CuGenDBv2

Gene ID	Lag0029299
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Transposon Ty3-I Gag-Pol polyprotein
Genome location	chr8:37375707..37381983
RNA-Seq Expression	Lag0029299
Synteny	Lag0029299
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0008233 - peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0051909.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

3.4e-27

81.71

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSL
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLANAQRE  NFE KFLYNVSSASQEE+GVKMAREKLC+ EDGT ++KS+
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSL

KAA0067206.1 hypothetical protein E6C27_scaffold418G00080 [Cucumis melo var. makuwa]

2.6e-27

82.93

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSL
        +DSINN LHVPEGPIT+ KAKKIQEAFTLHVQKL NAQRE  NFEPKFLYNVSSASQEE+ +KMA EKLCSLEDGT D+KS+
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSL

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]

6.8e-28

82.93

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSL
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLANAQRE  NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT ++KS+
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSL

TYK08102.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

4.4e-27

83.75

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKK
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLANAQRE  NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT ++K
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKK

TYK11649.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]

2.0e-27

78.82

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSLMFN
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLANAQRE  NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT ++K  +++
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSLMFN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UEI2 Transposon Ty3-I Gag-Pol polyprotein

1.6e-27

81.71

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSL
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLANAQRE  NFE KFLYNVSSASQEE+GVKMAREKLC+ EDGT ++KS+
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSL

A0A5A7VL78 RT_RNaseH_2 domain-containing protein

1.3e-27

82.93

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSL
        +DSINN LHVPEGPIT+ KAKKIQEAFTLHVQKL NAQRE  NFEPKFLYNVSSASQEE+ +KMA EKLCSLEDGT D+KS+
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSL

A0A5D3BWE8 F15O4.13

3.3e-28

82.93

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSL
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLANAQRE  NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT ++KS+
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSL

A0A5D3C9X5 Transposon Ty3-I Gag-Pol polyprotein

2.1e-27

83.75

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKK
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLANAQRE  NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT ++K
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKK

A0A5D3CN32 Transposon Ty3-I Gag-Pol polyprotein

9.6e-28

78.82

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Query:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSLMFN
        +DS+NN LHVPEGPIT+ KAKKIQEAFTLHVQKLANAQRE  NFE KFLYNVSSASQEE+GVKMAREKLC+LEDGT ++K  +++
Subjt:  MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSLMFN

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGATTCAATCAATAATCCATTACATGTACCTGAAGGACCAATCACAAGGAGCAAGGCAAAGAAGATACAAGAGGCTTTCACACTGCATGTTCAAAAGCTAGCAAATGC
ACAACGAGAGGCCGGGAATTTTGAACCCAAATTTTTGTATAATGTTAGTTCAGCAAGTCAAGAAGAGAATGGAGTCAAGATGGCACGGGAAAAGTTGTGTAGTTTGGAAG
ATGGCACGGAGGACAAAAAAAGTTTGATGTTCAATCGATTCATTGGATTAGTTTTTGATCAATCTAATTCTGGAGTGATTTTGGACCACACAGATGGACAAGGAGCTGAC
GAGGACAATCGGGCAGAGGTAGGATCAAGAGACCGACCCAGAGGAAGACCGGACCAAAGGGTCGGGCCAAAATGGCCCGACCATTCGGCCCGTTTGCACGGGCCGAGCCC
GGTGACCTCTTTTCGGTCCCTAATGTCCCGAATCGCCCCGGTTTCGCCTGGTTCGCCCCGAAACGCCACCGAATTCCTAAAAAACCCTAGGAGGACAAACAGGCATCGGA
GGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTTTTTGCTGGTCTTGCAGTTGAGGGGGGAAGACGTGGCCTGCAAGACAGTAAACCTGCACACCGGTGTGGTGCTC
GCCACACCGGCTCCGATGCTTAAGTCAGAAAGCAGAACGGAGGGGCGTGGAAAAGTAAGAGCAAGAGCAGAAAAGAGAAAATCGATAGTAGAGTTTAGGGATGGAATTCG
GAATCCCCTCTTCAGTGGCGAAGAGGGATATAAATACCTGTTCATCCTCCTAGCCTTTTTAGGGTTTCGGAGGCGTTTAAGGTCAAACCAGGCGAAACCGGGGCATCCAG
AGGCGGTGGGGACCAGACGGGACCAAACGAGCTCGGCCCGCACGAGCGGGCCGAGGGTCGGCCTCGGCCATGGCCGAGGCCGACCATGTGCTCGGCTCGGCTATGGGCCG
AGGCCGAGCATGGGGTCGGGTCAAAAACCCGACCCCTTCGGCCTTGGCCCGTCCCGCTTACCGGCTCGCCTCCTTGGCCCGATTTCCAGCCCGATTTCTCCCCGATTGTC
CTCGTCAGCTCCTCGTACATCGGGGTGGTCCAAAATTGCCTATAACATTAAGCCCCCACTCATGAATTGGGATTCGGGGGGGCGTTGCCCCGAACCCCACCGGGCGCTTC
GCCCTGGACCCCGACTCGCTGACCGGCGAGACCCCCGTACTGGGTCATTCGGAGTGCTTCATTTCAGGAGAATACCTTTAAAGTTTGTGCTCGGCCTCGGCAAGAGGTGC
TCGGCCTTGGCAAGAGGTGCTCGGTCCTGGCTTCTGCAGGGTGAGCTTGACTTAAATGAAGTGTATGGACTCATGTCAGGTGAGTCCAGGCTCGCCCAGTGTAAGGATGC
TCAAGCCAGAGGAGGTGAGGTAGACTCGTTGGTCCAGGCTCACATGGTCTCACTCTGGATGAGGCGAGGTAGACTTCGACAGTCCAGGCTCGCCCGGTGTAAAGATGCTC
AGTCCAGAGGAGGTGAGGTAGACTCGTTGGTCCCGACTCACATGGTCTCACTCTGGATGAGGCGAGGTAGACTTCGACAGTCCAGGCTCGCCCGGTGTAAAGATGCTCAA
GCCAGAGGATGTGAGGTAGACTCGTCGGTCCAGGCTCACATGGTCTCACTCTGGATGAGGCGAGGTAGACTTCGGCAGTCCAGGCTCGCCCGGTGTAAAGATGCTCAAGC
CAGAGGATGTGAGGTAGACTCGTCGGTCCAGGCTCACATGGTCTCACTCTGGATGAGGCGAGGTAGACTCGGTAGTCCAGGCTCGCATGTCTTGATGCTTGAGTCGGTTG
CCTTGTGCACACTCCTGAATACTAAACTTTAA

mRNA sequence

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Protein sequence

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MDSINNPLHVPEGPITRSKAKKIQEAFTLHVQKLANAQREAGNFEPKFLYNVSSASQEENGVKMAREKLCSLEDGTEDKKSLMFNRFIGLVFDQSNSGVILDHTDGQGAD
EDNRAEVGSRDRPRGRPDQRVGPKWPDHSARLHGPSPVTSFRSLMSRIAPVSPGSPRNATEFLKNPRRTNRHRRRCGLHHAGVQRFLLVLQLRGEDVACKTVNLHTGVVL
ATPAPMLKSESRTEGRGKVRARAEKRKSIVEFRDGIRNPLFSGEEGYKYLFILLAFLGFRRRLRSNQAKPGHPEAVGTRRDQTSSARTSGPRVGLGHGRGRPCARLGYGP
RPSMGSGQKPDPFGLGPSRLPARLLGPISSPISPRLSSSAPRTSGWSKIAYNIKPPLMNWDSGGRCPEPHRALRPGPRLADRRDPRTGSFGVLHFRRIPLKFVLGLGKRC
SALARGARSWLLQGELDLNEVYGLMSGESRLAQCKDAQARGGEVDSLVQAHMVSLWMRRGRLRQSRLARCKDAQSRGGEVDSLVPTHMVSLWMRRGRLRQSRLARCKDAQ
ARGCEVDSSVQAHMVSLWMRRGRLRQSRLARCKDAQARGCEVDSSVQAHMVSLWMRRGRLGSPGSHVLMLESVALCTLLNTKL

Lag0029299 (gene) of Sponge gourd (AG-4) v1 genome