; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0029022 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0029022
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr8:34343467..34350429
RNA-Seq ExpressionLag0029022
SyntenyLag0029022
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_012839913.1 PREDICTED: uncharacterized protein LOC105960293 [Erythranthe guttata]5.9e-2761.4Show/hide
Query:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAFERSHFEWTGECEKAFRELKDYLSSTPLLTK
        M  GLKN GATYQR+V  MFA+ +GKNME Y+D+MLVKS+K   H +DL++ F ILRKY+MKLNP K +     F   G C+KAF ELK YL+S PLLTK
Subjt:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAFERSHFEWTGECEKAFRELKDYLSSTPLLTK

Query:  PLPSDELLLYVATS
        P P D LLLY+ATS
Subjt:  PLPSDELLLYVATS

XP_012857161.1 PREDICTED: uncharacterized protein LOC105976442 [Erythranthe guttata]2.2e-2655.04Show/hide
Query:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAF---------------ERSHFEWTGECEKAF
        M L LKN GATYQR+VN MFA  +GKNME Y+D+MLVKS+K   H +DL++ F  LRKY+MKLNP K +F                   FEW   C+KAF
Subjt:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAF---------------ERSHFEWTGECEKAF

Query:  RELKDYLSSTPLLTKPLPSDELLLYVATS
         ELK YL+S PLLTKP P D LLLY+A S
Subjt:  RELKDYLSSTPLLTKPLPSDELLLYVATS

XP_022156571.1 uncharacterized protein LOC111023448 [Momordica charantia]2.9e-2644.12Show/hide
Query:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAF------------------------------
        M  GLKN GATYQRMVNRMFA L+GKNME Y+D+MLVKS K++ HE DL EAF+ILRKY+MKLNP+K  F                              
Subjt:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAF------------------------------

Query:  ------------------------ERSHFEWTGECEKAFRELKDYLSSTPLLTKPLPSDELLLYVATSDT
                                ++  FEWT ECE AF+ELK YL + PLL K +  DE  LY+  S T
Subjt:  ------------------------ERSHFEWTGECEKAFRELKDYLSSTPLLTKPLPSDELLLYVATSDT

XP_022158579.1 uncharacterized protein LOC111025033 [Momordica charantia]3.2e-2541.85Show/hide
Query:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAF------------------------------
        M  GLKN GATYQRMVNRMFA L+GKNME YVD+MLVKS K++ HE DL EAF+ILRKY+MKLNP+K  F                              
Subjt:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAF------------------------------

Query:  --------------------------------------ERSHFEWTGECEKAFRELKDYLSSTPLLTKPLPSDELLLYVATSDT
                                               +  FEWT ECE AF+ELK  L + PLL KP+  D L LY+A S+T
Subjt:  --------------------------------------ERSHFEWTGECEKAFRELKDYLSSTPLLTKPLPSDELLLYVATSDT

XP_022892635.1 uncharacterized protein LOC111407412 [Olea europaea var. sylvestris]2.0e-2755.46Show/hide
Query:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAF----ERSHFEWTGECEKAFRELKDYLSSTP
        M  GLKN GATYQR+VN MFA L+GK ME YVD+MLVKSL++  H S +++ F+IL+KY MKLNP +  F     R  F+WT EC++AF  LK +L   P
Subjt:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAF----ERSHFEWTGECEKAFRELKDYLSSTP

Query:  LLTKPLPSDELLLYVATSD
        LL+KP   + LLLY+A SD
Subjt:  LLTKPLPSDELLLYVATSD

TrEMBL top hitse value%identityAlignment
A0A2N9GRM8 Uncharacterized protein1.4e-2657.76Show/hide
Query:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAFERSHFEWTGECEKAFRELKDYLSSTPLLTK
        M  GLKN GATYQR++NRMF   +G+N+E YVD+MLVKS +   H  DL E F+ LRKYQMKLNPSK A     FEWT EC++AF ELK YL+  PLL+ 
Subjt:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAFERSHFEWTGECEKAFRELKDYLSSTPLLTK

Query:  PLPSDELLLYVATSDT
            +EL LY+A S T
Subjt:  PLPSDELLLYVATSDT

A0A2N9H7Q3 RNase H domain-containing protein7.0e-2656.41Show/hide
Query:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAFERSH---FEWTGECEKAFRELKDYLSSTPL
        M  GLKN GATYQR+VN+MF   +G+N+E YVD+MLVKS K   H +DL E F+ LRKY MKLNP+K  F  S    F+WT EC++AF ELK YL+S PL
Subjt:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAFERSH---FEWTGECEKAFRELKDYLSSTPL

Query:  LTKPLPSDELLLYVATS
        L+     +EL LY+A S
Subjt:  LTKPLPSDELLLYVATS

A0A2N9IUA0 Ribonuclease H7.0e-2652.71Show/hide
Query:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAFE-------------RSHFEWTGECEKAFRE
        M  GLKN GATYQR++NRMF   +G+N E YVD+MLVKS +   H +DL E F+ LRKYQMKLNPSK AF              +  FEWT EC++AF E
Subjt:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAFE-------------RSHFEWTGECEKAFRE

Query:  LKDYLSSTPLLTKPLPSDELLLYVATSDT
        LK YL+  PLL+      EL LY+A S T
Subjt:  LKDYLSSTPLLTKPLPSDELLLYVATSDT

A0A6J1DVC6 Ribonuclease H1.4e-2644.12Show/hide
Query:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAF------------------------------
        M  GLKN GATYQRMVNRMFA L+GKNME Y+D+MLVKS K++ HE DL EAF+ILRKY+MKLNP+K  F                              
Subjt:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAF------------------------------

Query:  ------------------------ERSHFEWTGECEKAFRELKDYLSSTPLLTKPLPSDELLLYVATSDT
                                ++  FEWT ECE AF+ELK YL + PLL K +  DE  LY+  S T
Subjt:  ------------------------ERSHFEWTGECEKAFRELKDYLSSTPLLTKPLPSDELLLYVATSDT

A0A6J1DZU0 Ribonuclease H1.6e-2541.85Show/hide
Query:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAF------------------------------
        M  GLKN GATYQRMVNRMFA L+GKNME YVD+MLVKS K++ HE DL EAF+ILRKY+MKLNP+K  F                              
Subjt:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAF------------------------------

Query:  --------------------------------------ERSHFEWTGECEKAFRELKDYLSSTPLLTKPLPSDELLLYVATSDT
                                               +  FEWT ECE AF+ELK  L + PLL KP+  D L LY+A S+T
Subjt:  --------------------------------------ERSHFEWTGECEKAFRELKDYLSSTPLLTKPLPSDELLLYVATSDT

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.65.6e-0427.54Show/hide
Query:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAFERSHFEWTG-----ECEKAFRELKDYLSST
        M  GLKN  AT+QR +N +   LL K+   Y+D+++V S     H   L   FE L K  +KL   K  F +    + G     +  K   E  + +   
Subjt:  MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAFERSHFEWTG-----ECEKAFRELKDYLSST

Query:  PLLTKPLPSDELLLYVATSDTTKQDIPKWRSSPWPCSR
        P+ TKP    E+  ++  +   ++ IP +     P ++
Subjt:  PLLTKPLPSDELLLYVATSDTTKQDIPKWRSSPWPCSR

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTAGGTTTGAAGAACGTCGGGGCAACGTACCAACGGATGGTAAACCGCATGTTCGCTCATTTATTGGGAAAGAACATGGAGGCGTACGTGGATAATATGCTAGT
GAAGAGCTTGAAGTCTCAATGCCATGAGTCCGACCTCAACGAGGCTTTCGAGATACTCCGGAAGTACCAGATGAAACTAAATCCGAGTAAGTGGGCTTTTGAGAGATCAC
ATTTTGAATGGACTGGAGAGTGCGAAAAAGCTTTTAGGGAACTGAAAGACTATCTGAGTTCGACCCCGCTTTTGACCAAGCCACTCCCTAGCGACGAGCTACTGCTCTAC
GTGGCAACCTCAGATACGACCAAACAAGATATCCCCAAGTGGAGAAGCTCACCCTGGCCTTGTTCACGTTGGCCAAAAGACTGTGAGCATATGGTCAGCCCACTCGTACA
GGCCGAGTTCCTTTTGCCTCCGTTCGGTCCCTGCTTCCCCAGTTCGCCCTTGTTCCACTCGGTTCAGCCTAGGATCGTCTCCGAGAGCCTAGAAAACATCCGAGTGCAGG
TGGCCTACACCACACCGGTGTGCAGCAGTTTTGACTGGTCTTGCAGGTCACGTATTCCTCGTCTTCAACAAATTTACTGCTGGTATCACGTGAAGGTCAGAAAAAAAAAT
CGGTGGCCGGAAAAATCGTCGGCGATCGTCGGAAAAGTCGTCGGCGGCGGTCGGAAAAGTCGTCGGAAACTTCGCCGGTCGACGGTGGCCGGCGGTTGTCGGAAAAGTCA
AGGAGTCGCATGGAAGAAGAGAGGAGAGAGTTACGATCTGAAGTCGTTGAAAACGAAAACGCCGTCGTCGACCTGCACGCGCGTTGGATTTGAAGTCGTTGAGCACAAAA
ATGTCGGGTTGAGCCTGCACTGGAAACGAGTGGTGGCCGATTTGTTCGTATTCTCCAACGAGCGATTGACGATTTCTGAGCAGTTGAGAATAAAGAGCGGTGAGCGATTA
ACGGCGGTGACGCGAACGGTGGTCGGTGGCCACGAAAGGAGTAAAGAGAAAGAAGGGAAGAGGAGAAAAGATTGTTGCATGCTCAGACAACATCAATCAGTGGGCGTGCC
GGAGTGGTTATCGGGCATGACTAGAAATCATGTGGGCTCTGCCCGCGCAGATCTAACGATGAGCTTTAGATTTATTCCTTCTTGCTTGGTTCCATATCTGAGCTATGAGC
GACGACAAGGAAGTGGATTCAGGAGGTTCCAGATCTGGGCTGTGAGTGACGGCGGGGCAGTGGGTTCCAGATCTGGGAGTGCAGCTACAACGAGTGTTCCAGATTTGGAC
GTTCTTCATTTTAAAAAAATGGTTAAAGAAAAAAGGGAAGAAAGAAATAGGGAAGAAGAAGATGAAAGAAGAAGAAAATTGGAGAAAAAAAGGGAAATGATGGCGGCGAT
GGTCCCACAATCACAGTTGGTGAAGGTGACGGTGAAGAAGAAGAATAGGGAGAAAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTAGGTTTGAAGAACGTCGGGGCAACGTACCAACGGATGGTAAACCGCATGTTCGCTCATTTATTGGGAAAGAACATGGAGGCGTACGTGGATAATATGCTAGT
GAAGAGCTTGAAGTCTCAATGCCATGAGTCCGACCTCAACGAGGCTTTCGAGATACTCCGGAAGTACCAGATGAAACTAAATCCGAGTAAGTGGGCTTTTGAGAGATCAC
ATTTTGAATGGACTGGAGAGTGCGAAAAAGCTTTTAGGGAACTGAAAGACTATCTGAGTTCGACCCCGCTTTTGACCAAGCCACTCCCTAGCGACGAGCTACTGCTCTAC
GTGGCAACCTCAGATACGACCAAACAAGATATCCCCAAGTGGAGAAGCTCACCCTGGCCTTGTTCACGTTGGCCAAAAGACTGTGAGCATATGGTCAGCCCACTCGTACA
GGCCGAGTTCCTTTTGCCTCCGTTCGGTCCCTGCTTCCCCAGTTCGCCCTTGTTCCACTCGGTTCAGCCTAGGATCGTCTCCGAGAGCCTAGAAAACATCCGAGTGCAGG
TGGCCTACACCACACCGGTGTGCAGCAGTTTTGACTGGTCTTGCAGGTCACGTATTCCTCGTCTTCAACAAATTTACTGCTGGTATCACGTGAAGGTCAGAAAAAAAAAT
CGGTGGCCGGAAAAATCGTCGGCGATCGTCGGAAAAGTCGTCGGCGGCGGTCGGAAAAGTCGTCGGAAACTTCGCCGGTCGACGGTGGCCGGCGGTTGTCGGAAAAGTCA
AGGAGTCGCATGGAAGAAGAGAGGAGAGAGTTACGATCTGAAGTCGTTGAAAACGAAAACGCCGTCGTCGACCTGCACGCGCGTTGGATTTGAAGTCGTTGAGCACAAAA
ATGTCGGGTTGAGCCTGCACTGGAAACGAGTGGTGGCCGATTTGTTCGTATTCTCCAACGAGCGATTGACGATTTCTGAGCAGTTGAGAATAAAGAGCGGTGAGCGATTA
ACGGCGGTGACGCGAACGGTGGTCGGTGGCCACGAAAGGAGTAAAGAGAAAGAAGGGAAGAGGAGAAAAGATTGTTGCATGCTCAGACAACATCAATCAGTGGGCGTGCC
GGAGTGGTTATCGGGCATGACTAGAAATCATGTGGGCTCTGCCCGCGCAGATCTAACGATGAGCTTTAGATTTATTCCTTCTTGCTTGGTTCCATATCTGAGCTATGAGC
GACGACAAGGAAGTGGATTCAGGAGGTTCCAGATCTGGGCTGTGAGTGACGGCGGGGCAGTGGGTTCCAGATCTGGGAGTGCAGCTACAACGAGTGTTCCAGATTTGGAC
GTTCTTCATTTTAAAAAAATGGTTAAAGAAAAAAGGGAAGAAAGAAATAGGGAAGAAGAAGATGAAAGAAGAAGAAAATTGGAGAAAAAAAGGGAAATGATGGCGGCGAT
GGTCCCACAATCACAGTTGGTGAAGGTGACGGTGAAGAAGAAGAATAGGGAGAAAGAATAA
Protein sequenceShow/hide protein sequence
MSLGLKNVGATYQRMVNRMFAHLLGKNMEAYVDNMLVKSLKSQCHESDLNEAFEILRKYQMKLNPSKWAFERSHFEWTGECEKAFRELKDYLSSTPLLTKPLPSDELLLY
VATSDTTKQDIPKWRSSPWPCSRWPKDCEHMVSPLVQAEFLLPPFGPCFPSSPLFHSVQPRIVSESLENIRVQVAYTTPVCSSFDWSCRSRIPRLQQIYCWYHVKVRKKN
RWPEKSSAIVGKVVGGGRKSRRKLRRSTVAGGCRKSQGVAWKKRGESYDLKSLKTKTPSSTCTRVGFEVVEHKNVGLSLHWKRVVADLFVFSNERLTISEQLRIKSGERL
TAVTRTVVGGHERSKEKEGKRRKDCCMLRQHQSVGVPEWLSGMTRNHVGSARADLTMSFRFIPSCLVPYLSYERRQGSGFRRFQIWAVSDGGAVGSRSGSAATTSVPDLD
VLHFKKMVKEKREERNREEEDERRRKLEKKREMMAAMVPQSQLVKVTVKKKNREKE