; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0029007 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0029007
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr8:34182465..34186113
RNA-Seq ExpressionLag0029007
SyntenyLag0029007
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7121453.1 hypothetical protein RHSIM_Rhsim13G0116100 [Rhododendron simsii]4.0e-1849.09Show/hide
Query:  NSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAVGH
        +S  S H+ S R  F  +T G  G VRM N   SK  G+GDV L+T  G KL+L+DVR VP+I+++LIS GKL  +GY+ +FG  ++KL  GS VVA G 
Subjt:  NSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAVGH

Query:  RKSTLYKFKA
        + STLY  +A
Subjt:  RKSTLYKFKA

KAF7129225.1 hypothetical protein RHSIM_Rhsim10G0050800 [Rhododendron simsii]1.1e-1850Show/hide
Query:  NSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAVGH
        +S  S H+ S R  F  +T G  G VRM N   SK  G+GDV L+T  G KL+L+DVR VPNI+++LIS GKL  +GY+ +FG  ++KL  GS VVA G 
Subjt:  NSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAVGH

Query:  RKSTLYKFKA
        + STLY  +A
Subjt:  RKSTLYKFKA

KAF7129546.1 hypothetical protein RHSIM_Rhsim10G0154200 [Rhododendron simsii]1.2e-1749.06Show/hide
Query:  NSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAVGH
        +S  S H+ S R  F  +T G  G VRM N   SK  G+GDV L+T  G KL+L+DVR VP+I+++LIS GKL  +GY+ +FG  ++KL  GS +VA G 
Subjt:  NSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAVGH

Query:  RKSTLY
        + STLY
Subjt:  RKSTLY

KAG8364690.1 hypothetical protein BUALT_Bualt18G0024700 [Buddleja alternifolia]8.9e-1842.86Show/hide
Query:  LTNSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAV
        + +S  S HI   R +FT +T G+ G VRM N   ++  G+G+++L+T+ G +L+LRDVR +PNI++++IS GKL  DGY   FG  ++KL  GS + A 
Subjt:  LTNSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAV

Query:  GHRKSTLYKFKA
        G +K++LY  +A
Subjt:  GHRKSTLYKFKA

PKI48613.1 hypothetical protein CRG98_031032 [Punica granatum]1.2e-1744.64Show/hide
Query:  LTNSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAV
        + ++  S H+   R  F+ +T G +G VRM NG++ K  GIGDV L+TE G KL+L+ VR VP I+++LIS+G+L  +GY  EF + ++KL  GS +VA 
Subjt:  LTNSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAV

Query:  GHRKSTLYKFKA
        G +  TLY+ +A
Subjt:  GHRKSTLYKFKA

TrEMBL top hitse value%identityAlignment
A0A2I0IXX9 Integrase catalytic domain-containing protein5.6e-1844.64Show/hide
Query:  LTNSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAV
        + ++  S H+   R  F+ +T G +G VRM NG++ K  GIGDV L+TE G KL+L+ VR VP I+++LIS+G+L  +GY  EF + ++KL  GS +VA 
Subjt:  LTNSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAV

Query:  GHRKSTLYKFKA
        G +  TLY+ +A
Subjt:  GHRKSTLYKFKA

A0A484NPQ3 Uncharacterized protein5.3e-1637.5Show/hide
Query:  NSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAVGH
        +S  S HI S R  F+ +T G  G VRM N  +SK  G+GDV L+T  G +LVLRDVR VP+I++ LIS G L  +GY  +F   ++KL  GS ++A G 
Subjt:  NSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAVGH

Query:  RKSTLYKFKAADDPAAKIVNFDQSDPDPSIQKQLGSPGDGYRESPVVRRSNELKKSLRRV
        ++++LY  +      A++ + D +  D + + Q  S        P +RRS  ++K   R+
Subjt:  RKSTLYKFKAADDPAAKIVNFDQSDPDPSIQKQLGSPGDGYRESPVVRRSNELKKSLRRV

A0A4D8YHC2 CCHC-type domain-containing protein1.6e-1745.54Show/hide
Query:  LTNSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAV
        + +S  S HI   R +F  +TGG  G VRM N   ++ +GIGD+ L T+ G KLVLRDVR VP+I++++IS GKL  DGY   FG  ++KL  GS + A 
Subjt:  LTNSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAV

Query:  GHRKSTLYKFKA
        G ++++LY   A
Subjt:  GHRKSTLYKFKA

A0A5N6N2Q3 Integrase catalytic domain-containing protein6.9e-1637.5Show/hide
Query:  MCLSMDVASLVAHETTVVKLMKTLTNSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLAC
        +C   D+ + VAH+ +       + +S  + H+ S R  +T +T G  G V+M N   SK  G+GD+ LK + G +LVL +V+ VP+I+++LIS G L  
Subjt:  MCLSMDVASLVAHETTVVKLMKTLTNSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLAC

Query:  DGYRCEFGSRQYKLKFGSQVVAVGHRKSTLYKF--KAADDPAAKIVNFDQSD
        DGY   FG   +KL  GS +VA G R S LY    K + D    +VN D ++
Subjt:  DGYRCEFGSRQYKLKFGSQVVAVGHRKSTLYKF--KAADDPAAKIVNFDQSD

A0A5N6NVJ4 Uncharacterized protein1.8e-1636.84Show/hide
Query:  MCLSMDVASLVAHETTVVKLMKTLTNSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLAC
        +C   D+ + +AH+ +       + +S  + H+ S R  +T +T G  G+ +M N   SK  G+GD+ LK + G +LVL +V+ VP+I+++LIS G L  
Subjt:  MCLSMDVASLVAHETTVVKLMKTLTNSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLAC

Query:  DGYRCEFGSRQYKLKFGSQVVAVGHRKSTLY--KFKAADDPAAKIVNFDQSD
        DGY   FG   +KL  GS +VA G R S LY    K + D    +VN D +D
Subjt:  DGYRCEFGSRQYKLKFGSQVVAVGHRKSTLY--KFKAADDPAAKIVNFDQSD

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.9e-1641.96Show/hide
Query:  LTNSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAV
        + ++A S H    R LF  +  G  G V+M N   SK +GIGD+ +KT  G  LVL+DVR VP+++M+LIS   L  DGY   F +++++L  GS V+A 
Subjt:  LTNSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSRQYKLKFGSQVVAV

Query:  GHRKSTLYKFKA
        G  + TLY+  A
Subjt:  GHRKSTLYKFKA

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGCTTATCAATGGATGTGGCAAGTCTAGTGGCCCATGAGACAACTGTGGTTAAATTGATGAAAACACTTACAAACAGTGCAACGTCTGTACACATAGCTTCAGATAG
GAGTTTGTTCACATTATTCACAGGAGGACATCATGGTCTAGTGAGGATGGTGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTTAGTCTGAAGACAGAGTGTG
GAGACAAATTAGTACTGCGAGATGTCAGATTTGTGCCTAATATCAAGATGGATCTTATTTCTATTGGTAAATTGGCATGTGATGGTTACAGGTGTGAGTTTGGTAGTCGC
CAGTATAAACTCAAGTTCGGATCCCAGGTAGTGGCAGTTGGTCACAGGAAATCTACATTGTACAAATTTAAAGCTGCAGATGATCCAGCAGCAAAGATAGTCAATTTCGA
TCAGTCTGATCCCGATCCTTCAATTCAGAAACAATTGGGAAGTCCAGGAGATGGCTATCGTGAATCCCCAGTTGTCAGACGCTCGAATGAATTGAAGAAGTCGCTTAGGC
GAGTTGAGTCATCAAAGTGGAAGGCCAAAGTAGTTGCTAAGGTCAAATGTCAGGTCTCTAGCTTGGCAACAGCTGAAATTTCTTCAGCATTTTGTGTGGCAGCAATTTTG
GACCACCCCGATGTACAAGGAGCTGACGAGGACAACCGGGGAGAAATCGGGCTGGGAGATGGACCAAAGAGGCGAAACCGGCAAGCGAGACGGGGCAAGGCCGAAGGGGT
CAGGTTTTTGGCCCGACCCCCTGCTCGGCCTCGGCCATGGGCCGAGCCCGTTCGGTTTCGTCTGGTCCCCACCTCCTCTGGCTACCCGGTTTCACCTGGTTTGTCCCGAA
ACGCCTCCGAATACCTAAAATCCCTAGGAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGCTTATCAATGGATGTGGCAAGTCTAGTGGCCCATGAGACAACTGTGGTTAAATTGATGAAAACACTTACAAACAGTGCAACGTCTGTACACATAGCTTCAGATAG
GAGTTTGTTCACATTATTCACAGGAGGACATCATGGTCTAGTGAGGATGGTGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTTAGTCTGAAGACAGAGTGTG
GAGACAAATTAGTACTGCGAGATGTCAGATTTGTGCCTAATATCAAGATGGATCTTATTTCTATTGGTAAATTGGCATGTGATGGTTACAGGTGTGAGTTTGGTAGTCGC
CAGTATAAACTCAAGTTCGGATCCCAGGTAGTGGCAGTTGGTCACAGGAAATCTACATTGTACAAATTTAAAGCTGCAGATGATCCAGCAGCAAAGATAGTCAATTTCGA
TCAGTCTGATCCCGATCCTTCAATTCAGAAACAATTGGGAAGTCCAGGAGATGGCTATCGTGAATCCCCAGTTGTCAGACGCTCGAATGAATTGAAGAAGTCGCTTAGGC
GAGTTGAGTCATCAAAGTGGAAGGCCAAAGTAGTTGCTAAGGTCAAATGTCAGGTCTCTAGCTTGGCAACAGCTGAAATTTCTTCAGCATTTTGTGTGGCAGCAATTTTG
GACCACCCCGATGTACAAGGAGCTGACGAGGACAACCGGGGAGAAATCGGGCTGGGAGATGGACCAAAGAGGCGAAACCGGCAAGCGAGACGGGGCAAGGCCGAAGGGGT
CAGGTTTTTGGCCCGACCCCCTGCTCGGCCTCGGCCATGGGCCGAGCCCGTTCGGTTTCGTCTGGTCCCCACCTCCTCTGGCTACCCGGTTTCACCTGGTTTGTCCCGAA
ACGCCTCCGAATACCTAAAATCCCTAGGAGGATGA
Protein sequenceShow/hide protein sequence
MCLSMDVASLVAHETTVVKLMKTLTNSATSVHIASDRSLFTLFTGGHHGLVRMVNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMDLISIGKLACDGYRCEFGSR
QYKLKFGSQVVAVGHRKSTLYKFKAADDPAAKIVNFDQSDPDPSIQKQLGSPGDGYRESPVVRRSNELKKSLRRVESSKWKAKVVAKVKCQVSSLATAEISSAFCVAAIL
DHPDVQGADEDNRGEIGLGDGPKRRNRQARRGKAEGVRFLARPPARPRPWAEPVRFRLVPTSSGYPVSPGLSRNASEYLKSLGG