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Lag0028927 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028927
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr8:33009337..33010912
RNA-Seq ExpressionLag0028927
SyntenyLag0028927
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7802400.1 uncharacterized protein G2W53_041511 [Senna tora]5.2e-0537.18Show/hide
Query:  VDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAH
        V+  EA+A+ + ++VAK    L + VE DSA V  ++     DC+ V  ++++I Q+   F   S  W RREAN +AH
Subjt:  VDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAH

KAF7819670.1 uncharacterized protein G2W53_025125 [Senna tora]4.3e-0736.26Show/hide
Query:  MLTSMKFVQYVQDVDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAH
        ++   K  +    VD LEA+A+ + L++AK    L +EVE DSA+V  ++     D S +G+++++I ++   F F S +W RRE N LAH
Subjt:  MLTSMKFVQYVQDVDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAH

KAF7835887.1 uncharacterized protein G2W53_010746 [Senna tora]8.1e-0637.04Show/hide
Query:  VQDVDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAH
        +  VD +EA+A+ D L++AK    L +EVE DSA V  ++     D S +G+++++I  +   F   S +W RRE N +AH
Subjt:  VQDVDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAH

XP_024317835.1 uncharacterized protein LOC112271862 [Brachypodium distachyon]2.4e-0535.16Show/hide
Query:  MLTSMKFVQYVQDVDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAH
        M+   +  Q + D   +EA+A+RD+  +AKE  F R+ +ETD A +  + R+     S VG ++ EI +  + F+ C + + RREAN +AH
Subjt:  MLTSMKFVQYVQDVDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAH

XP_030939479.1 uncharacterized protein LOC115964277 [Quercus lobata]3.1e-0537.97Show/hide
Query:  VDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAHR
        V+ +E +A R +L+ A+E GF R+ +E DS  V   I   + DCS +G ++Q+I  +   F F SV+   RE N +AH+
Subjt:  VDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAHR

TrEMBL top hitse value%identityAlignment
A0A2K2D3A0 RNase H domain-containing protein1.1e-0535.16Show/hide
Query:  MLTSMKFVQYVQDVDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAH
        M+   +  Q + D   +EA+A+RD+  +AKE  F R+ +ETD A +  + R+     S VG ++ EI +  + F+ C + + RREAN +AH
Subjt:  MLTSMKFVQYVQDVDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAH

A0A2P6RRN6 Putative ribonuclease H-like domain-containing protein2.1e-0438.16Show/hide
Query:  LEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAHR
        +EA ++R  L+++   G+  +E+ETDSA +A  + +S++D SE+G +V +  + +  F F SV    REAN +AHR
Subjt:  LEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAHR

A0A498IRB7 RNase H domain-containing protein2.5e-0537.18Show/hide
Query:  VDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAH
        V+ +E +AIR+ L++A   GFLR++VE DS       +    + S +G +V +I ++L EFL C++ +  RE N  AH
Subjt:  VDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAH

A0A540MQ07 RNase H domain-containing protein2.5e-0537.18Show/hide
Query:  VDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAH
        V+ +E +AIR+ L++A   GFLR++VE DS       +    + S +G +V +I ++L EFL C++ +  RE N  AH
Subjt:  VDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAH

A0A803LHG6 Uncharacterized protein7.4e-0536.71Show/hide
Query:  DVDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAH
        DVD +EAMA+R +L +A E+GF+RL +ETD+ ++ + ++ S  D +  G++V++I  +      C   + +RE N +AH
Subjt:  DVDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTACCTCGATGAAATTTGTCCAATATGTGCAGGATGTGGACGCACTAGAGGCAATGGCGATCCGCGACAGTCTGATTGTTGCTAAAGAAGCCGGCTTCTTG
AGACTAGAGGTGGAGACTGATTCAGCTCGTGTGGCAGCCATTATTCGATCAAGCCATAAGGATTGCTCTGAGGTGGGAGTTCTGGTACAGGAGATCAATCAGATC
TTGAAGGAGTTTCTGTTCTGCTCTGTGCGTTGGTGCCGGAGGGAGGCTAATCTGTTGGCTCATAGGTGGCGCGTCAGGTACACCAAAGAAGAAGGGCTTCGGACC
CAGCTGAGATCGGCCCGAGGAGATGAAGGCCCGCAAGAGGTGGAATGTCACCTTGGCCTCGGCCCAATGCCGAGGCCGAGGGTTTTCTGGACTGGGAGACCGGCC
GGAGATTTTCCGATCACTGACTTAGGCATCGGAGCACGTGTGGCGAGCACCACACCGGTGTGCAGTGCTCACTTTCTTTCTTTGCAGGTCACGTCTTCTCCATAC
CTCAACAAGTTCATTGTTGGTGTCACGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTACCTCGATGAAATTTGTCCAATATGTGCAGGATGTGGACGCACTAGAGGCAATGGCGATCCGCGACAGTCTGATTGTTGCTAAAGAAGCCGGCTTCTTG
AGACTAGAGGTGGAGACTGATTCAGCTCGTGTGGCAGCCATTATTCGATCAAGCCATAAGGATTGCTCTGAGGTGGGAGTTCTGGTACAGGAGATCAATCAGATC
TTGAAGGAGTTTCTGTTCTGCTCTGTGCGTTGGTGCCGGAGGGAGGCTAATCTGTTGGCTCATAGGTGGCGCGTCAGGTACACCAAAGAAGAAGGGCTTCGGACC
CAGCTGAGATCGGCCCGAGGAGATGAAGGCCCGCAAGAGGTGGAATGTCACCTTGGCCTCGGCCCAATGCCGAGGCCGAGGGTTTTCTGGACTGGGAGACCGGCC
GGAGATTTTCCGATCACTGACTTAGGCATCGGAGCACGTGTGGCGAGCACCACACCGGTGTGCAGTGCTCACTTTCTTTCTTTGCAGGTCACGTCTTCTCCATAC
CTCAACAAGTTCATTGTTGGTGTCACGTGA
Protein sequenceShow/hide protein sequence
MLTSMKFVQYVQDVDALEAMAIRDSLIVAKEAGFLRLEVETDSARVAAIIRSSHKDCSEVGVLVQEINQILKEFLFCSVRWCRREANLLAHRWRVRYTKEEGLRT
QLRSARGDEGPQEVECHLGLGPMPRPRVFWTGRPAGDFPITDLGIGARVASTTPVCSAHFLSLQVTSSPYLNKFIVGVT