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Lag0029089 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0029089
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr8:35212969..35213496
RNA-Seq ExpressionLag0029089
SyntenyLag0029089
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_027061983.1 uncharacterized protein LOC113688376 [Coffea arabica]5.0e-1329.68Show/hide
Query:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED
        P   ++K   DAA  +    TG+G+I  N HG +V A         EA   E  AI+  +++A       IE+ SDC   +  ++      C ++  +ED
Subjt:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED

Query:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYD
        I  L   F  C+F ++PR  N  + ++A+ A +S  N  W  S P W+ +L   D
Subjt:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYD

XP_027088768.1 uncharacterized protein LOC113710130 [Coffea arabica]1.1e-1230.32Show/hide
Query:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED
        P    +K   DAA+      TGIGV+  N  G ++   A       E  + E  AI+ GM++A   +   +E+ SDC + +  ++K  +   N+ V +ED
Subjt:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED

Query:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYD
        I N+  LF +C+F ++ R+ N  A S+AK A +   N  W    P W+    + D
Subjt:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYD

XP_027093792.1 uncharacterized protein LOC113714198 [Coffea arabica]9.1e-1531.61Show/hide
Query:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED
        P   +++   DAA  +I   TG+G+I  N HG +V A         EA   E  AI+  +++       KIE+ SDC   +  ++      C ++  +ED
Subjt:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED

Query:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYD
        I  L N F  C F ++PR +N  + +LA+ A RS  N  W  S P W+  L   D
Subjt:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYD

XP_027119939.1 uncharacterized protein LOC113736922 [Coffea arabica]1.3e-1331.06Show/hide
Query:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED
        PD+ ++K   DAA  +     G+G+I  + HGN+V A  +       A +    AI++G+ +A      +IE+  DC  AI+ + K  E    ++  +ED
Subjt:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED

Query:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYDRSISAH
        I  LS +F  CSF ++ R+ N  A  LA+ A +   N VW  S P W+   ++ D   + H
Subjt:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYDRSISAH

XP_038902513.1 uncharacterized protein LOC120089172 [Benincasa hispida]8.8e-1836.36Show/hide
Query:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED
        P +  +K  VDAAW   P  +G   I  ++ G++     S I+  +  PLAE   + +G++L    +  KI + SDC  AI    K      +V V +E+
Subjt:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED

Query:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGS
        IW +S +F   +F YIPR +N LAD +AK+ +  GINDVW+ S
Subjt:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGS

TrEMBL top hitse value%identityAlignment
A0A6P6S751 uncharacterized protein LOC1136883762.4e-1329.68Show/hide
Query:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED
        P   ++K   DAA  +    TG+G+I  N HG +V A         EA   E  AI+  +++A       IE+ SDC   +  ++      C ++  +ED
Subjt:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED

Query:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYD
        I  L   F  C+F ++PR  N  + ++A+ A +S  N  W  S P W+ +L   D
Subjt:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYD

A0A6P6U8A0 uncharacterized protein LOC1137083895.4e-1329.8Show/hide
Query:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED
        P   +++   DAA  +    TG+G+I  N HG +V A     +   +    E  AI+  +++A      KIE+ SDC   +  ++      C ++  +ED
Subjt:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED

Query:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSL
        I  L N F  C F ++PR +N+ + +LA+ A RS  N  W    P W+  L
Subjt:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSL

A0A6P6UE91 uncharacterized protein LOC1137101305.4e-1330.32Show/hide
Query:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED
        P    +K   DAA+      TGIGV+  N  G ++   A       E  + E  AI+ GM++A   +   +E+ SDC + +  ++K  +   N+ V +ED
Subjt:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED

Query:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYD
        I N+  LF +C+F ++ R+ N  A S+AK A +   N  W    P W+    + D
Subjt:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYD

A0A6P6UVX3 uncharacterized protein LOC1137141984.4e-1531.61Show/hide
Query:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED
        P   +++   DAA  +I   TG+G+I  N HG +V A         EA   E  AI+  +++       KIE+ SDC   +  ++      C ++  +ED
Subjt:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED

Query:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYD
        I  L N F  C F ++PR +N  + +LA+ A RS  N  W  S P W+  L   D
Subjt:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYD

A0A6P6WWZ3 uncharacterized protein LOC1137369226.3e-1431.06Show/hide
Query:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED
        PD+ ++K   DAA  +     G+G+I  + HGN+V A  +       A +    AI++G+ +A      +IE+  DC  AI+ + K  E    ++  +ED
Subjt:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED

Query:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYDRSISAH
        I  LS +F  CSF ++ R+ N  A  LA+ A +   N VW  S P W+   ++ D   + H
Subjt:  IWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYDRSISAH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G10000.1 Ribonuclease H-like superfamily protein3.1e-0532.31Show/hide
Query:  FVDAAWLSIPPETGIG-VICMNHHGNVVGASASFIEMDFEAPL-AELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVEDIWNL--
        +VDAAW       G G V     H      + S     F +PL AE  AIK  M  AL  +   + + SD        SK+     N  V + +I+ L  
Subjt:  FVDAAWLSIPPETGIG-VICMNHHGNVVGASASFIEMDFEAPL-AELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVEDIWNL--

Query:  -----SNLFAECSFKYIPRELNSLADSLAK
              N F   SF++IPR +NS+AD+ AK
Subjt:  -----SNLFAECSFKYIPRELNSLADSLAK

AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein8.8e-0830.3Show/hide
Query:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPL-AELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVE
        PD D +  F DAAW     + G G +  N    +          +   PL AE  A+   ++ A +    K+ + SD  Q I  ++ +  P       + 
Subjt:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPL-AELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVE

Query:  DIWNLSNLFAECSFKYIPRELNSLADSLAKKA
        DI NLS  FA+ SF ++PR  N +AD LAK +
Subjt:  DIWNLSNLFAECSFKYIPRELNSLADSLAKKA

AT4G29090.1 Ribonuclease H-like superfamily protein4.3e-0726.72Show/hide
Query:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED
        P    +K   DA W       GIG +  N  G V    A  +        AEL+A++  +     F    +   SD    I+ ++   E W +++  ++D
Subjt:  PDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQVED

Query:  IWNLSNLFAECSFKYIPRELNSLADSLAKKA
        +  L + F E  F +IPRE N+LA+ +A+++
Subjt:  IWNLSNLFAECSFKYIPRELNSLADSLAKKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGAGCCAGCGAAAAGGGCGGAGGATCAACATCCGGATTCTGATCTCCTCAAATTTTTTGTCGATGCAGCCTGGTTATCCATCCCTCCAGAAACAGGAATTGGAGT
CATCTGCATGAACCACCATGGTAATGTAGTTGGCGCTAGTGCTTCCTTCATAGAAATGGATTTTGAAGCCCCCCTTGCTGAGTTGAAGGCCATAAAAGAAGGGATGAAGC
TTGCTTTAAATTTTGACTGCCCTAAAATCGAAATTTATTCTGACTGTCTACAAGCAATTAAATTCGTGTCAAAAGCCACAGAGCCTTGGTGTAATGTGGAGGTGCAAGTG
GAGGATATTTGGAATTTGTCTAATCTGTTTGCAGAATGTAGTTTTAAGTATATCCCAAGAGAGCTGAATTCCCTAGCTGATAGCTTAGCTAAGAAGGCTAAACGATCGGG
TATTAATGATGTATGGGTTGGTTCAATCCCAGAGTGGATTGTTTCGTTGGTCGAGTATGACCGTTCTATCTCTGCCCACGTGGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGAGCCAGCGAAAAGGGCGGAGGATCAACATCCGGATTCTGATCTCCTCAAATTTTTTGTCGATGCAGCCTGGTTATCCATCCCTCCAGAAACAGGAATTGGAGT
CATCTGCATGAACCACCATGGTAATGTAGTTGGCGCTAGTGCTTCCTTCATAGAAATGGATTTTGAAGCCCCCCTTGCTGAGTTGAAGGCCATAAAAGAAGGGATGAAGC
TTGCTTTAAATTTTGACTGCCCTAAAATCGAAATTTATTCTGACTGTCTACAAGCAATTAAATTCGTGTCAAAAGCCACAGAGCCTTGGTGTAATGTGGAGGTGCAAGTG
GAGGATATTTGGAATTTGTCTAATCTGTTTGCAGAATGTAGTTTTAAGTATATCCCAAGAGAGCTGAATTCCCTAGCTGATAGCTTAGCTAAGAAGGCTAAACGATCGGG
TATTAATGATGTATGGGTTGGTTCAATCCCAGAGTGGATTGTTTCGTTGGTCGAGTATGACCGTTCTATCTCTGCCCACGTGGCGTAA
Protein sequenceShow/hide protein sequence
MFEPAKRAEDQHPDSDLLKFFVDAAWLSIPPETGIGVICMNHHGNVVGASASFIEMDFEAPLAELKAIKEGMKLALNFDCPKIEIYSDCLQAIKFVSKATEPWCNVEVQV
EDIWNLSNLFAECSFKYIPRELNSLADSLAKKAKRSGINDVWVGSIPEWIVSLVEYDRSISAHVA