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Lag0028979 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0028979
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon protein
Genome locationchr8:33739987..33740316
RNA-Seq ExpressionLag0028979
SyntenyLag0028979
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048199.1 putative mitochondrial protein [Cucumis melo var. makuwa]4.5e-0440.96Show/hide
Query:  SSSSVSEAVSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLRVTIALFWNVQAIV----RHLLSPTSKSANSIS
        +S+ + E+ S+ S+ ++T +FLLSNICNLVP+RLD+TNY+ W +QV S+L+   +LF ++   +    +HL S T  + + I+
Subjt:  SSSSVSEAVSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLRVTIALFWNVQAIV----RHLLSPTSKSANSIS

KAA0061282.1 putative mitochondrial protein [Cucumis melo var. makuwa]5.9e-0440.96Show/hide
Query:  SSSSVSEAVSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLRVTIALFWNVQAIV----RHLLSPTSKSANSIS
        +S+ + E+ S+ S+ ++T +FLLSNICNLVP+RLD+TNY+ W +QV S+L+   +LF ++   +    +HL S T  + + I+
Subjt:  SSSSVSEAVSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLRVTIALFWNVQAIV----RHLLSPTSKSANSIS

TYK08059.1 retrotransposon protein [Cucumis melo var. makuwa]4.5e-0440.96Show/hide
Query:  SSSSVSEAVSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLRVTIALFWNVQAIV----RHLLSPTSKSANSIS
        +S+ + E+ S+ S+ ++T +FLLSNICNLVP+RLD+TNY+ W +QV S+L+   +LF ++   +    +HL S T  + + I+
Subjt:  SSSSVSEAVSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLRVTIALFWNVQAIV----RHLLSPTSKSANSIS

TrEMBL top hitse value%identityAlignment
A0A5A7U426 Putative mitochondrial protein2.2e-0440.96Show/hide
Query:  SSSSVSEAVSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLRVTIALFWNVQAIV----RHLLSPTSKSANSIS
        +S+ + E+ S+ S+ ++T +FLLSNICNLVP+RLD+TNY+ W +QV S+L+   +LF ++   +    +HL S T  + + I+
Subjt:  SSSSVSEAVSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLRVTIALFWNVQAIV----RHLLSPTSKSANSIS

A0A5A7UZE5 Putative mitochondrial protein2.8e-0440.96Show/hide
Query:  SSSSVSEAVSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLRVTIALFWNVQAIV----RHLLSPTSKSANSIS
        +S+ + E+ S+ S+ ++T +FLLSNICNLVP+RLD+TNY+ W +QV S+L+   +LF ++   +    +HL S T  + + I+
Subjt:  SSSSVSEAVSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLRVTIALFWNVQAIV----RHLLSPTSKSANSIS

A0A5A7VGG0 Retrotransposon protein6.3e-0450Show/hide
Query:  MASNTSSSSVSEA------VSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLR
        MA+ +S S +SE        SS S    +++FLLSNICNLVP+RLD+TNY+ W +QV S+L+
Subjt:  MASNTSSSSVSEA------VSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLR

A0A5B7BD59 Retrotran_gag_3 domain-containing protein1.7e-0451.85Show/hide
Query:  SNTSSSSVSEAVSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLR
        ++T S+S S + SS S+ S+T I+LL+N+CNL+ V+LD+TNY+ W FQ  S+LR
Subjt:  SNTSSSSVSEAVSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLR

A0A5D3CCL2 Retrotransposon protein2.2e-0440.96Show/hide
Query:  SSSSVSEAVSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLRVTIALFWNVQAIV----RHLLSPTSKSANSIS
        +S+ + E+ S+ S+ ++T +FLLSNICNLVP+RLD+TNY+ W +QV S+L+   +LF ++   +    +HL S T  + + I+
Subjt:  SSSSVSEAVSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLRVTIALFWNVQAIV----RHLLSPTSKSANSIS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCTAATACTTCCTCCTCGAGTGTTTCAGAGGCTGTTTCCAGTGCTTCTCTTCAATCTAATACGTCAATCTTCCTCTTATCCAACATTTGTAATCTTGTTCCTGT
TCGATTGGACGCCACGAACTATCTGTTTTGGCATTTCCAGGTTGAATCTATGCTTCGTGTCACAATCGCACTCTTTTGGAACGTGCAAGCGATTGTGCGGCACTTACTCT
CGCCCACGAGTAAGTCAGCCAATTCGATCTCAGATCGCCGATGGCACAACGGGCCTATCTCGCAACCTCCACCCCCGTTCTTGGAAAACGGTTTTAGAAAACGGGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCTAATACTTCCTCCTCGAGTGTTTCAGAGGCTGTTTCCAGTGCTTCTCTTCAATCTAATACGTCAATCTTCCTCTTATCCAACATTTGTAATCTTGTTCCTGT
TCGATTGGACGCCACGAACTATCTGTTTTGGCATTTCCAGGTTGAATCTATGCTTCGTGTCACAATCGCACTCTTTTGGAACGTGCAAGCGATTGTGCGGCACTTACTCT
CGCCCACGAGTAAGTCAGCCAATTCGATCTCAGATCGCCGATGGCACAACGGGCCTATCTCGCAACCTCCACCCCCGTTCTTGGAAAACGGTTTTAGAAAACGGGGTTAG
Protein sequenceShow/hide protein sequence
MASNTSSSSVSEAVSSASLQSNTSIFLLSNICNLVPVRLDATNYLFWHFQVESMLRVTIALFWNVQAIVRHLLSPTSKSANSISDRRWHNGPISQPPPPFLENGFRKRG