; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0029039 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0029039
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description30S ribosomal protein S1-like protein A isoform X2
Genome locationchr8:34515992..34516704
RNA-Seq ExpressionLag0029039
SyntenyLag0029039
Gene Ontology termsGO:0043489 - RNA stabilization (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046848.1 30S ribosomal protein S1-like protein A isoform X2 [Cucumis melo var. makuwa]1.2e-4266.67Show/hide
Query:  TDNAIADAQSSKAESLLLRLFQFNFSVLRRRRAQLMRWAAKKDADPCGTSTLSIRTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGV
        TDNA+A     +++  L   F FN S LRR RAQLM+W  KKDA+PCGTS L+   SAFL VPRL   RISNS  CSTSN S+NCN+SK L FR R+S +
Subjt:  TDNAIADAQSSKAESLLLRLFQFNFSVLRRRRAQLMRWAAKKDADPCGTSTLSIRTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGV

Query:  FCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLNKPSPAPISNGVS
         CSRND+FDN SSTQL DKP  DGIQEIDE+GLLNKPSPAPISNGVS
Subjt:  FCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLNKPSPAPISNGVS

XP_004140950.1 protein PIGMENT DEFECTIVE 338, chloroplastic isoform X1 [Cucumis sativus]6.0e-3175.51Show/hide
Query:  STLSIRTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLNKPSPAPISNGVS
        S+ S+R SAFL VPRL   RISNS  CSTS  S+NCNKSK L FR R+S +FCSRND+FDN SSTQL DKPR DGIQEIDE+GLLNKPSPAPISNGVS
Subjt:  STLSIRTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLNKPSPAPISNGVS

XP_016901967.1 PREDICTED: 30S ribosomal protein S1 homolog A isoform X2 [Cucumis melo]5.3e-3572.32Show/hide
Query:  MRWAAKKDADPCGTSTLSIRTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLN
        M+W  KKDA+PCGTS L+   SAFL VPRL   RISNS  CSTSN S+NCN+SK L FR R+S + CSRND+FDN SSTQL DKP  DGIQEIDE+GLLN
Subjt:  MRWAAKKDADPCGTSTLSIRTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLN

Query:  KPSPAPISNGVS
        KPSPAPISNGVS
Subjt:  KPSPAPISNGVS

XP_022134276.1 uncharacterized protein LOC111006579 isoform X1 [Momordica charantia]4.6e-3176.34Show/hide
Query:  RTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLNKPSPAPISNGVS
        R S+F+ VPR++T  IS+ K  STSNWSNN NKSK  PFRERNS VFCSRNDVFDNFSSTQL D+P+E+GIQEIDELGLL+KPSPAP+SNGVS
Subjt:  RTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLNKPSPAPISNGVS

XP_022134277.1 uncharacterized protein LOC111006579 isoform X2 [Momordica charantia]4.6e-3176.34Show/hide
Query:  RTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLNKPSPAPISNGVS
        R S+F+ VPR++T  IS+ K  STSNWSNN NKSK  PFRERNS VFCSRNDVFDNFSSTQL D+P+E+GIQEIDELGLL+KPSPAP+SNGVS
Subjt:  RTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLNKPSPAPISNGVS

TrEMBL top hitse value%identityAlignment
A0A1S4E163 30S ribosomal protein S1 homolog A isoform X22.5e-3572.32Show/hide
Query:  MRWAAKKDADPCGTSTLSIRTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLN
        M+W  KKDA+PCGTS L+   SAFL VPRL   RISNS  CSTSN S+NCN+SK L FR R+S + CSRND+FDN SSTQL DKP  DGIQEIDE+GLLN
Subjt:  MRWAAKKDADPCGTSTLSIRTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLN

Query:  KPSPAPISNGVS
        KPSPAPISNGVS
Subjt:  KPSPAPISNGVS

A0A5A7TVE5 30S ribosomal protein S1-like protein A isoform X25.7e-4366.67Show/hide
Query:  TDNAIADAQSSKAESLLLRLFQFNFSVLRRRRAQLMRWAAKKDADPCGTSTLSIRTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGV
        TDNA+A     +++  L   F FN S LRR RAQLM+W  KKDA+PCGTS L+   SAFL VPRL   RISNS  CSTSN S+NCN+SK L FR R+S +
Subjt:  TDNAIADAQSSKAESLLLRLFQFNFSVLRRRRAQLMRWAAKKDADPCGTSTLSIRTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGV

Query:  FCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLNKPSPAPISNGVS
         CSRND+FDN SSTQL DKP  DGIQEIDE+GLLNKPSPAPISNGVS
Subjt:  FCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLNKPSPAPISNGVS

A0A5D3BZ92 30S ribosomal protein S1-like protein A isoform X22.5e-3572.32Show/hide
Query:  MRWAAKKDADPCGTSTLSIRTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLN
        M+W  KKDA+PCGTS L+   SAFL VPRL   RISNS  CSTSN S+NCN+SK L FR R+S + CSRND+FDN SSTQL DKP  DGIQEIDE+GLLN
Subjt:  MRWAAKKDADPCGTSTLSIRTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLN

Query:  KPSPAPISNGVS
        KPSPAPISNGVS
Subjt:  KPSPAPISNGVS

A0A6J1BXF7 uncharacterized protein LOC111006579 isoform X12.2e-3176.34Show/hide
Query:  RTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLNKPSPAPISNGVS
        R S+F+ VPR++T  IS+ K  STSNWSNN NKSK  PFRERNS VFCSRNDVFDNFSSTQL D+P+E+GIQEIDELGLL+KPSPAP+SNGVS
Subjt:  RTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLNKPSPAPISNGVS

A0A6J1BZ75 uncharacterized protein LOC111006579 isoform X22.2e-3176.34Show/hide
Query:  RTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLNKPSPAPISNGVS
        R S+F+ VPR++T  IS+ K  STSNWSNN NKSK  PFRERNS VFCSRNDVFDNFSSTQL D+P+E+GIQEIDELGLL+KPSPAP+SNGVS
Subjt:  RTSAFLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLNKPSPAPISNGVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTATGCAGGGAGATCCCTACATACCGGCCAACAAACCAGACCACAACACAAGGCCAATTTCAGGCCCATTGTCGAGCCCCAGCCCACGGCCCACCTCTCCCACT
GCAGCTCCTCAGGCCCAGAAACACGCGCCGAAGAATACGAACAGAAACGGATAATGCAATTGCAGATGCACAGTCATCCAAAGCCGAAAGCCTTCTTCTTCGGCTGTTTC
AATTCAATTTCAGTGTCCTGCGTCGACGCCGAGCTCAGCTCATGAGGTGGGCAGCAAAAAAAGATGCTGATCCTTGCGGTACTTCAACCCTTTCCATTAGAACTTCAGCA
TTTCTCACCGTTCCCAGACTTCTAACTGCACGAATCTCAAATTCCAAGTTCTGTTCCACTTCTAATTGGTCCAATAACTGTAACAAATCTAAGAATTTGCCATTTCGGGA
AAGAAATAGCGGAGTGTTTTGCTCTAGGAATGATGTTTTTGATAATTTCTCGAGCACCCAGTTGCTGGATAAGCCTCGAGAGGATGGAATTCAAGAGATTGATGAGCTTG
GTTTGTTGAATAAGCCCTCTCCTGCTCCTATAAGCAATGGGGTTTCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGTATGCAGGGAGATCCCTACATACCGGCCAACAAACCAGACCACAACACAAGGCCAATTTCAGGCCCATTGTCGAGCCCCAGCCCACGGCCCACCTCTCCCACT
GCAGCTCCTCAGGCCCAGAAACACGCGCCGAAGAATACGAACAGAAACGGATAATGCAATTGCAGATGCACAGTCATCCAAAGCCGAAAGCCTTCTTCTTCGGCTGTTTC
AATTCAATTTCAGTGTCCTGCGTCGACGCCGAGCTCAGCTCATGAGGTGGGCAGCAAAAAAAGATGCTGATCCTTGCGGTACTTCAACCCTTTCCATTAGAACTTCAGCA
TTTCTCACCGTTCCCAGACTTCTAACTGCACGAATCTCAAATTCCAAGTTCTGTTCCACTTCTAATTGGTCCAATAACTGTAACAAATCTAAGAATTTGCCATTTCGGGA
AAGAAATAGCGGAGTGTTTTGCTCTAGGAATGATGTTTTTGATAATTTCTCGAGCACCCAGTTGCTGGATAAGCCTCGAGAGGATGGAATTCAAGAGATTGATGAGCTTG
GTTTGTTGAATAAGCCCTCTCCTGCTCCTATAAGCAATGGGGTTTCATAA
Protein sequenceShow/hide protein sequence
MVVCREIPTYRPTNQTTTQGQFQAHCRAPAHGPPLPLQLLRPRNTRRRIRTETDNAIADAQSSKAESLLLRLFQFNFSVLRRRRAQLMRWAAKKDADPCGTSTLSIRTSA
FLTVPRLLTARISNSKFCSTSNWSNNCNKSKNLPFRERNSGVFCSRNDVFDNFSSTQLLDKPREDGIQEIDELGLLNKPSPAPISNGVS