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Lag0029084 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0029084
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr8:35150320..35150811
RNA-Seq ExpressionLag0029084
SyntenyLag0029084
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON41419.1 hypothetical protein TorRG33x02_338080 [Trema orientale]1.0e-1540.67Show/hide
Query:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLTTHNPPKQALASNPNESSNRKN------
        +++AG  +S  D IL++L RLG EYD  V  IT   E   L  + +LLL QE RIE++ A   DG+  SVNL     P      N   +S  KN      
Subjt:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLTTHNPPKQALASNPNESSNRKN------

Query:  --------SNGRPQRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPN
                 N   +R WN     QCQLC +FGHTV RCYYRF++ F G N
Subjt:  --------SNGRPQRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPN

XP_010656394.1 PREDICTED: uncharacterized protein LOC104880653 [Vitis vinifera]7.6e-1639.61Show/hide
Query:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLTTHNPPKQALASNPNESSNRKNSN----
        ++ AG KIS TDHIL I+  LG EY+  + +I+ K  SP LQ V S L+  E RI   ++ N D SM   +  ++  P  +  SN   SS  +N N    
Subjt:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLTTHNPPKQALASNPNESSNRKNSN----

Query:  ------------GRPQRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPNMP
                    GR + +     KPQCQLC +FGHTV RC+YR++  F G NMP
Subjt:  ------------GRPQRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPNMP

XP_022136882.1 dr1-associated corepressor homolog isoform X1 [Momordica charantia]4.5e-2445.77Show/hide
Query:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLT----THNPPKQALASNPNESSNRKNSN
        ++AAG+K++  DHI+HIL  L  E++ TV++I+ + ++  LQ+VYSLLL+ E R ERN +IN DG++ SVNLT      N  +      P   +NR  ++
Subjt:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLT----THNPPKQALASNPNESSNRKNSN

Query:  GRP--QRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPN
        G P  +R WN+N++PQCQ+  +FGHT  RCY RFE+ F GPN
Subjt:  GRP--QRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPN

XP_022136883.1 dr1-associated corepressor homolog isoform X2 [Momordica charantia]4.5e-2445.77Show/hide
Query:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLT----THNPPKQALASNPNESSNRKNSN
        ++AAG+K++  DHI+HIL  L  E++ TV++I+ + ++  LQ+VYSLLL+ E R ERN +IN DG++ SVNLT      N  +      P   +NR  ++
Subjt:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLT----THNPPKQALASNPNESSNRKNSN

Query:  GRP--QRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPN
        G P  +R WN+N++PQCQ+  +FGHT  RCY RFE+ F GPN
Subjt:  GRP--QRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPN

XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]2.5e-2749.66Show/hide
Query:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLTTHNPPK-----QALASNPNESSNRK--
        ++ AG+K+S  DHI+HIL  LGPE+D  +++IT ++    LQ+V SLLL QE R ERNL IN DGS+ SVNLT ++  K     Q+   NP++S+  +  
Subjt:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLTTHNPPK-----QALASNPNESSNRK--

Query:  ---NSNGRPQRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPNMPP
           N+    +R W  N+KPQCQ+C RFGHT  RCY RFER F GPNM P
Subjt:  ---NSNGRPQRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPNMPP

TrEMBL top hitse value%identityAlignment
A0A2P5AY04 Uncharacterized protein4.8e-1640.67Show/hide
Query:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLTTHNPPKQALASNPNESSNRKN------
        +++AG  +S  D IL++L RLG EYD  V  IT   E   L  + +LLL QE RIE++ A   DG+  SVNL     P      N   +S  KN      
Subjt:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLTTHNPPKQALASNPNESSNRKN------

Query:  --------SNGRPQRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPN
                 N   +R WN     QCQLC +FGHTV RCYYRF++ F G N
Subjt:  --------SNGRPQRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPN

A0A6J1C6N9 dr1-associated corepressor homolog isoform X12.2e-2445.77Show/hide
Query:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLT----THNPPKQALASNPNESSNRKNSN
        ++AAG+K++  DHI+HIL  L  E++ TV++I+ + ++  LQ+VYSLLL+ E R ERN +IN DG++ SVNLT      N  +      P   +NR  ++
Subjt:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLT----THNPPKQALASNPNESSNRKNSN

Query:  GRP--QRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPN
        G P  +R WN+N++PQCQ+  +FGHT  RCY RFE+ F GPN
Subjt:  GRP--QRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPN

A0A6J1C8R2 dr1-associated corepressor homolog isoform X22.2e-2445.77Show/hide
Query:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLT----THNPPKQALASNPNESSNRKNSN
        ++AAG+K++  DHI+HIL  L  E++ TV++I+ + ++  LQ+VYSLLL+ E R ERN +IN DG++ SVNLT      N  +      P   +NR  ++
Subjt:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLT----THNPPKQALASNPNESSNRKNSN

Query:  GRP--QRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPN
        G P  +R WN+N++PQCQ+  +FGHT  RCY RFE+ F GPN
Subjt:  GRP--QRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPN

A0A6J1DLT9 uncharacterized protein LOC1110217571.2e-2749.66Show/hide
Query:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLTTHNPPK-----QALASNPNESSNRK--
        ++ AG+K+S  DHI+HIL  LGPE+D  +++IT ++    LQ+V SLLL QE R ERNL IN DGS+ SVNLT ++  K     Q+   NP++S+  +  
Subjt:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLTTHNPPK-----QALASNPNESSNRK--

Query:  ---NSNGRPQRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPNMPP
           N+    +R W  N+KPQCQ+C RFGHT  RCY RFER F GPNM P
Subjt:  ---NSNGRPQRKWNNNSKPQCQLCRRFGHTVQRCYYRFERWFQGPNMPP

A0A803PVN2 Uncharacterized protein3.7e-1637.5Show/hide
Query:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLTTHNP------PKQALASNPNESSNRKN
        +S AG  +  +D I+H+L  LGPEYDP V   T   ++P  + + SLLLT E+R+ER+  +N   S    NLTT +P      P    A+NPN       
Subjt:  MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLTTHNP------PKQALASNPNESSNRKN

Query:  SNGRPQRKWNNNSKPQ---CQLCRRFGHTVQRCYYRFERWFQGP
        SN    R +     P    CQ+C + GHT   C+YRF++ F  P
Subjt:  SNGRPQRKWNNNSKPQ---CQLCRRFGHTVQRCYYRFERWFQGP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCAGCCGGTAGAAAGATTTCGCACACTGACCATATTCTACACATTCTTGTCAGACTAGGACCGGAATATGATCCAACAGTGACAATGATCACCGAAAAAGATGA
GTCTCCACCCCTGCAAAAGGTATATTCTTTGTTATTGACTCAAGAAAACAGGATTGAAAGAAATCTTGCAATCAATCCTGATGGGTCCATGGCTTCTGTGAACTTGACCA
CACACAATCCGCCTAAACAAGCACTTGCATCGAATCCTAATGAGTCCTCAAACCGAAAGAACTCCAATGGGAGACCTCAACGAAAGTGGAATAATAACAGCAAGCCACAG
TGTCAACTGTGTAGACGATTTGGACATACGGTGCAACGATGCTACTATCGCTTTGAACGATGGTTTCAAGGTCCCAATATGCCTCCCCTGGATAGTCTTCTCAAGTTGGG
GCTCCTCATCCGATTGCTTTTGGCGGACAACAAGCTTATCAACCATCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCAGCCGGTAGAAAGATTTCGCACACTGACCATATTCTACACATTCTTGTCAGACTAGGACCGGAATATGATCCAACAGTGACAATGATCACCGAAAAAGATGA
GTCTCCACCCCTGCAAAAGGTATATTCTTTGTTATTGACTCAAGAAAACAGGATTGAAAGAAATCTTGCAATCAATCCTGATGGGTCCATGGCTTCTGTGAACTTGACCA
CACACAATCCGCCTAAACAAGCACTTGCATCGAATCCTAATGAGTCCTCAAACCGAAAGAACTCCAATGGGAGACCTCAACGAAAGTGGAATAATAACAGCAAGCCACAG
TGTCAACTGTGTAGACGATTTGGACATACGGTGCAACGATGCTACTATCGCTTTGAACGATGGTTTCAAGGTCCCAATATGCCTCCCCTGGATAGTCTTCTCAAGTTGGG
GCTCCTCATCCGATTGCTTTTGGCGGACAACAAGCTTATCAACCATCTATGA
Protein sequenceShow/hide protein sequence
MSAAGRKISHTDHILHILVRLGPEYDPTVTMITEKDESPPLQKVYSLLLTQENRIERNLAINPDGSMASVNLTTHNPPKQALASNPNESSNRKNSNGRPQRKWNNNSKPQ
CQLCRRFGHTVQRCYYRFERWFQGPNMPPLDSLLKLGLLIRLLLADNKLINHL