CuGenDBv2

Gene ID	Lag0028937
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	CCHC-type domain-containing protein
Genome location	chr8:33196145..33198063
RNA-Seq Expression	Lag0028937
Synteny	Lag0028937
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR001878 - Zinc finger, CCHC-type IPR025836 - Zinc knuckle CX2CX4HX4C IPR040256 - Uncharacterized protein At4g02000-like

Homology

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GenBank top hits

e value

%identity

Alignment

TXG48431.1 hypothetical protein EZV62_027725 [Acer yangbiense]

1.4e-20

46.72

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Query:  VLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRL-VKGDGFVLWCPLQYERL
        VL    G    + L F+  +FWVHIT VP+ Y T  +   LGS++G V EV     SD LG  MRVR+ + + +PLRR +R+ V GDG     P+QYERL
Subjt:  VLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRL-VKGDGFVLWCPLQYERL

Query:  PDFCFRCGRIGHSHKECSEEGE
        P FCF CG +GH   EC+  GE
Subjt:  PDFCFRCGRIGHSHKECSEEGE

TXG50019.1 hypothetical protein EZV62_025894 [Acer yangbiense]

3.4e-19

44.07

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Query:  VLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRL-VKGDGFVLWCPLQYERL
        VL    G  D   + F +  FW+ I KVPL   T+ +   LGS++G V E+   G  D +G  +RVR+V+++ +PLRR++R+ V GDG      L+YERL
Subjt:  VLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRL-VKGDGFVLWCPLQYERL

Query:  PDFCFRCGRIGHSHKECS
        PD C+RCGRIGH  ++CS
Subjt:  PDFCFRCGRIGHSHKECS

TXG66222.1 hypothetical protein EZV62_007497 [Acer yangbiense]

2.4e-20

42.22

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Query:  VLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRL-VKGDGFVLWCPLQYERL
        V+    G  D   + F++ EFW+ I  VP+   T  +   LG++VG VVEV       +    +RVR++L + +PLRR +R+ V GDG      L+YERL
Subjt:  VLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRL-VKGDGFVLWCPLQYERL

Query:  PDFCFRCGRIGHSHKECSEEG--EGVGADNQFLFG
        PDFCFRCG IGHS K+C E+    G G    F+FG
Subjt:  PDFCFRCGRIGHSHKECSEEG--EGVGADNQFLFG

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]

2.2e-26

39.85

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Query:  VLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRLVKGDGFVLWCPLQYERLP
        VL+S   ++ P  ++F+ C FW+ I  +P    +  MA+ LG+ +G V E+ G+G   W G  +RVR+ +++++PLRR ++L   DG  +WCPL+YE+LP
Subjt:  VLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRLVKGDGFVLWCPLQYERLP

Query:  DFCFRCGRIGHSHKECSEEGEGVGADNQFLFGD
        DFC+ CG+IGHS +EC +  + V  ++   +GD
Subjt:  DFCFRCGRIGHSHKECSEEGEGVGADNQFLFGD

XP_022156711.1 uncharacterized protein LOC111023555 [Momordica charantia]

1.3e-21

31.96

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Query:  MDDLVVQWENMGLSEAESTAFSVPADIPLLDESTVQLCAVGKVLSSK------------------------------------------------PGSDD
        MDD+   WEN  L + E     +    P+L    +QLCAVGK+  SK                                                P + D
Subjt:  MDDLVVQWENMGLSEAESTAFSVPADIPLLDESTVQLCAVGKVLSSK------------------------------------------------PGSDD

Query:  PSLL--------------DFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRLVKGDGFVLWCPLQY
         SLL              D S C FWV I  +     T  MA  LG+ +G V EV G    DW+   + VR+ +N+ +PLRR +++   DG  +WCPL+Y
Subjt:  PSLL--------------DFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRLVKGDGFVLWCPLQY

Query:  ERLPDFCFRCGRIGHSHKE
        ERLPDFC+ CG +GHS +E
Subjt:  ERLPDFCFRCGRIGHSHKE

TrEMBL top hits

e value

%identity

Alignment

A0A5C7GUN1 Uncharacterized protein

6.7e-21

46.72

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Query:  VLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRL-VKGDGFVLWCPLQYERL
        VL    G    + L F+  +FWVHIT VP+ Y T  +   LGS++G V EV     SD LG  MRVR+ + + +PLRR +R+ V GDG     P+QYERL
Subjt:  VLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRL-VKGDGFVLWCPLQYERL

Query:  PDFCFRCGRIGHSHKECSEEGE
        P FCF CG +GH   EC+  GE
Subjt:  PDFCFRCGRIGHSHKECSEEGE

A0A5C7GZQ4 CCHC-type domain-containing protein

1.6e-19

44.07

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Query:  VLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRL-VKGDGFVLWCPLQYERL
        VL    G  D   + F +  FW+ I KVPL   T+ +   LGS++G V E+   G  D +G  +RVR+V+++ +PLRR++R+ V GDG      L+YERL
Subjt:  VLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRL-VKGDGFVLWCPLQYERL

Query:  PDFCFRCGRIGHSHKECS
        PD C+RCGRIGH  ++CS
Subjt:  PDFCFRCGRIGHSHKECS

A0A5C7IBW4 CCHC-type domain-containing protein

1.1e-20

42.22

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Query:  VLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRL-VKGDGFVLWCPLQYERL
        V+    G  D   + F++ EFW+ I  VP+   T  +   LG++VG VVEV       +    +RVR++L + +PLRR +R+ V GDG      L+YERL
Subjt:  VLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRL-VKGDGFVLWCPLQYERL

Query:  PDFCFRCGRIGHSHKECSEEG--EGVGADNQFLFG
        PDFCFRCG IGHS K+C E+    G G    F+FG
Subjt:  PDFCFRCGRIGHSHKECSEEG--EGVGADNQFLFG

A0A6J1D765 uncharacterized protein LOC111017902

1.1e-26

39.85

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Query:  VLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRLVKGDGFVLWCPLQYERLP
        VL+S   ++ P  ++F+ C FW+ I  +P    +  MA+ LG+ +G V E+ G+G   W G  +RVR+ +++++PLRR ++L   DG  +WCPL+YE+LP
Subjt:  VLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRLVKGDGFVLWCPLQYERLP

Query:  DFCFRCGRIGHSHKECSEEGEGVGADNQFLFGD
        DFC+ CG+IGHS +EC +  + V  ++   +GD
Subjt:  DFCFRCGRIGHSHKECSEEGEGVGADNQFLFGD

A0A6J1DVS4 uncharacterized protein LOC111023555

6.1e-22

31.96

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Query:  MDDLVVQWENMGLSEAESTAFSVPADIPLLDESTVQLCAVGKVLSSK------------------------------------------------PGSDD
        MDD+   WEN  L + E     +    P+L    +QLCAVGK+  SK                                                P + D
Subjt:  MDDLVVQWENMGLSEAESTAFSVPADIPLLDESTVQLCAVGKVLSSK------------------------------------------------PGSDD

Query:  PSLL--------------DFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRLVKGDGFVLWCPLQY
         SLL              D S C FWV I  +     T  MA  LG+ +G V EV G    DW+   + VR+ +N+ +PLRR +++   DG  +WCPL+Y
Subjt:  PSLL--------------DFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRLVKGDGFVLWCPLQY

Query:  ERLPDFCFRCGRIGHSHKE
        ERLPDFC+ CG +GHS +E
Subjt:  ERLPDFCFRCGRIGHSHKE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G42140.1 zinc ion binding;nucleic acid binding

8.7e-05

27.19

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Query:  DFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRLVKGDGFVLWCPLQYERLPDFCFRCGRIGHSHK
        +F R  FW+ I  +PL + TA +  ++G  +G  +E                         L R V ++K          QYE+L +FC  CG + H   
Subjt:  DFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVRIVLNMAQPLRRVVRLVKGDGFVLWCPLQYERLPDFCFRCGRIGHSHK

Query:  ECSEEG-EGVGADN
        EC   G +G  AD+
Subjt:  ECSEEG-EGVGADN

Sequences

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CDS sequence

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ATGAAGCGGCGTCTTCACGGGGTTGAGGTGGTCTCCAGCGGGTTTAGGGTCTCGAAGTGGTCGGCGGTCTTCGATCTCCTACACGGGTTTTGGGTTGTCTTCAGCGGCAA
CAGAGCTTCTGAGTTTCGGCGGTTGATCTCCGGTAGGGTCGGTGTCGTCTCCGGTGCTTTCAGGGTCGAGGTTGGCTTCGGTCGCCTTTGTGTGCTTCGCGATTTTGGTC
TTGTGGTCTGGTTTCAGTCTGTAGCTGTCGGTTTGCTTGTTTTTATTCTGTTGAGTTTGTCTAAGGATTGCGGGGTTTTGGTGTCTCTTGAAGCGAGTTCCCTCGGTGCA
CGTATGGATGATCTTGTGGTTCAATGGGAAAATATGGGGTTATCAGAGGCAGAGTCGACGGCGTTCTCTGTGCCAGCAGACATTCCTCTTTTGGATGAATCAACAGTTCA
ACTGTGTGCAGTTGGCAAGGTTCTTTCTTCCAAGCCGGGGTCGGATGACCCATCTCTCCTGGACTTTTCTCGTTGTGAGTTTTGGGTTCATATCACGAAAGTTCCGTTGA
ACTATCATACAGCAGCTATGGCTCATGCTCTTGGTAGTGTGGTGGGCCACGTGGTTGAGGTGCCAGGGGAAGGCCACAGTGACTGGCTTGGTTCAATAATGAGAGTTCGT
ATTGTCCTTAACATGGCTCAACCCCTTCGTCGTGTTGTCCGGCTTGTAAAAGGGGATGGGTTCGTTCTTTGGTGTCCTTTGCAGTATGAACGATTGCCGGATTTCTGTTT
TAGGTGTGGGCGTATTGGCCATTCACATAAGGAGTGCTCGGAGGAGGGGGAAGGCGTGGGTGCTGACAATCAGTTTCTGTTTGGTGACTAG

mRNA sequence

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Protein sequence

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MKRRLHGVEVVSSGFRVSKWSAVFDLLHGFWVVFSGNRASEFRRLISGRVGVVSGAFRVEVGFGRLCVLRDFGLVVWFQSVAVGLLVFILLSLSKDCGVLVSLEASSLGA
RMDDLVVQWENMGLSEAESTAFSVPADIPLLDESTVQLCAVGKVLSSKPGSDDPSLLDFSRCEFWVHITKVPLNYHTAAMAHALGSVVGHVVEVPGEGHSDWLGSIMRVR
IVLNMAQPLRRVVRLVKGDGFVLWCPLQYERLPDFCFRCGRIGHSHKECSEEGEGVGADNQFLFGD

Lag0028937 (gene) of Sponge gourd (AG-4) v1 genome