATCCAGTATGGAGAAGTGTTTGGCTGGGAAGCTTCTTGTGCTGCGGCCGAT
AGCGTGTGAGGATAGGTTGTGTGTCCTTCGCTCGGGGTCGTGGTACTTTGATAAGTTTTTTATGGTTATTGAGATGATGGATGCAGTGGTACAACCCTCGGATATGCAGT
TTCACAGGGCGTCCTTTTGGGTCCATTTCTTTGATCTCCCACTTTGTTGCATGAATGTTGCTATGGCACGACAGTTAGGCAACGCGGTTGGTACTTTTGAGAATGTGGAT
TGTGATTCGATGGGGCGCTGTTGGGGATCAAGTTTGCGTGTGCGTATCTTTCTGGATATCTCCAAACCTTTGCGGCGGGAAATCAAGTTGAACATTGATGGGCCTATTGG
GGGTTGCTGGATTCCCATGCAATATGAGAAGCTCCCCTAG
Protein sequenceShow/hide protein sequence
MVDEEEVAVDIDSLAVLEATSSMEKCLAGKLLVLRPIACEDRLCVLRSGSWYFDKFFMVIEMMDAVVQPSDMQFHRASFWVHFFDLPLCCMNVAMARQLGNAVGTFENVD
CDSMGRCWGSSLRVRIFLDISKPLRREIKLNIDGPIGGCWIPMQYEKLP