; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0029325 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0029325
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr8:37738072..37738844
RNA-Seq ExpressionLag0029325
SyntenyLag0029325
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KMS97072.1 hypothetical protein BVRB_7g179330 [Beta vulgaris subsp. vulgaris]1.3e-1232.35Show/hide
Query:  RTGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFSPKR
        R G+G++ RD +G +L A S  +S D+    AE   +    + AI+ G+ NV+L+SD    IN I   L+ R ++  +++D+      F  + FSF  + 
Subjt:  RTGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFSPKR

Query:  VNYAADSIAKRALREECNEIWIHEFPEWIVNLVIHD
         N  A  +AK A    C+E+W+   P WI +L++ D
Subjt:  VNYAADSIAKRALREECNEIWIHEFPEWIVNLVIHD

XP_021859888.1 uncharacterized protein LOC110798996 [Spinacia oleracea]3.9e-1230.37Show/hide
Query:  GIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFSPKRVN
        G+G++ RD  G +L ++ +    + DP  AE + +  G K A  +G+ +++++SDC + + L  G+  VR    +I+DD+ A    F   +F F+ +  N
Subjt:  GIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFSPKRVN

Query:  YAADSIAKRALREECNEIWIHEFPEWIVNLVIHDR
          A SIAK +L  E   +W+ + P  ++ LV+ D+
Subjt:  YAADSIAKRALREECNEIWIHEFPEWIVNLVIHDR

XP_023893303.1 uncharacterized protein LOC112005292 [Quercus suber]4.6e-1330.88Show/hide
Query:  RTGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFSPKR
        R GIGV+ RDS G++LG+ S  +S  + P   E   ++  M+ A+ LG+ +VIL++D L  +  +  + E  + +G+++D++R   +LFNEL +S   + 
Subjt:  RTGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFSPKR

Query:  VNYAADSIAKRALREECNEIWIHEFPEWIVNLVIHD
         N  A  +A  A+      +W+ + P  +  +V+ D
Subjt:  VNYAADSIAKRALREECNEIWIHEFPEWIVNLVIHD

XP_023919081.1 uncharacterized protein LOC112030645 [Quercus suber]3.0e-1229.1Show/hide
Query:  GIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFSPKRVN
        G+GV+ R+S GL+LG+ S  V L + P   E   ++  ++ A  LG+   I+++D L  +  ++ + E  + +G+I+D++R K + FNEL +S   +  N
Subjt:  GIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFSPKRVN

Query:  YAADSIAKRALREECNEIWIHEFPEWIVNLVIHD
          A  +A+ A+      +W+ + P  +  +V+ D
Subjt:  YAADSIAKRALREECNEIWIHEFPEWIVNLVIHD

XP_038704726.1 uncharacterized protein LOC120000672 [Tripterygium wilfordii]7.9e-1331.16Show/hide
Query:  GIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFSPKRVN
        G+G + RD +G +  A S  ++  F P + +   L KG +LAI +G  N+I++SD    +N I+ E       G I+DD+R+  S    +   ++ +  N
Subjt:  GIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFSPKRVN

Query:  YAADSIAKRALREECNEIWIHEFPEWIVNLVIHDRLSV
          A  +A+ ++  +C   WI E P++I++ VIHD + V
Subjt:  YAADSIAKRALREECNEIWIHEFPEWIVNLVIHDRLSV

TrEMBL top hitse value%identityAlignment
A0A0J8BAU9 Uncharacterized protein6.5e-1332.35Show/hide
Query:  RTGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFSPKR
        R G+G++ RD +G +L A S  +S D+    AE   +    + AI+ G+ NV+L+SD    IN I   L+ R ++  +++D+      F  + FSF  + 
Subjt:  RTGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFSPKR

Query:  VNYAADSIAKRALREECNEIWIHEFPEWIVNLVIHD
         N  A  +AK A    C+E+W+   P WI +L++ D
Subjt:  VNYAADSIAKRALREECNEIWIHEFPEWIVNLVIHD

A0A2P6R2K8 Putative ribonuclease H-like domain-containing protein4.2e-1228.06Show/hide
Query:  GLPRTGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFS
        G    G+G + RD++G  +GA    +S +  P  AEL  +  G++ A+  G+  ++++ DCL  +NL+  E E  +E G++  +++     F      F 
Subjt:  GLPRTGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFS

Query:  PKRVNYAADSIAKRALREECNEIWIHEFPEWIVNLVIHD
        P+ VN AA  +A+   R E    W+   P W++ ++  D
Subjt:  PKRVNYAADSIAKRALREECNEIWIHEFPEWIVNLVIHD

A0A6J1DX30 uncharacterized protein LOC1110248749.4e-1233.82Show/hide
Query:  TGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFSPKRV
        T  G I RDSS  L+ A+S  V     P LAE+R + +G+K A +  + ++ ++SD L AI LI+ E+  R +    + +++A T  F  + FS S ++ 
Subjt:  TGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFSPKRV

Query:  NYAADSIAKRALRE-ECNEIWIHEFPEWIVNLVIHD
        N AA  +AK  +        W+  FP W+++LV  D
Subjt:  NYAADSIAKRALRE-ECNEIWIHEFPEWIVNLVIHD

A0A7J6FK63 RNase H domain-containing protein2.7e-1131.16Show/hide
Query:  STVASRIDGLPRTGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLF
        +T AS IDG P  G+GVI RD  G L+ A++ ++       +AE   +   +KLA +    N+ + SD    I  +KG+  +  + GIII+D    +  F
Subjt:  STVASRIDGLPRTGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLF

Query:  NELIFSFSPKRVNYAADSIAKRALREECNEIWIHEFPE
        N L F F P++ N  A  +A  +     +++W    P+
Subjt:  NELIFSFSPKRVNYAADSIAKRALREECNEIWIHEFPE

A0A7J6GMP0 RNase H domain-containing protein2.7e-1131.16Show/hide
Query:  STVASRIDGLPRTGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLF
        +T AS IDG P  G+GVI RD  G L+ A++ ++       +AE   +   +KLA +    N+ + SD    I  +KG+  +  + GIII+D    +  F
Subjt:  STVASRIDGLPRTGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLF

Query:  NELIFSFSPKRVNYAADSIAKRALREECNEIWIHEFPE
        N L F F P++ N  A  +A  +     +++W    P+
Subjt:  NELIFSFSPKRVNYAADSIAKRALREECNEIWIHEFPE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G04420.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein4.4e-0627.82Show/hide
Query:  RTGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGII--IDDLRAKTSLFNELIFSFSP
        +T  G + RD  G   GA+ A      +   +EL+ L   M+   S GY  VI + D      L+  +   +   G    I +  + +  F E+IFS++P
Subjt:  RTGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGII--IDDLRAKTSLFNELIFSFSP

Query:  KRVNYAADSIAKRALREECNEIWIHEFPEWIVN
        +  N  AD +AK  L ++ + I+ +  P +I N
Subjt:  KRVNYAADSIAKRALREECNEIWIHEFPEWIVN

AT5G65005.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.4e-0423.7Show/hide
Query:  TGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFSPKRV
        +G+G I R+S G ++               AE  TL   ++ +   G+  VI + D      +I  +      L   +D +++    F  + FSF  +  
Subjt:  TGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNELIFSFSPKRV

Query:  NYAADSIAKRALREECNEIWIHEFPEWIVNLVIHD
        N  AD +AK+A++E       H  P ++   V +D
Subjt:  NYAADSIAKRALREECNEIWIHEFPEWIVNLVIHD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATTGTTGTTGGCGAAGTTCAACCGTAGCTTCTCGAATAGATGGTTTGCCTCGCACAGGAATTGGCGTTATATGTCGCGATTCTTCCGGATTATTGCTAGGAGCTTC
ATCTGCTTTTGTCAGCCTGGATTTTGACCCTCCTTTAGCCGAATTGCGGACTCTTTCAAAAGGCATGAAGTTGGCGATCTCCCTAGGTTACGGAAATGTGATTTTGGATT
CTGATTGTCTCCATGCGATTAATCTCATTAAGGGAGAATTGGAGGTGCGGAATGAACTGGGAATTATTATCGATGATCTTCGAGCAAAGACTTCCCTATTCAATGAGCTT
ATTTTTTCTTTTTCACCTAAAAGAGTCAACTATGCAGCTGACTCCATAGCTAAGAGAGCTTTAAGAGAGGAATGTAATGAAATTTGGATCCACGAGTTTCCTGAGTGGAT
TGTTAATCTGGTCATTCATGACCGTTTGTCTGTTGCCCTTGAGGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGAATTGTTGTTGGCGAAGTTCAACCGTAGCTTCTCGAATAGATGGTTTGCCTCGCACAGGAATTGGCGTTATATGTCGCGATTCTTCCGGATTATTGCTAGGAGCTTC
ATCTGCTTTTGTCAGCCTGGATTTTGACCCTCCTTTAGCCGAATTGCGGACTCTTTCAAAAGGCATGAAGTTGGCGATCTCCCTAGGTTACGGAAATGTGATTTTGGATT
CTGATTGTCTCCATGCGATTAATCTCATTAAGGGAGAATTGGAGGTGCGGAATGAACTGGGAATTATTATCGATGATCTTCGAGCAAAGACTTCCCTATTCAATGAGCTT
ATTTTTTCTTTTTCACCTAAAAGAGTCAACTATGCAGCTGACTCCATAGCTAAGAGAGCTTTAAGAGAGGAATGTAATGAAATTTGGATCCACGAGTTTCCTGAGTGGAT
TGTTAATCTGGTCATTCATGACCGTTTGTCTGTTGCCCTTGAGGCATAA
Protein sequenceShow/hide protein sequence
MNCCWRSSTVASRIDGLPRTGIGVICRDSSGLLLGASSAFVSLDFDPPLAELRTLSKGMKLAISLGYGNVILDSDCLHAINLIKGELEVRNELGIIIDDLRAKTSLFNEL
IFSFSPKRVNYAADSIAKRALREECNEIWIHEFPEWIVNLVIHDRLSVALEA