; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0028954 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028954
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr8:33387203..33388355
RNA-Seq ExpressionLag0028954
SyntenyLag0028954
Gene Ontology termsNA
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4268750.1 unnamed protein product [Prunus armeniaca]1.8e-2131.45Show/hide
Query:  VIKLRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGF----------------------------------RDVHHLEFRLS
        +I+L   +SLPWL  GDFNEIL+ +EK GG  R  +QMQ FR  +D+C   D+GF                                    V HL    S
Subjt:  VIKLRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGF----------------------------------RDVHHLEFRLS

Query:  DHCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCWSLPTHRHSGS----------RSLFQRDGGGDGDFQSRDVQF---------------
        DH P+ I   +  +   +  R +FRFEE+W Q E+C  T++  W  P    SGS          R+  +  G   G F S   Q                
Subjt:  DHCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCWSLPTHRHSGS----------RSLFQRDGGGDGDFQSRDVQF---------------

Query:  ----------ARAQLENLLGEEEIYWRQRAQVDWLKWGDRNSRWFHQR
                    A+L++L+ + EIYWRQR++  WLK GDRN+++FH +
Subjt:  ----------ARAQLENLLGEEEIYWRQRAQVDWLKWGDRNSRWFHQR

KAA3469008.1 reverse transcriptase [Gossypium australe]2.4e-2132.92Show/hide
Query:  LRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGFR------------------------------------DVHHLEFRLSD
        L+ G++LPWLV GDFNEIL   EKQGG  R  +QM  FR  +DDCELAD+GF                                     +V HL+   SD
Subjt:  LRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGFR------------------------------------DVHHLEFRLSD

Query:  HCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCWS------------LPTHRH---SGSRSL----FQRDGGGDGDFQSRDVQFARAQLEN
        HCP+++   +  +R     +  FRF   W     C   VK+ W+            L    H    G R L    F+   G   +   RD   + A LE 
Subjt:  HCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCWS------------LPTHRH---SGSRSL----FQRDGGGDGDFQSRDVQFARAQLEN

Query:  LLG----------EEEIYWRQRAQVDWLKWGDRNSRWFHQ
        + G          +EEIYW QRA+ + LK GDRN+ +FH+
Subjt:  LLG----------EEEIYWRQRAQVDWLKWGDRNSRWFHQ

KAA3477739.1 reverse transcriptase [Gossypium australe]4.8e-2231.56Show/hide
Query:  LRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGFR------------------------------------DVHHLEFRLSD
        L+ G++LPWLV GDFNEIL   EKQGG  R  +Q+  FR  +DDCELAD+GF                                     +V HL+   SD
Subjt:  LRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGFR------------------------------------DVHHLEFRLSD

Query:  HCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCWSLPTHRHSGSRSLFQR--------DGGGDGDFQSRDVQF---------------ARA
        HCP+++   +  +R     +  FRF   W     C   VK+ W+       GS+ + +R             G+ + RD +F               + A
Subjt:  HCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCWSLPTHRHSGSRSLFQR--------DGGGDGDFQSRDVQF---------------ARA

Query:  QLENLLG----------EEEIYWRQRAQVDWLKWGDRNSRWFHQ
         LE + G          +EEIYW QRA+ +WLK GDRN+ +FH+
Subjt:  QLENLLG----------EEEIYWRQRAQVDWLKWGDRNSRWFHQ

TXG63781.1 hypothetical protein EZV62_010775 [Acer yangbiense]2.4e-2135.36Show/hide
Query:  KLRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGF-RDVHHLEFRLSDHCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFED
        +LR    LPWL GGDFNE++S ++K GG+ +++  M  F+  +D+C L D+GF R       +  DH P+L++       P    RR FRFE  W + E+
Subjt:  KLRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGF-RDVHHLEFRLSDHCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFED

Query:  CAATVKRCWSLPTHRHSG---SRSLFQRDGGGDGDFQSRDVQFARAQLENLLGEEEIYWRQRAQVDWLKWGDRNSRWFHQR
          A + + W       S    +R   Q  G   G       +    ++E +L  EE+YWRQR++ +WL+ GDRNS +FH+R
Subjt:  CAATVKRCWSLPTHRHSG---SRSLFQRDGGGDGDFQSRDVQFARAQLENLLGEEEIYWRQRAQVDWLKWGDRNSRWFHQR

XP_042950258.1 uncharacterized protein LOC122282367 [Carya illinoinensis]3.1e-2130.89Show/hide
Query:  LEGRAGCDVEVIKLRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGF-----------------------------------
        +E R  C   +  LR   + PWL  GDFNE+LS +EK GG  R + QM+ FR+ +D+CEL D+GF                                   
Subjt:  LEGRAGCDVEVIKLRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGF-----------------------------------

Query:  -RDVHHLEFRLSDHCPVLIEA---RQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCWSLPTHRHSGSRSLFQRDGGGD-------------------G
           VH L    SDH P+L+     ++E I  KK    +FR+E  W++ ++    V R W++     S  +S  +  GG                     G
Subjt:  -RDVHHLEFRLSDHCPVLIEA---RQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCWSLPTHRHSGSRSLFQRDGGGD-------------------G

Query:  DFQSRDVQFARAQLENLLGEEEIYWRQRAQVDWLKWGDRNSRWFHQ
        D   + ++  + +++ LL EEE+ WRQRA+  WLK GDRNS++FH+
Subjt:  DFQSRDVQFARAQLENLLGEEEIYWRQRAQVDWLKWGDRNSRWFHQ

TrEMBL top hitse value%identityAlignment
A0A2N9GDB5 Reverse transcriptase domain-containing protein1.3e-2535.16Show/hide
Query:  KLRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGFRD-----------------------------------VHHLEFRLSD
        +L    ++PW   GDFNE++  EEKQG + RS +QMQ FRDV+D+C L D+GF                                     V+HLE R SD
Subjt:  KLRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGFRD-----------------------------------VHHLEFRLSD

Query:  HCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCW-----SLPTH--RHSGSRSLFQRDGGGDGDFQSRDVQFARAQLENLLGEEEIYWRQR
        H P+ +   +  ++P K   R FRFEEVW   + C   +K  W      +P +  +H+   S+  RD           V   + +L NLL +EE  WRQR
Subjt:  HCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCW-----SLPTH--RHSGSRSLFQRDGGGDGDFQSRDVQFARAQLENLLGEEEIYWRQR

Query:  AQVDWLKWGDRNSRWFHQR
        ++V+WLK GD+N+R+FH R
Subjt:  AQVDWLKWGDRNSRWFHQR

A0A2N9HAW3 Uncharacterized protein8.1e-2329.87Show/hide
Query:  RVAEHYENHMLECPGREE---SSGIRRVALSGASGGLFGEGWWFMSF-----LEGRAGCDVEVIKLRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQM
        R AE +E   LE     E   SSG+  V +  AS       W F  F        R      + +L   +SLPW   GDFNE++  EEKQG + RS +QM
Subjt:  RVAEHYENHMLECPGREE---SSGIRRVALSGASGGLFGEGWWFMSF-----LEGRAGCDVEVIKLRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQM

Query:  QDFRDVIDDCELADMGFRD-----------------------------------VHHLEFRLSDHCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCA
        Q FRDV+D+C   D+GF                                     VHHL+ R SDH P+ + +    +RP    R++FRFEEVW   + C 
Subjt:  QDFRDVIDDCELADMGFRD-----------------------------------VHHLEFRLSDHCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCA

Query:  ATVKRCWSLP--------------------------------THRHSGSRSLFQRDGGGDGDFQSRDVQFARAQLENLLGEEEIYWRQRAQVDWLKWGDR
          +   W  P                                T  H   + L Q +       +   V   + +L +LL +EE  WRQR++ +WLK GDR
Subjt:  ATVKRCWSLP--------------------------------THRHSGSRSLFQRDGGGDGDFQSRDVQFARAQLENLLGEEEIYWRQRAQVDWLKWGDR

Query:  NSRWFHQR
        N+R+ H R
Subjt:  NSRWFHQR

A0A2N9HLP3 Uncharacterized protein8.1e-2331.56Show/hide
Query:  KLRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGFRD-----------------------------------VHHLEFRLSD
        +L   S+LPW   GDFNE++  +EKQG ++RS +QMQ FRDV+DDC   D+GF                                     V+HL+ R SD
Subjt:  KLRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGFRD-----------------------------------VHHLEFRLSD

Query:  HCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCW------------------------SLPTHRHSGSRS--------LFQRDGGGDGDFQ
        H P+ +         K  +R+ FRFEEVW   + C  TV   W                        S   H     ++        L Q +      +Q
Subjt:  HCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCW------------------------SLPTHRHSGSRS--------LFQRDGGGDGDFQ

Query:  SRDVQFARAQLENLLGEEEIYWRQRAQVDWLKWGDRNSRWFHQR
           V + R +L +LL +EE  WRQR++ +WLK GDRN+R+FH R
Subjt:  SRDVQFARAQLENLLGEEEIYWRQRAQVDWLKWGDRNSRWFHQR

A0A2N9IYC8 Reverse transcriptase domain-containing protein1.5e-2434.02Show/hide
Query:  KLRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGF-----------------------------------RDVHHLEFRLSD
        +L     LPW   GDFNE++  EEKQG +ARS +QMQ FRDV+D+C   D+GF                                     VHHLE R SD
Subjt:  KLRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGF-----------------------------------RDVHHLEFRLSD

Query:  HCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCW-----SLPTHR-----HSGSRSL--FQRDGGGDGDFQSRDVQ---------------
        H P+ +     FI  KK     FRFEEVW   + C A +K  W      +P +      H+  R L  + R   G+  F+ R+V+               
Subjt:  HCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCW-----SLPTHR-----HSGSRSL--FQRDGGGDGDFQSRDVQ---------------

Query:  -----FARAQLENLLGEEEIYWRQRAQVDWLKWGDRNSRWFHQR
               R +L +LL +EE  WRQR++ +WL+ GDRN+R+FH R
Subjt:  -----FARAQLENLLGEEEIYWRQRAQVDWLKWGDRNSRWFHQR

M5XQU7 Uncharacterized protein7.8e-2637.14Show/hide
Query:  LRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGFR----------------------------------DVHHLEFRLSDHC
        L   S LPW+  GDFNE+L   EK+GG  R  +QM  FRD I DC L DMGF                                    VHHLE   SDH 
Subjt:  LRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVIDDCELADMGFR----------------------------------DVHHLEFRLSDHC

Query:  PVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCWSLPTHRHSGSRSLFQRDGGGDGDFQSRDVQFARAQLENLLGEEEIYWRQRAQVDWLKWG
        P+L+EA    ++P +  R  FRFE +W Q EDC + +   W+      S + +L          +Q        +QL++LL  EE +W+QR++V WLK G
Subjt:  PVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCWSLPTHRHSGSRSLFQRDGGGDGDFQSRDVQFARAQLENLLGEEEIYWRQRAQVDWLKWG

Query:  DRNSRWFHQR
        DRN+R+FHQR
Subjt:  DRNSRWFHQR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGTATCTGCAGCGACGAACCCTGTTGACCAGGGTCGCCGAGCATTATGAAAACCATATGCTGGAATGTCCGGGGCGTGAGGAATCCTCAGGCATTCGGAGAGTTGC
ACTAAGTGGTGCTAGTGGTGGGTTGTTTGGGGAAGGGTGGTGGTTTATGTCTTTTCTGGAAGGAAGGGCTGGATGTGACGTTGAGGTCATAAAGTTGAGAGGGGGTTCCT
CGCTTCCATGGTTGGTGGGAGGGGATTTTAACGAAATTCTGAGCAGGGAAGAGAAACAAGGTGGTAACGCTCGAAGTTGGAAACAGATGCAAGACTTCCGAGATGTTATT
GATGATTGTGAGTTGGCGGATATGGGGTTCAGAGATGTGCACCACCTCGAATTTCGGCTATCAGATCACTGCCCTGTTCTGATTGAGGCTAGACAGGAATTCATTAGGCC
AAAGAAAGTTGTGCGTAGGATCTTCCGTTTTGAGGAGGTGTGGGCTCAGTTTGAGGATTGTGCGGCGACAGTCAAGAGATGTTGGTCTTTGCCAACTCATCGTCACAGTG
GGAGCAGGTCTCTATTTCAAAGAGATGGAGGAGGAGATGGTGATTTCCAGTCGAGGGATGTTCAATTTGCTCGGGCTCAGCTAGAGAATCTGCTTGGTGAAGAAGAGATC
TATTGGCGCCAACGAGCTCAGGTGGATTGGTTGAAATGGGGAGATAGGAACTCGAGATGGTTCCATCAGAGGCTACCCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGTATCTGCAGCGACGAACCCTGTTGACCAGGGTCGCCGAGCATTATGAAAACCATATGCTGGAATGTCCGGGGCGTGAGGAATCCTCAGGCATTCGGAGAGTTGC
ACTAAGTGGTGCTAGTGGTGGGTTGTTTGGGGAAGGGTGGTGGTTTATGTCTTTTCTGGAAGGAAGGGCTGGATGTGACGTTGAGGTCATAAAGTTGAGAGGGGGTTCCT
CGCTTCCATGGTTGGTGGGAGGGGATTTTAACGAAATTCTGAGCAGGGAAGAGAAACAAGGTGGTAACGCTCGAAGTTGGAAACAGATGCAAGACTTCCGAGATGTTATT
GATGATTGTGAGTTGGCGGATATGGGGTTCAGAGATGTGCACCACCTCGAATTTCGGCTATCAGATCACTGCCCTGTTCTGATTGAGGCTAGACAGGAATTCATTAGGCC
AAAGAAAGTTGTGCGTAGGATCTTCCGTTTTGAGGAGGTGTGGGCTCAGTTTGAGGATTGTGCGGCGACAGTCAAGAGATGTTGGTCTTTGCCAACTCATCGTCACAGTG
GGAGCAGGTCTCTATTTCAAAGAGATGGAGGAGGAGATGGTGATTTCCAGTCGAGGGATGTTCAATTTGCTCGGGCTCAGCTAGAGAATCTGCTTGGTGAAGAAGAGATC
TATTGGCGCCAACGAGCTCAGGTGGATTGGTTGAAATGGGGAGATAGGAACTCGAGATGGTTCCATCAGAGGCTACCCAAATGA
Protein sequenceShow/hide protein sequence
MRYLQRRTLLTRVAEHYENHMLECPGREESSGIRRVALSGASGGLFGEGWWFMSFLEGRAGCDVEVIKLRGGSSLPWLVGGDFNEILSREEKQGGNARSWKQMQDFRDVI
DDCELADMGFRDVHHLEFRLSDHCPVLIEARQEFIRPKKVVRRIFRFEEVWAQFEDCAATVKRCWSLPTHRHSGSRSLFQRDGGGDGDFQSRDVQFARAQLENLLGEEEI
YWRQRAQVDWLKWGDRNSRWFHQRLPK