; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0029241 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0029241
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNA polymerase II transcription factor B subunit 4
Genome locationchr8:36834864..36839496
RNA-Seq ExpressionLag0029241
SyntenyLag0029241
Gene Ontology termsGO:0006289 - nucleotide-excision repair (biological process)
GO:0070816 - phosphorylation of RNA polymerase II C-terminal domain (biological process)
GO:0000439 - transcription factor TFIIH core complex (cellular component)
GO:0005675 - transcription factor TFIIH holo complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR004600 - TFIIH subunit Tfb4/GTF2H3
IPR036465 - von Willebrand factor A-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047669.1 RNA polymerase II transcription factor B subunit 4 [Cucumis melo var. makuwa]5.7e-11497.24Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN G+EDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV
        +IGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP ILCLQGSPDGPEQYVAIMNAIFSAQRSMV IDSCYIGSHNSAFLQQASYITGGV
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV

Query:  YLKPQQMDGLFQYLSTV
        YLKPQQMDGLFQYL+TV
Subjt:  YLKPQQMDGLFQYLSTV

KAE8651699.1 hypothetical protein Csa_005902 [Cucumis sativus]6.7e-11597.7Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWSTS+LPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN G+EDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV
        +IGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV

Query:  YLKPQQMDGLFQYLSTV
        YLKPQQMDGLFQYLSTV
Subjt:  YLKPQQMDGLFQYLSTV

XP_004152842.1 general transcription and DNA repair factor IIH subunit TFB4 [Cucumis sativus]6.7e-11597.7Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWSTS+LPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN G+EDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV
        +IGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV

Query:  YLKPQQMDGLFQYLSTV
        YLKPQQMDGLFQYLSTV
Subjt:  YLKPQQMDGLFQYLSTV

XP_008441918.2 PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 4 [Cucumis melo]5.7e-11497.24Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN G+EDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV
        +IGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP ILCLQGSPDGPEQYVAIMNAIFSAQRSMV IDSCYIGSHNSAFLQQASYITGGV
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV

Query:  YLKPQQMDGLFQYLSTV
        YLKPQQMDGLFQYL+TV
Subjt:  YLKPQQMDGLFQYLSTV

XP_038886688.1 general transcription and DNA repair factor IIH subunit TFB4 [Benincasa hispida]3.7e-11396.31Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF
        MASAP KLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN G+EDGRMPALCTRLL NLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV
        +I DEQS+KEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV

Query:  YLKPQQMDGLFQYLSTV
        YLKPQQMDGLFQYLSTV
Subjt:  YLKPQQMDGLFQYLSTV

TrEMBL top hitse value%identityAlignment
A0A0A0LMM2 Uncharacterized protein3.2e-11597.7Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWSTS+LPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN G+EDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV
        +IGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV

Query:  YLKPQQMDGLFQYLSTV
        YLKPQQMDGLFQYLSTV
Subjt:  YLKPQQMDGLFQYLSTV

A0A1S3B4H7 LOW QUALITY PROTEIN: RNA polymerase II transcription factor B subunit 42.7e-11497.24Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN G+EDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV
        +IGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP ILCLQGSPDGPEQYVAIMNAIFSAQRSMV IDSCYIGSHNSAFLQQASYITGGV
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV

Query:  YLKPQQMDGLFQYLSTV
        YLKPQQMDGLFQYL+TV
Subjt:  YLKPQQMDGLFQYLSTV

A0A5A7U2L2 RNA polymerase II transcription factor B subunit 42.7e-11497.24Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSN G+EDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV
        +IGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQP ILCLQGSPDGPEQYVAIMNAIFSAQRSMV IDSCYIGSHNSAFLQQASYITGGV
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV

Query:  YLKPQQMDGLFQYLSTV
        YLKPQQMDGLFQYL+TV
Subjt:  YLKPQQMDGLFQYLSTV

A0A6J1CM09 RNA polymerase II transcription factor B subunit 4 isoform X13.3e-11294.93Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF
        MAS PSKLYADDVSLL+VLLDTNPFFWSTSSLPFSKFLSHVLAFLNSIL LNQLNEVVVIGTGYASCKYLYNSSS+SNRG+EDGRMPALCTRLLKNLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV
        +I DEQS+KEDP+GGTMSSLLSGSLSMALCYIQKVFRSGSLHP P ILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV

Query:  YLKPQQMDGLFQYLSTV
        YLKPQQMDGLFQYLSTV
Subjt:  YLKPQQMDGLFQYLSTV

A0A6J1FJQ6 RNA polymerase II transcription factor B subunit 46.7e-11395.85Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF
        MASAPSKLYADDVSLLVVLLDTNPFFWST SLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNR +EDGRMPALCTRLL NLEEF
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEF

Query:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV
        MIGDEQSI+EDP+GGTMSSLLSGSLSMALCYIQKVFRSGSLHP P ILCLQGSPDGPEQYVAIMN+IFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV
Subjt:  MIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGV

Query:  YLKPQQMDGLFQYLSTV
        YLKPQQMDGLFQYLSTV
Subjt:  YLKPQQMDGLFQYLSTV

SwissProt top hitse value%identityAlignment
Q05B56 General transcription factor IIH subunit 31.6e-2333.48Show/hide
Query:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLY----------------NSSSYSNRGIEDGRMPAL
        D+++LLV+++DTNP +W   +L  S+F     +  V+   NS L +N+ N++ VI +     ++LY                 SS ++  G +DG+   L
Subjt:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLY----------------NSSSYSNRGIEDGRMPAL

Query:  CTRLLKNLEEFMIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFR--SGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNS
                EE     +   K D +G    +LL+GSL+ ALCYI ++ +    +   +  IL ++ + D   QY+  MN IF+AQ+  + ID+C + S +S
Subjt:  CTRLLKNLEEFMIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFR--SGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNS

Query:  AFLQQASYITGGVYLKPQQMDGLFQYL
          LQQA  ITGG+YLK  QM  L QYL
Subjt:  AFLQQASYITGGVYLKPQQMDGLFQYL

Q13889 General transcription factor IIH subunit 31.3e-2332.89Show/hide
Query:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLY---------------NSSSYSNRGIEDGRMPALC
        D+++LLV+++D NP +W   +L  S+F     +  V+   NS L +N+ N++ VI +     ++LY               N   ++  G +DG+     
Subjt:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLY---------------NSSSYSNRGIEDGRMPALC

Query:  TRLLKNLEEFMIGDEQSI--KEDPKGGTMSSLLSGSLSMALCYIQKVFR--SGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHN
          LL +  E ++ + + +  K D KG    +LL+GSL+ ALCYI ++ +    +   +  IL ++ + D   QY+  MN IF+AQ+  + ID+C + S +
Subjt:  TRLLKNLEEFMIGDEQSI--KEDPKGGTMSSLLSGSLSMALCYIQKVFR--SGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHN

Query:  SAFLQQASYITGGVYLKPQQMDGLFQYL
        S  LQQA  ITGG+YLK  QM  L QYL
Subjt:  SAFLQQASYITGGVYLKPQQMDGLFQYL

Q86IB5 General transcription factor IIH subunit 31.8e-2532.87Show/hide
Query:  FSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRM----------------PALCTRLLKNLEEFMIGDEQSIKEDPKGGTM
        F+KFL H + F+N+ L+LNQ N++ +I +      +++  S+      E   +                  +  ++L  L++     +  IK D +   +
Subjt:  FSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRM----------------PALCTRLLKNLEEFMIGDEQSIKEDPKGGTM

Query:  SSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV
        SS  S S+S+ALCYI ++ R  +   +P IL    SPD   QY+++MN IFS+Q+  +P+DSC +   +S FLQQAS++T G+YLKPQ+ + L QYL T 
Subjt:  SSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTV

Query:  LPLICIPGPSYSFQSL
          L  +   S ++ +L
Subjt:  LPLICIPGPSYSFQSL

Q8LF41 General transcription and DNA repair factor IIH subunit TFB47.2e-8069.68Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGR---MPALCTRLLKNL
        M +  SK Y+DDVSLLV+LLDTNP FWST+S+ FS+FLSHVLAFLN++L LNQLN+VVVI TGY+SC Y+Y+SS  SN G  +     MPA+   LLK L
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGR---MPALCTRLLKNL

Query:  EEFMIGDEQSIKEDPKGGTM-SSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYI
        EEF+  DE+  KE+     + S LLSGSLSMALCYIQ+VFRSG LHPQP ILCLQGSPDGPEQYVA+MN+IFSAQR MVPIDSCYIG  NSAFLQQASYI
Subjt:  EEFMIGDEQSIKEDPKGGTM-SSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYI

Query:  TGGVYLKPQQMDGLFQYLSTV
        TGGV+  P+Q+DGLFQYL+T+
Subjt:  TGGVYLKPQQMDGLFQYLSTV

Q8VD76 General transcription factor IIH subunit 34.8e-2333.48Show/hide
Query:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSS----------------YSNRGIEDGRMPAL
        D+++LLV+++DTNP +W   +L  S+F     +  V+   NS L +N+ N++ VI +     + LY   +                 +  G +DG+   L
Subjt:  DDVSLLVVLLDTNPFFWSTSSLPFSKF-----LSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSS----------------YSNRGIEDGRMPAL

Query:  CTRLLKNLEEFMIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRS--GSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNS
                EE     +   K D KG    +LL+GSL+ ALCYI +V ++   +   +  IL ++ + D   QY+  MN IF+AQ+  + ID+C + S +S
Subjt:  CTRLLKNLEEFMIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFRS--GSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNS

Query:  AFLQQASYITGGVYLKPQQMDGLFQYL
          LQQA  ITGG+YLK  QM  L QYL
Subjt:  AFLQQASYITGGVYLKPQQMDGLFQYL

Arabidopsis top hitse value%identityAlignment
AT1G18340.1 basal transcription factor complex subunit-related5.1e-8169.68Show/hide
Query:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGR---MPALCTRLLKNL
        M +  SK Y+DDVSLLV+LLDTNP FWST+S+ FS+FLSHVLAFLN++L LNQLN+VVVI TGY+SC Y+Y+SS  SN G  +     MPA+   LLK L
Subjt:  MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGR---MPALCTRLLKNL

Query:  EEFMIGDEQSIKEDPKGGTM-SSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYI
        EEF+  DE+  KE+     + S LLSGSLSMALCYIQ+VFRSG LHPQP ILCLQGSPDGPEQYVA+MN+IFSAQR MVPIDSCYIG  NSAFLQQASYI
Subjt:  EEFMIGDEQSIKEDPKGGTM-SSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYI

Query:  TGGVYLKPQQMDGLFQYLSTV
        TGGV+  P+Q+DGLFQYL+T+
Subjt:  TGGVYLKPQQMDGLFQYLSTV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCTGCTCCTTCGAAGCTCTATGCAGATGATGTTAGCCTTTTAGTGGTTTTACTAGATACGAATCCATTTTTCTGGAGCACATCTTCTCTCCCATTCTCCAAGTT
TCTCTCTCATGTACTTGCTTTTCTGAACTCCATTTTAGTTTTGAATCAACTTAATGAGGTTGTGGTCATTGGTACCGGATACGCCTCATGCAAGTACCTGTATAATTCGT
CTTCGTACTCTAATCGTGGGATTGAAGATGGTAGAATGCCTGCTCTTTGCACTCGTTTATTGAAGAATTTGGAGGAATTCATGATTGGGGATGAGCAGTCCATTAAGGAA
GACCCCAAAGGAGGAACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCTCTGTGTTATATCCAGAAAGTTTTTCGCTCTGGATCCCTTCATCCCCAACCTTGGAT
CCTTTGCTTGCAGGGATCCCCAGATGGACCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAACGTTCAATGGTTCCTATAGATTCATGTTACATTGGTT
CACACAATTCTGCATTTCTTCAGCAGGCTTCTTACATAACTGGCGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGTTGTTTCAATATCTCTCTACCGTTTTGCCACTG
ATTTGCATTCCCGGACCTTCTTACAGCTTCCAAAGTCTGTTGGTGTGGATTTTCGTGCATCGTGCTTTTGCCACAAAAAAACAATTGATATGGGCTATGTCTGTTCTGTT
TGCTTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGAGATGCCTCAAGGGAAATGGGTGCTGGAAGAGGGTCGGTGTTTGCCCTGACATTGTACGACA
CAGATCATGAGTTCGAACATTTTGAGCTAGCATTCGAACTCAGTTGGATGTGCCAATATGGAATCATGGCAAACAAGGACATGCACCCATATTCATCGTTACCAGTCCCA
CAAGAATCCGGTAACAAAATTCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCTGCTCCTTCGAAGCTCTATGCAGATGATGTTAGCCTTTTAGTGGTTTTACTAGATACGAATCCATTTTTCTGGAGCACATCTTCTCTCCCATTCTCCAAGTT
TCTCTCTCATGTACTTGCTTTTCTGAACTCCATTTTAGTTTTGAATCAACTTAATGAGGTTGTGGTCATTGGTACCGGATACGCCTCATGCAAGTACCTGTATAATTCGT
CTTCGTACTCTAATCGTGGGATTGAAGATGGTAGAATGCCTGCTCTTTGCACTCGTTTATTGAAGAATTTGGAGGAATTCATGATTGGGGATGAGCAGTCCATTAAGGAA
GACCCCAAAGGAGGAACCATGTCTTCACTTCTTTCTGGATCGCTCTCCATGGCTCTGTGTTATATCCAGAAAGTTTTTCGCTCTGGATCCCTTCATCCCCAACCTTGGAT
CCTTTGCTTGCAGGGATCCCCAGATGGACCTGAACAATATGTTGCAATCATGAATGCCATCTTTTCTGCTCAACGTTCAATGGTTCCTATAGATTCATGTTACATTGGTT
CACACAATTCTGCATTTCTTCAGCAGGCTTCTTACATAACTGGCGGAGTTTATCTGAAGCCTCAGCAAATGGATGGGTTGTTTCAATATCTCTCTACCGTTTTGCCACTG
ATTTGCATTCCCGGACCTTCTTACAGCTTCCAAAGTCTGTTGGTGTGGATTTTCGTGCATCGTGCTTTTGCCACAAAAAAACAATTGATATGGGCTATGTCTGTTCTGTT
TGCTTATCTATATTCTGCAAGCATCACAAGAAATGTTCTACCTGTGGGAGATGCCTCAAGGGAAATGGGTGCTGGAAGAGGGTCGGTGTTTGCCCTGACATTGTACGACA
CAGATCATGAGTTCGAACATTTTGAGCTAGCATTCGAACTCAGTTGGATGTGCCAATATGGAATCATGGCAAACAAGGACATGCACCCATATTCATCGTTACCAGTCCCA
CAAGAATCCGGTAACAAAATTCTATGA
Protein sequenceShow/hide protein sequence
MASAPSKLYADDVSLLVVLLDTNPFFWSTSSLPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNRGIEDGRMPALCTRLLKNLEEFMIGDEQSIKE
DPKGGTMSSLLSGSLSMALCYIQKVFRSGSLHPQPWILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVLPL
ICIPGPSYSFQSLLVWIFVHRAFATKKQLIWAMSVLFAYLYSASITRNVLPVGDASREMGAGRGSVFALTLYDTDHEFEHFELAFELSWMCQYGIMANKDMHPYSSLPVP
QESGNKIL