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Lag0029104 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0029104
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionextensin 3
Genome locationchr8:35413843..35414280
RNA-Seq ExpressionLag0029104
SyntenyLag0029104
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607626.1 hypothetical protein SDJN03_00968, partial [Cucurbita argyrosperma subsp. sororia]3.2e-0540.65Show/hide
Query:  AIMASFVLSLLIAILLCLNLPSKSTAQYTATVHYPSPSPPARPIARFHSFISPPPKKHRQLQSPPPPMARPMAPYFPFKFTSQPNSKQYIVKLLRG---P
        A  + F+ SLLIA L+ L+L SK TAQ           PPARPIA                     PM +P+APY    F S  N+KQY V+  R    P
Subjt:  AIMASFVLSLLIAILLCLNLPSKSTAQYTATVHYPSPSPPARPIARFHSFISPPPKKHRQLQSPPPPMARPMAPYFPFKFTSQPNSKQYIVKLLRG---P

Query:  VPSSGPSSQWPNEFMHTSTPPPF
          S GP  QWPNE +  S PPPF
Subjt:  VPSSGPSSQWPNEFMHTSTPPPF
TrEMBL top hitse value%identityAlignment
A0A6J1CIP8 leucine-rich repeat extensin-like protein 36.4e-0436.59Show/hide
Query:  SLLIAILLCLNLPSKSTAQYTATVHYPSPSPPARPIARFHSFISPPPKKHRQLQSPPPPMARPMAPYFPFKFTSQPNSKQYIVKLLRGPVPSSGPSSQWP
        ++LIA  +CLN+ +K +AQ+     +PS  PPA P     S    PPKKH+QLQ   PP+A P+ PYFPF +   P+ K Y       P P +      P
Subjt:  SLLIAILLCLNLPSKSTAQYTATVHYPSPSPPARPIARFHSFISPPPKKHRQLQSPPPPMARPMAPYFPFKFTSQPNSKQYIVKLLRGPVPSSGPSSQWP

Query:  ------------NEFMHTSTPPP
                      + HTS PPP
Subjt:  ------------NEFMHTSTPPP
SwissProt top hitse value%identityAlignment
P06599 Extensin1.2e-0434.59Show/hide
Query:  MASFVLSLLIAILLCLNLPSKSTAQYTATVHYP---SPSPPARPIARFHSFISPPPKKHR--------QLQSPPPPMARPMAPYF-----PFKFTSQPNS
        M+S ++SLL+ +L+ LNL S++TA+YT +   P   SP PP       + + SPPP KH         + +SPPPPM  P  PY      P K +  P +
Subjt:  MASFVLSLLIAILLCLNLPSKSTAQYTATVHYP---SPSPPARPIARFHSFISPPPKKHR--------QLQSPPPPMARPMAPYF-----PFKFTSQPNS

Query:  KQYIVKLLRGPVPSSGPSSQWPNEFMHTSTPPP
          Y  K    P P   P+    + + + S PPP
Subjt:  KQYIVKLLRGPVPSSGPSSQWPNEFMHTSTPPP
Q9FS16 Extensin-38.1e-0431.25Show/hide
Query:  LSLLIAILLCLNLPSKSTAQYTATVHYPSPSPPAR----------PIARFHSFISPPPKKHRQLQSPPPPMARPMAPYFPFKFTSQPNSKQYIVKLLRGP
        ++ L+A LL L +     +Q TA   Y SP PP +          P   +HS   PPPKKH + +SPPPP+     P  P   +  P  K Y+ K    P
Subjt:  LSLLIAILLCLNLPSKSTAQYTATVHYPSPSPPAR----------PIARFHSFISPPPKKHRQLQSPPPPMARPMAPYFPFKFTSQPNSKQYIVKLLRGP

Query:  VPSSGPSSQW------PNEFMHTSTPPP
        V    P   +         +++ S PPP
Subjt:  VPSSGPSSQW------PNEFMHTSTPPP
Arabidopsis top hitse value%identityAlignment
AT1G21310.1 extensin 35.7e-0531.25Show/hide
Query:  LSLLIAILLCLNLPSKSTAQYTATVHYPSPSPPAR----------PIARFHSFISPPPKKHRQLQSPPPPMARPMAPYFPFKFTSQPNSKQYIVKLLRGP
        ++ L+A LL L +     +Q TA   Y SP PP +          P   +HS   PPPKKH + +SPPPP+     P  P   +  P  K Y+ K    P
Subjt:  LSLLIAILLCLNLPSKSTAQYTATVHYPSPSPPAR----------PIARFHSFISPPPKKHRQLQSPPPPMARPMAPYFPFKFTSQPNSKQYIVKLLRGP

Query:  VPSSGPSSQW------PNEFMHTSTPPP
        V    P   +         +++ S PPP
Subjt:  VPSSGPSSQW------PNEFMHTSTPPP

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAATCTTCACAACATAACAACTGCAAGAAGGCCACTAAGTTCTAAACCAGTTCGAAAAATACATTTTGTTGCAATAATGGCTTCCTTTGTTTTGTCCCTTCTCAT
TGCAATATTGCTCTGTTTGAATCTGCCATCAAAATCTACAGCACAATACACAGCAACTGTTCATTATCCATCTCCATCTCCACCAGCTCGCCCAATTGCTCGTTTCCATT
CCTTCATATCGCCGCCACCAAAGAAGCACAGGCAATTACAGTCGCCTCCACCTCCCATGGCCAGGCCCATGGCTCCTTATTTCCCTTTCAAATTTACATCACAACCGAAC
AGTAAGCAATACATTGTCAAGTTACTGCGCGGGCCGGTCCCGTCGTCGGGGCCATCGAGCCAATGGCCGAATGAGTTCATGCATACATCGACTCCACCTCCTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAAATCTTCACAACATAACAACTGCAAGAAGGCCACTAAGTTCTAAACCAGTTCGAAAAATACATTTTGTTGCAATAATGGCTTCCTTTGTTTTGTCCCTTCTCAT
TGCAATATTGCTCTGTTTGAATCTGCCATCAAAATCTACAGCACAATACACAGCAACTGTTCATTATCCATCTCCATCTCCACCAGCTCGCCCAATTGCTCGTTTCCATT
CCTTCATATCGCCGCCACCAAAGAAGCACAGGCAATTACAGTCGCCTCCACCTCCCATGGCCAGGCCCATGGCTCCTTATTTCCCTTTCAAATTTACATCACAACCGAAC
AGTAAGCAATACATTGTCAAGTTACTGCGCGGGCCGGTCCCGTCGTCGGGGCCATCGAGCCAATGGCCGAATGAGTTCATGCATACATCGACTCCACCTCCTTTCTAG
Protein sequenceShow/hide protein sequence
MRNLHNITTARRPLSSKPVRKIHFVAIMASFVLSLLIAILLCLNLPSKSTAQYTATVHYPSPSPPARPIARFHSFISPPPKKHRQLQSPPPPMARPMAPYFPFKFTSQPN
SKQYIVKLLRGPVPSSGPSSQWPNEFMHTSTPPPF