CuGenDBv2

Gene ID	Lag0029038
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	30S ribosomal protein S1-like protein A
Genome location	chr8:34514658..34515029
RNA-Seq Expression	Lag0029038
Synteny	Lag0029038
Gene Ontology terms	GO:0043489 - RNA stabilization (biological process) GO:0005840 - ribosome (cellular component) GO:0003723 - RNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7016396.1 30S ribosomal protein S1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]

3.4e-32

85.06

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Query:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT
        K  D+VV VVVSG ENKLDINVG DL GTMLTKEVLPLYDKE+EFLMCDLD  AESFM+NGKMGLV YDDA SRGPGPGRPVVETGT
Subjt:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT

XP_022939869.1 uncharacterized protein LOC111445605 isoform X2 [Cucurbita moschata]

9.8e-32

86.21

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Query:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT
        K  DVVV VVVSG ENKLDINVG DL GTMLTKEVLPLYDKE+EFLMCDLD  AESFM+NGKMGLV YDDAVSRG GPGRPVVETGT
Subjt:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT

XP_022994056.1 uncharacterized protein LOC111489862 [Cucurbita maxima]

6.8e-33

87.36

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Query:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT
        K  DVVV VVVSG ENKLDINVG DL GTMLTKEVLPLYDKE+EFLMCDLD  AESFM+NGKMGLV YDDAVSRGPGPGRPVVETGT
Subjt:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT

XP_023551503.1 uncharacterized protein LOC111809291 [Cucurbita pepo subsp. pepo]

6.8e-33

87.36

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Query:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT
        K  DVVV VVVSG ENKLDINVG DL GTMLTKEVLPLYDKE+EFLMCDLD  AESFM+NGKMGLV YDDAVSRGPGPGRPVVETGT
Subjt:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT

XP_038886053.1 protein PIGMENT DEFECTIVE 338, chloroplastic [Benincasa hispida]

2.6e-32

86.21

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Query:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT
        K  DVVV VVVSG ENKLDINVG DL GTMLTKEVLPLYDKEMEFLMCDLD  AESFM+NGKMGLV Y+DA SRGPGPGRPVVETGT
Subjt:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BXF7 uncharacterized protein LOC111006579 isoform X1

8.1e-32

85.06

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Query:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT
        K  DVVV VVVSG ENKLDINVG DL GTMLTKEVLPLYDKEM+FLMCD D  AESFMVNGKMGLV Y+DAVSRGPG GRPVVETGT
Subjt:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT

A0A6J1BZ75 uncharacterized protein LOC111006579 isoform X2

8.1e-32

85.06

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Query:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT
        K  DVVV VVVSG ENKLDINVG DL GTMLTKEVLPLYDKEM+FLMCD D  AESFMVNGKMGLV Y+DAVSRGPG GRPVVETGT
Subjt:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT

A0A6J1FIE7 uncharacterized protein LOC111445605 isoform X2

4.7e-32

86.21

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Query:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT
        K  DVVV VVVSG ENKLDINVG DL GTMLTKEVLPLYDKE+EFLMCDLD  AESFM+NGKMGLV YDDAVSRG GPGRPVVETGT
Subjt:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT

A0A6J1FMS2 uncharacterized protein LOC111445605 isoform X1

4.7e-32

86.21

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Query:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT
        K  DVVV VVVSG ENKLDINVG DL GTMLTKEVLPLYDKE+EFLMCDLD  AESFM+NGKMGLV YDDAVSRG GPGRPVVETGT
Subjt:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT

A0A6J1JY23 uncharacterized protein LOC111489862

3.3e-33

87.36

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Query:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT
        K  DVVV VVVSG ENKLDINVG DL GTMLTKEVLPLYDKE+EFLMCDLD  AESFM+NGKMGLV YDDAVSRGPGPGRPVVETGT
Subjt:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGT

SwissProt top hits

e value

%identity

Alignment

Q9M9H4 Protein PIGMENT DEFECTIVE 338, chloroplastic

5.1e-23

61.11

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Query:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDD---AVSRGPGPGRPVVETGT
        K  D VV VVVSG ENKLD+N+G D+ GTMLTKE+LPLYDKE+++L+CDL   AE F+VNGKMG+V  DD    ++     GRPVVE GT
Subjt:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDD---AVSRGPGPGRPVVETGT

Arabidopsis top hits

e value

%identity

Alignment

AT1G71720.1 Nucleic acid-binding proteins superfamily

3.6e-24

61.11

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Query:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDD---AVSRGPGPGRPVVETGT
        K  D VV VVVSG ENKLD+N+G D+ GTMLTKE+LPLYDKE+++L+CDL   AE F+VNGKMG+V  DD    ++     GRPVVE GT
Subjt:  KHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDD---AVSRGPGPGRPVVETGT

Sequences

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CDS sequence

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ATGTGGGACTTTGGACGCACTCCCAACACCAAACATAGAGATGTTGTGGTTGATGTGGTTGTCTCAGGTATCGAAAACAAGCTCGATATCAACGTGGGAGTGGATTTATT
CGGAACAATGTTGACAAAAGAAGTGCTTCCCTTGTATGACAAAGAGATGGAGTTTTTGATGTGTGATCTTGACAATGTTGCTGAGTCTTTTATGGTGAATGGAAAGATGG
GGTTGGTGATATATGATGATGCTGTTAGCCGTGGACCGGGGCCAGGGCGCCCTGTCGTGGAGACTGGCACAGAGTTTTGTTTGCTGAGGTTCTGGGAAGGACACTCAGTG
GTTGTCCATTGCTCTCGACAAGAAGGTACTTTCGACGGTTAG

mRNA sequence

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Protein sequence

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MWDFGRTPNTKHRDVVVDVVVSGIENKLDINVGVDLFGTMLTKEVLPLYDKEMEFLMCDLDNVAESFMVNGKMGLVIYDDAVSRGPGPGRPVVETGTEFCLLRFWEGHSV
VVHCSRQEGTFDG

Lag0029038 (gene) of Sponge gourd (AG-4) v1 genome