| GenBank top hits | e value | %identity | Alignment |
|---|
| AAF16534.1 T26F17.17 [Arabidopsis thaliana] | 8.9e-65 | 49.33 | Show/hide |
Query: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDI
MF+EFKKEMTKEFEMTDIGLMSYYLGIEVKQ ++ IFI+QEGYAKE+LKKF MDD+NPV P SLVGSLRYLTCTRPDI
Subjt: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDI
Query: LYPVGIISRFMEEPTTTHCKMAKMILRYIKGTIGV-----------------------------------------------------------------
LY VG++SR+ME PTTTH K AK ILRYIKGT+
Subjt: LYPVGIISRFMEEPTTTHCKMAKMILRYIKGTIGV-----------------------------------------------------------------
Query: -------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
+ P +IFVDNKSAIALAKN VFH R+KHIDT++HYIR+CV+ K+V+L+Y+K+ DQ ADIFTKPLK E FI+MRSLLGV
Subjt: -------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
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| AAG50698.1 copia-type polyprotein, putative [Arabidopsis thaliana] | 1.5e-64 | 49.33 | Show/hide |
Query: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDI
MF+EFKKEMTKEFEMTDIGLMSYYLGIEVKQ ++ IFI+QEGYAKE+LKKF MDD+NPV P SLVGSLRYLTCTRPDI
Subjt: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDI
Query: LYPVGIISRFMEEPTTTHCKMAKMILRYIKGTIGV-----------------------------------------------------------------
LY VG++SR+ME PTTTH K AK ILRYIKGT+
Subjt: LYPVGIISRFMEEPTTTHCKMAKMILRYIKGTIGV-----------------------------------------------------------------
Query: -------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
+ P +IFVDNKSAIALAKN VFH R+KHIDT++HYIR+CV+ K+V+L+Y+K+ DQ ADIFTKPLK E FI+MRSLLGV
Subjt: -------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
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| AAG60117.1 copia-type polyprotein, putative [Arabidopsis thaliana] | 1.5e-64 | 49.33 | Show/hide |
Query: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDI
MF+EFKKEMTKEFEMTDIGLMSYYLGIEVKQ ++ IFI+QEGYAKE+LKKF MDD+NPV P SLVGSLRYLTCTRPDI
Subjt: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDI
Query: LYPVGIISRFMEEPTTTHCKMAKMILRYIKGTIGV-----------------------------------------------------------------
LY VG++SR+ME PTTTH K AK ILRYIKGT+
Subjt: LYPVGIISRFMEEPTTTHCKMAKMILRYIKGTIGV-----------------------------------------------------------------
Query: -------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
+ P +IFVDNKSAIALAKN VFH R+KHIDT++HYIR+CV+ K+V+L+Y+K+ DQ ADIFTKPLK E FI+MRSLLGV
Subjt: -------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
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| CAB75469.1 copia-type reverse transcriptase-like protein [Arabidopsis thaliana] | 5.7e-72 | 65.32 | Show/hide |
Query: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIPSLVGSLRYLTCTRPDILYPVGIISRFMEEPTTTHCKMA
MF+EFKKEMTKEFEMTDIGLMSYYLGIEVKQ ++ IFI+QEGYAKE+LKKF MDD+N PSLVGSLRYLTCTRPDILY VG++SR+ME PTTTH K A
Subjt: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIPSLVGSLRYLTCTRPDILYPVGIISRFMEEPTTTHCKMA
Query: KMILRYIKGTIGV------------------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQA
K ILRYIKGT+ + P +IFVDNKSAIALAKN VFH R+KHIDT++HYIR+CV+ K+V+L+Y+K+ DQ
Subjt: KMILRYIKGTIGV------------------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQA
Query: ADIFTKPLKLETFIRMRSLLGV
ADIFTKPLK E FI+MRSLLGV
Subjt: ADIFTKPLKLETFIRMRSLLGV
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| KAG5047158.1 hypothetical protein JHK86_016564 [Glycine max] | 1.2e-64 | 48.68 | Show/hide |
Query: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDI
MF+EFKK+M+ EFEMTD+GLM+YYLGI+VKQ + IFI+QEGYAKE+LKKF MDDANPVG P SLVGSLRYLTCTRPDI
Subjt: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDI
Query: LYPVGIISRFMEEPTTTHCKMAKMILRYIKGTIGV-----------------------------------------------------------------
LY VG++SR+ME PTTTH K AK ILRYIKGT
Subjt: LYPVGIISRFMEEPTTTHCKMAKMILRYIKGTIGV-----------------------------------------------------------------
Query: -------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGVTN
+ PMEI VDNKSA+ALAKN VFH R+KHIDT++H+IR+ + KEV+LKY+ SQDQAADIFTKPLKLETF+++RS+LGVTN
Subjt: -------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGVTN
Query: QV
QV
Subjt: QV
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A2N9FM67 Integrase catalytic domain-containing protein | 1.3e-64 | 55.79 | Show/hide |
Query: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIPSLVGSLRYLTCTRPDILYPVGIISRFMEEPTTTHCKMA
MF++FKK M +EFEMTDIGLM+YYLGIEVKQ+E+ IFISQEGYAKE+LKK+ M D PSLVGSLRYLTCTRPDILY VG++S +ME PT TH K+A
Subjt: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIPSLVGSLRYLTCTRPDILYPVGIISRFMEEPTTTHCKMA
Query: KMILRYIKGTI--GVLQGP------------------------------------------------MEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYI
K ILRY+KGT+ G+L P EIFV+NKSA+ALAKN VFH R+KHIDT++H+I
Subjt: KMILRYIKGTI--GVLQGP------------------------------------------------MEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYI
Query: RDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
R+C+A KEV+L+++KSQDQ ADIFTKPLK +TF ++R+LLGV
Subjt: RDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
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| Q9C536 Copia-type polyprotein, putative | 7.3e-65 | 49.33 | Show/hide |
Query: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDI
MF+EFKKEMTKEFEMTDIGLMSYYLGIEVKQ ++ IFI+QEGYAKE+LKKF MDD+NPV P SLVGSLRYLTCTRPDI
Subjt: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDI
Query: LYPVGIISRFMEEPTTTHCKMAKMILRYIKGTIGV-----------------------------------------------------------------
LY VG++SR+ME PTTTH K AK ILRYIKGT+
Subjt: LYPVGIISRFMEEPTTTHCKMAKMILRYIKGTIGV-----------------------------------------------------------------
Query: -------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
+ P +IFVDNKSAIALAKN VFH R+KHIDT++HYIR+CV+ K+V+L+Y+K+ DQ ADIFTKPLK E FI+MRSLLGV
Subjt: -------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
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| Q9C739 Copia-type polyprotein, putative | 7.3e-65 | 49.33 | Show/hide |
Query: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDI
MF+EFKKEMTKEFEMTDIGLMSYYLGIEVKQ ++ IFI+QEGYAKE+LKKF MDD+NPV P SLVGSLRYLTCTRPDI
Subjt: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDI
Query: LYPVGIISRFMEEPTTTHCKMAKMILRYIKGTIGV-----------------------------------------------------------------
LY VG++SR+ME PTTTH K AK ILRYIKGT+
Subjt: LYPVGIISRFMEEPTTTHCKMAKMILRYIKGTIGV-----------------------------------------------------------------
Query: -------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
+ P +IFVDNKSAIALAKN VFH R+KHIDT++HYIR+CV+ K+V+L+Y+K+ DQ ADIFTKPLK E FI+MRSLLGV
Subjt: -------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
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| Q9M197 Copia-type reverse transcriptase-like protein | 2.8e-72 | 65.32 | Show/hide |
Query: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIPSLVGSLRYLTCTRPDILYPVGIISRFMEEPTTTHCKMA
MF+EFKKEMTKEFEMTDIGLMSYYLGIEVKQ ++ IFI+QEGYAKE+LKKF MDD+N PSLVGSLRYLTCTRPDILY VG++SR+ME PTTTH K A
Subjt: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIPSLVGSLRYLTCTRPDILYPVGIISRFMEEPTTTHCKMA
Query: KMILRYIKGTIGV------------------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQA
K ILRYIKGT+ + P +IFVDNKSAIALAKN VFH R+KHIDT++HYIR+CV+ K+V+L+Y+K+ DQ
Subjt: KMILRYIKGTIGV------------------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQA
Query: ADIFTKPLKLETFIRMRSLLGV
ADIFTKPLK E FI+MRSLLGV
Subjt: ADIFTKPLKLETFIRMRSLLGV
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| Q9SFE1 T26F17.17 | 4.3e-65 | 49.33 | Show/hide |
Query: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDI
MF+EFKKEMTKEFEMTDIGLMSYYLGIEVKQ ++ IFI+QEGYAKE+LKKF MDD+NPV P SLVGSLRYLTCTRPDI
Subjt: MFDEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDI
Query: LYPVGIISRFMEEPTTTHCKMAKMILRYIKGTIGV-----------------------------------------------------------------
LY VG++SR+ME PTTTH K AK ILRYIKGT+
Subjt: LYPVGIISRFMEEPTTTHCKMAKMILRYIKGTIGV-----------------------------------------------------------------
Query: -------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
+ P +IFVDNKSAIALAKN VFH R+KHIDT++HYIR+CV+ K+V+L+Y+K+ DQ ADIFTKPLK E FI+MRSLLGV
Subjt: -------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 7.6e-27 | 26.42 | Show/hide |
Query: DEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP---------------------SLVGSLRY-LTCTRPDILY
+ FK+ + ++F MTD+ + +++GI ++ ED+I++SQ Y K++L KFNM++ N V P SL+G L Y + CTRPD+
Subjt: DEFKKEMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP---------------------SLVGSLRY-LTCTRPDILY
Query: PVGIISRFMEEPTTTHCKMAKMILRYIKGTIGV-------------------------------------------------------------------
V I+SR+ + + + K +LRY+KGTI +
Subjt: PVGIISRFMEEPTTTHCKMAKMILRYIKGTIGV-------------------------------------------------------------------
Query: --------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
L+ P++I+ DN+ I++A N H R KHID ++H+ R+ V N + L+YI +++Q ADIFTKPL F+ +R LG+
Subjt: --------------------LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.3e-22 | 24.83 | Show/hide |
Query: EFKKEMTKEFEMTDIGLMSYYLGIEV--KQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------------SLVGSLRY-LT
+ K +++K F+M D+G LG+++ +++ ++++SQE Y + +L++FNM +A PV P S VGSL Y +
Subjt: EFKKEMTKEFEMTDIGLMSYYLGIEV--KQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------------SLVGSLRY-LT
Query: CTRPDILYPVGIISRFMEEPTTTHCKMAKMILRYIKGTIG----------VLQGPME-------------------------------------------
CTRPDI + VG++SRF+E P H + K ILRY++GT G +L+G +
Subjt: CTRPDILYPVGIISRFMEEPTTTHCKMAKMILRYIKGTIG----------VLQGPME-------------------------------------------
Query: -----------------------------IFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLL
++ D++SAI L+KN ++H R KHID ++H+IR+ V ++ +++ I + + AD+ TK + F + L+
Subjt: -----------------------------IFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLL
Query: GV
G+
Subjt: GV
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| P92519 Uncharacterized mitochondrial protein AtMg00810 | 1.6e-16 | 36.8 | Show/hide |
Query: EMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP---------------------SLVGSLRYLTCTRPDILYPVGIIS
+++ F M D+G + Y+LGI++K +F+SQ YA+++L M D P+ P S+VG+L+YLT TRPDI Y V I+
Subjt: EMTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP---------------------SLVGSLRYLTCTRPDILYPVGIIS
Query: RFMEEPTTTHCKMAKMILRYIKGTI
+ M EPT + K +LRY+KGTI
Subjt: RFMEEPTTTHCKMAKMILRYIKGTI
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 3.4e-19 | 26.46 | Show/hide |
Query: MTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDILYPVGIIS
+++ F + D + Y+LGIE K+ + +SQ Y ++L + NM A PV P +VGSL+YL TRPDI Y V +S
Subjt: MTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDILYPVGIIS
Query: RFMEEPTTTHCKMAKMILRYIKGT----------------------------------------------------------------------------
+FM PT H + K ILRY+ GT
Subjt: RFMEEPTTTHCKMAKMILRYIKGT----------------------------------------------------------------------------
Query: -------IGV-LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGVT
+G+ L P I+ DN A L N VFH R KHI +H+IR+ V + + + ++ + DQ AD TKPL F S +GVT
Subjt: -------IGV-LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGVT
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 7.2e-17 | 24.48 | Show/hide |
Query: MTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDILYPVGIIS
+++ F + + + Y+LGIE K+ + +SQ Y ++L + NM A PV P +VGSL+YL TRPD+ Y V +S
Subjt: MTKEFEMTDIGLMSYYLGIEVKQSEDEIFISQEGYAKEMLKKFNMDDANPVGIP----------------------SLVGSLRYLTCTRPDILYPVGIIS
Query: RFMEEPTTTHCKMAKMILRYIKGT----------------------------------------------------------------------------
++M PT H K +LRY+ GT
Subjt: RFMEEPTTTHCKMAKMILRYIKGT----------------------------------------------------------------------------
Query: -------IGV-LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
+G+ L P I+ DN A L N VFH R KHI +H+IR+ V + + + ++ + DQ AD TKPL F +GV
Subjt: -------IGV-LQGPMEIFVDNKSAIALAKNLVFHGRNKHIDTQFHYIRDCVANKEVELKYIKSQDQAADIFTKPLKLETFIRMRSLLGV
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