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Lag0028953 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028953
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionPhosphoglucomutase-1
Genome locationchr8:33350440..33354289
RNA-Seq ExpressionLag0028953
SyntenyLag0028953
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0016868 - intramolecular transferase activity, phosphotransferases (molecular function)
GO:0019843 - rRNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR002583 - Ribosomal protein S20
IPR036510 - Ribosomal protein S20 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5178092.1 30S ribosomal protein S20, chloroplastic-like [Thalictrum thalictroides]2.2e-0951.04Show/hide
Query:  PLQYSVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGVVGAY-EKRIFVEELGAQENSLLNCIPKDCANGLHKQT
        P + SV C+A  TKK D AAKRA QAEKRRIYNK++KSE+KTR+KKV   D  DVL     A  E+ I +E+L A+  S ++   K  A  LH+ T
Subjt:  PLQYSVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGVVGAY-EKRIFVEELGAQENSLLNCIPKDCANGLHKQT

OVA00350.1 Ribosomal protein S20 [Macleaya cordata]2.8e-0953.26Show/hide
Query:  SVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGVVGAYEKRIF-VEELGAQENSLLNCIPKDCANGLHKQT
        SV C+A  TKK D AAKRA QAEKRRIYNKA+KSE+KTR+KKV   D  DVL     A  + I  VE+L A+  S ++   K  A  LH+ T
Subjt:  SVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGVVGAYEKRIF-VEELGAQENSLLNCIPKDCANGLHKQT

XP_006451780.1 30S ribosomal protein S20, chloroplastic [Citrus clementina]1.7e-0939.42Show/hide
Query:  NIAGNRSGHESAVVAPRLCRPARVRVLVDDKAS-------SPLQYSVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGV
        ++  N S H S      LC   ++   V    S        P+++SV CKA   KK D AAKRA QAEKRRIYNK+RKSE+KTR+KKV   +  D L   
Subjt:  NIAGNRSGHESAVVAPRLCRPARVRVLVDDKAS-------SPLQYSVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGV

Query:  VGAYEKRIF-VEELGAQENSLLNCIPKDCANGLHKQT
          A  + +  VE+L A+  S+++   K     LH+ T
Subjt:  VGAYEKRIF-VEELGAQENSLLNCIPKDCANGLHKQT

XP_016203134.1 phosphoglucomutase, cytoplasmic [Arachis ipaensis]2.8e-0962.75Show/hide
Query:  CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE
        CYD LHGV GAY KRIFV+ELGAQENSLLNC+PK+   G H      + +E
Subjt:  CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE

XP_022139608.1 30S ribosomal protein S20, chloroplastic [Momordica charantia]4.4e-1050Show/hide
Query:  KASSPLQYSVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGVVGAYEKRIF-VEELGAQENSLLNCIPKDCANGLHKQT
        +A  PL+YSV C+A   KKVD AAKRA QAEKRRIYNKARKSEIKTR+KKV   +  D L     A  + +  +E+L A+  S+++   K     LH+ T
Subjt:  KASSPLQYSVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGVVGAYEKRIF-VEELGAQENSLLNCIPKDCANGLHKQT

TrEMBL top hitse value%identityAlignment
A0A2H5PTY0 Uncharacterized protein8.1e-1039.42Show/hide
Query:  NIAGNRSGHESAVVAPRLCRPARVRVLVDDKAS-------SPLQYSVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGV
        ++  N S H S      LC   ++   V    S        P+++SV CKA   KK D AAKRA QAEKRRIYNK+RKSE+KTR+KKV   +  D L   
Subjt:  NIAGNRSGHESAVVAPRLCRPARVRVLVDDKAS-------SPLQYSVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGV

Query:  VGAYEKRIF-VEELGAQENSLLNCIPKDCANGLHKQT
          A  + +  VE+L A+  S+++   K     LH+ T
Subjt:  VGAYEKRIF-VEELGAQENSLLNCIPKDCANGLHKQT

A0A444Z2W0 Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)1.4e-0962.75Show/hide
Query:  CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE
        CYD LHGV GAY KRIFV+ELGAQENSLLNC+PK+   G H      + +E
Subjt:  CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE

A0A6J1CG14 30S ribosomal protein S20, chloroplastic2.1e-1050Show/hide
Query:  KASSPLQYSVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGVVGAYEKRIF-VEELGAQENSLLNCIPKDCANGLHKQT
        +A  PL+YSV C+A   KKVD AAKRA QAEKRRIYNKARKSEIKTR+KKV   +  D L     A  + +  +E+L A+  S+++   K     LH+ T
Subjt:  KASSPLQYSVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGVVGAYEKRIF-VEELGAQENSLLNCIPKDCANGLHKQT

A0A7J6V148 30S ribosomal protein S20, chloroplastic-like1.1e-0951.04Show/hide
Query:  PLQYSVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGVVGAY-EKRIFVEELGAQENSLLNCIPKDCANGLHKQT
        P + SV C+A  TKK D AAKRA QAEKRRIYNK++KSE+KTR+KKV   D  DVL     A  E+ I +E+L A+  S ++   K  A  LH+ T
Subjt:  PLQYSVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGVVGAY-EKRIFVEELGAQENSLLNCIPKDCANGLHKQT

V4UL85 Uncharacterized protein8.1e-1039.42Show/hide
Query:  NIAGNRSGHESAVVAPRLCRPARVRVLVDDKAS-------SPLQYSVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGV
        ++  N S H S      LC   ++   V    S        P+++SV CKA   KK D AAKRA QAEKRRIYNK+RKSE+KTR+KKV   +  D L   
Subjt:  NIAGNRSGHESAVVAPRLCRPARVRVLVDDKAS-------SPLQYSVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGV

Query:  VGAYEKRIF-VEELGAQENSLLNCIPKDCANGLHKQT
          A  + +  VE+L A+  S+++   K     LH+ T
Subjt:  VGAYEKRIF-VEELGAQENSLLNCIPKDCANGLHKQT

SwissProt top hitse value%identityAlignment
P93804 Phosphoglucomutase, cytoplasmic 19.2e-1158.82Show/hide
Query:  CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE
        CYD LHGV GAY K IFVEELGA E+SLLNC+PK+   G H      + +E
Subjt:  CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE

P93805 Phosphoglucomutase, cytoplasmic 29.2e-1158.82Show/hide
Query:  CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE
        CYD LHGV GAY K IFVEELGA E+SLLNC+PK+   G H      + +E
Subjt:  CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE

Q9SGC1 Probable phosphoglucomutase, cytoplasmic 21.2e-1052.38Show/hide
Query:  IKKVANFD----CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE
        IKK+ ++     CYD LHGV GAY  RIFVEELGA E+SLLNC+PK+   G H      + +E
Subjt:  IKKVANFD----CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE

Q9SM60 Phosphoglucomutase, cytoplasmic6.3e-1260.78Show/hide
Query:  CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE
        CYD LHGV GAY KRIFV+ELGAQENSL+NC+PK+   G H      + +E
Subjt:  CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE

Q9ZSQ4 Phosphoglucomutase, cytoplasmic6.3e-1262.75Show/hide
Query:  CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE
        CYD LHGV GAY KRIFVEELGAQE+SLLNC+PK+   G H      + +E
Subjt:  CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE

Arabidopsis top hitse value%identityAlignment
AT1G23190.1 Phosphoglucomutase/phosphomannomutase family protein1.5e-1158.82Show/hide
Query:  CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE
        CYD LHGV GAY  RIFVEELGAQE++LLNC PK+   G H      + +E
Subjt:  CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE

AT1G70730.1 Phosphoglucomutase/phosphomannomutase family protein8.5e-1252.38Show/hide
Query:  IKKVANFD----CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE
        IKK+ ++     CYD LHGV GAY  RIFVEELGA E+SLLNC+PK+   G H      + +E
Subjt:  IKKVANFD----CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE

AT1G70730.2 Phosphoglucomutase/phosphomannomutase family protein8.5e-1252.38Show/hide
Query:  IKKVANFD----CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE
        IKK+ ++     CYD LHGV GAY  RIFVEELGA E+SLLNC+PK+   G H      + +E
Subjt:  IKKVANFD----CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE

AT1G70730.3 Phosphoglucomutase/phosphomannomutase family protein8.5e-1252.38Show/hide
Query:  IKKVANFD----CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE
        IKK+ ++     CYD LHGV GAY  RIFVEELGA E+SLLNC+PK+   G H      + +E
Subjt:  IKKVANFD----CYDVLHGVVGAYEKRIFVEELGAQENSLLNCIPKDCANGLHKQTKGMFLRE

AT3G15190.1 chloroplast 30S ribosomal protein S20, putative2.6e-0862.5Show/hide
Query:  PLQYSVACKATA-TKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKV
        P++  + C+A A TKK D AAKRA QAEKRR+YNK++KSE +TR+KKV
Subjt:  PLQYSVACKATA-TKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGGGAAGACGTGGCCTGCAAGAAAGTAAATCTGCACACCGGTGTGGTGCTCGCCACACCGGCTCCGATGCTTAAGTTAGCAAGCAGAACGGTCAAACCAGGCAA
AACCGGGGCAGATGGAAGCAGTGAGGACCTAACGGCGCCAGACGGGCTCGGCCCGCGCGAGTGGGCCGAGGTCGAGCACGGGGTCGGGCCAAAAACCCGACCCCTTCAGT
CTTGGCCCGTCCCACTTGCCGATTTTACCTCCTTGGTCCATCTCTCAGCCCGATTTCTCCTTGGTTGCCCTCGTCAGCTCCTTGTATATCGAGTCCAGCAACGTTGGGGT
TGTTTTCCTCCGAATATCGCCGGCAATCGCAGCGGCCACGAAAGTGCGGTGGTAGCTCCGAGGTTGTGTAGACCGGCCCGCGTGCGGGTGCTTGTCGATGATAAAGCTTC
GAGCCCACTTCAATACTCTGTGGCTTGCAAGGCGACTGCTACGAAAAAGGTTGATTGTGCCGCAAAGAGAGCTTGGCAGGCTGAGAAAAGACGCATTTACAACAAAGCCC
GGAAGTCTGAAATCAAAACCAGGATCAAGAAGGTAGCTAATTTTGACTGTTATGATGTTTTACATGGTGTTGTTGGAGCTTATGAAAAACGCATCTTCGTGGAAGAGCTT
GGTGCACAAGAAAACTCATTACTGAACTGCATACCGAAGGACTGCGCGAATGGTTTGCACAAACAGACGAAAGGAATGTTCCTCCGAGAATACCAGTTATGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGGGAAGACGTGGCCTGCAAGAAAGTAAATCTGCACACCGGTGTGGTGCTCGCCACACCGGCTCCGATGCTTAAGTTAGCAAGCAGAACGGTCAAACCAGGCAA
AACCGGGGCAGATGGAAGCAGTGAGGACCTAACGGCGCCAGACGGGCTCGGCCCGCGCGAGTGGGCCGAGGTCGAGCACGGGGTCGGGCCAAAAACCCGACCCCTTCAGT
CTTGGCCCGTCCCACTTGCCGATTTTACCTCCTTGGTCCATCTCTCAGCCCGATTTCTCCTTGGTTGCCCTCGTCAGCTCCTTGTATATCGAGTCCAGCAACGTTGGGGT
TGTTTTCCTCCGAATATCGCCGGCAATCGCAGCGGCCACGAAAGTGCGGTGGTAGCTCCGAGGTTGTGTAGACCGGCCCGCGTGCGGGTGCTTGTCGATGATAAAGCTTC
GAGCCCACTTCAATACTCTGTGGCTTGCAAGGCGACTGCTACGAAAAAGGTTGATTGTGCCGCAAAGAGAGCTTGGCAGGCTGAGAAAAGACGCATTTACAACAAAGCCC
GGAAGTCTGAAATCAAAACCAGGATCAAGAAGGTAGCTAATTTTGACTGTTATGATGTTTTACATGGTGTTGTTGGAGCTTATGAAAAACGCATCTTCGTGGAAGAGCTT
GGTGCACAAGAAAACTCATTACTGAACTGCATACCGAAGGACTGCGCGAATGGTTTGCACAAACAGACGAAAGGAATGTTCCTCCGAGAATACCAGTTATGGTAA
Protein sequenceShow/hide protein sequence
MKGEDVACKKVNLHTGVVLATPAPMLKLASRTVKPGKTGADGSSEDLTAPDGLGPREWAEVEHGVGPKTRPLQSWPVPLADFTSLVHLSARFLLGCPRQLLVYRVQQRWG
CFPPNIAGNRSGHESAVVAPRLCRPARVRVLVDDKASSPLQYSVACKATATKKVDCAAKRAWQAEKRRIYNKARKSEIKTRIKKVANFDCYDVLHGVVGAYEKRIFVEEL
GAQENSLLNCIPKDCANGLHKQTKGMFLREYQLW