; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0029066 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0029066
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionUnknown protein
Genome locationchr8:34909335..34911653
RNA-Seq ExpressionLag0029066
SyntenyLag0029066
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF6734224.1 hypothetical protein FQA47_013229 [Oryzias melastigma]3.6e-0529.02Show/hide
Query:  QEKSSLRKSTSVLSSYHQANRPI-QEINKPTDRSRRSTSQQADHPRDQQANRPIKKINKSAGRSSKRINKLTSRSNRSSSQQTDQ-RDQQANRPIK----
        Q K    + T+ L+   Q N+P  Q+ NKPT++  +  +QQ + P ++Q NRP K  N+   R  K  N+ T   NR ++QQTD+  +QQ ++P K    
Subjt:  QEKSSLRKSTSVLSSYHQANRPI-QEINKPTDRSRRSTSQQADHPRDQQANRPIKKINKSAGRSSKRINKLTSRSNRSSSQQTDQ-RDQQANRPIK----

Query:  --KINKSAGRSSKRSTSQPTDQEDQQVSRPIIQEDQQANKPI-QEIITPTGRSSKKINKPNRSIQEIINLTGRSSKKINKSNRSIQEIINLTD
          + N+   + + R T++P    ++Q +RP    +QQ ++P  Q+   PT R +++ N+P ++ ++    T ++ K  ++ N+  ++    TD
Subjt:  --KINKSAGRSSKRSTSQPTDQEDQQVSRPIIQEDQQANKPI-QEIITPTGRSSKKINKPNRSIQEIINLTGRSSKKINKSNRSIQEIINLTD
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATTCAAAATCAAACCCCCTTGAAGTCAAGTTGGATGACATGGTAGTCGTCAAGGTGCTGATTGAAATGGACGAAGACTTGTCGGAGGTGAAGTCGATCACTGTTGC
AATCTCCAAGCTTGCTTCTCGTTTGCAAGAGATAAATTTTCGCTTTTGTAGGAGGGAATCGAACACAATAGTCCACTATGTTGCTAGATTAGCTTGTAATGTTCATTTTG
ATGAGAACCAGGAGAAATCCTCTTTGCGAAAATCGACATCAGTCTTGAGCTCATATCATCAAGCCAACAGGCCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGA
AGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAAC
AAGCCGATCCAACAGATCATCAAGCCAACAGACTGATCAAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAA
CAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAGGAAGATCAACAAGCCAACAAGCCGATCCAAGAGATCATCACGCCAACAGGCCGATCA
TCCAAGAAGATCAACAAGCCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGGCCGATCATCCAAGAAGATCAACAAATCCAATAGGTCGATCCAGGAGATCATCAA
CCTAACAGACCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAACCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTATTCAAAATCAAACCCCCTTGAAGTCAAGTTGGATGACATGGTAGTCGTCAAGGTGCTGATTGAAATGGACGAAGACTTGTCGGAGGTGAAGTCGATCACTGTTGC
AATCTCCAAGCTTGCTTCTCGTTTGCAAGAGATAAATTTTCGCTTTTGTAGGAGGGAATCGAACACAATAGTCCACTATGTTGCTAGATTAGCTTGTAATGTTCATTTTG
ATGAGAACCAGGAGAAATCCTCTTTGCGAAAATCGACATCAGTCTTGAGCTCATATCATCAAGCCAACAGGCCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGA
AGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGGATCAACAAGCTAAC
AAGCCGATCCAACAGATCATCAAGCCAACAGACTGATCAAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAA
CAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAGGAAGATCAACAAGCCAACAAGCCGATCCAAGAGATCATCACGCCAACAGGCCGATCA
TCCAAGAAGATCAACAAGCCCAATAGGTCGATCCAGGAGATCATCAACCTAACAGGCCGATCATCCAAGAAGATCAACAAATCCAATAGGTCGATCCAGGAGATCATCAA
CCTAACAGACCGATCATCCAAGAAGATCAACAAGCCAATAAGCCGATCCAAGAGATCATCAACCTAG
Protein sequenceShow/hide protein sequence
MYSKSNPLEVKLDDMVVVKVLIEMDEDLSEVKSITVAISKLASRLQEINFRFCRRESNTIVHYVARLACNVHFDENQEKSSLRKSTSVLSSYHQANRPIQEINKPTDRSR
RSTSQQADHPRDQQANRPIKKINKSAGRSSKRINKLTSRSNRSSSQQTDQRDQQANRPIKKINKSAGRSSKRSTSQPTDQEDQQVSRPIIQEDQQANKPIQEIITPTGRS
SKKINKPNRSIQEIINLTGRSSKKINKSNRSIQEIINLTDRSSKKINKPISRSKRSST