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Lag0029389 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0029389
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr8:38491161..38491854
RNA-Seq ExpressionLag0029389
SyntenyLag0029389
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3453480.1 reverse transcriptase [Gossypium australe]2.5e-1836.93Show/hide
Query:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKAN--DWWWRFTGFYRNPDQNKRKELWQLMERLSEIVN
        +VFL+ETK  S   D+++R  GF NGI+V + G+ GGL L W++   +T+ S SK HIDV +K       WRFTGFY +P    +K +W L+ERLS+  +
Subjt:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKAN--DWWWRFTGFYRNPDQNKRKELWQLMERLSEIVN

Query:  ----LQRDFDEIMFSKEKKGETSKNVRKLSKIANEKQPLSDMEKYLLGTRTLYERIGWAMGTTLRLAMTLGLTDRR
            +  DF+EIMFS EK+G   ++ R++    +       M+    GT   +ER G    T +R  +  G+ + +
Subjt:  ----LQRDFDEIMFSKEKKGETSKNVRKLSKIANEKQPLSDMEKYLLGTRTLYERIGWAMGTTLRLAMTLGLTDRR

KAA3478879.1 reverse transcriptase [Gossypium australe]3.9e-1944.8Show/hide
Query:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKAND--WWWRFTGFYRNPDQNKRKELWQLMERLSEIVN
        +VFL+ETK      +K++RK GF NG  V + G+SGGL L WK +  +T+ S S+ HIDV VK ++    WRFTGFY +P  N++ + W L+ RL E   
Subjt:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKAND--WWWRFTGFYRNPDQNKRKELWQLMERLSEIVN

Query:  LQRDFDEIMFSKEKKGETSKNVRKL
         QRDF+EI++  EK G   ++ RK+
Subjt:  LQRDFDEIMFSKEKKGETSKNVRKL

XP_012468868.1 PREDICTED: uncharacterized protein LOC105786945 [Gossypium raimondii]3.3e-1843.41Show/hide
Query:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTV--KANDWWWRFTGFYRNPDQNKRKELWQLMERLSEIVN
        +VF +ETK      ++I+R+ G+ NGI V S G  GGL L W+N+ DI++NS SKRHIDV V  K     WRFTGFY +P    R E W +++ L+  ++
Subjt:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTV--KANDWWWRFTGFYRNPDQNKRKELWQLMERLSEIVN

Query:  L----QRDFDEIMFSKEKKGETSKNVRKL
        L      DF+EIM+  EKKG   ++ R++
Subjt:  L----QRDFDEIMFSKEKKGETSKNVRKL

XP_030963678.1 uncharacterized protein LOC115984820 [Quercus lobata]4.3e-1847.5Show/hide
Query:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHID--VTVKANDWWWRFTGFYRNPDQNKRKELWQLMERLSEIVN
        +VFL+ETK  +   D IKRK+    G+ V S   +GGL LLWKN   + + + S RHID  +T K     WRFTGFY +P+  KR+E W+LME LS   N
Subjt:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHID--VTVKANDWWWRFTGFYRNPDQNKRKELWQLMERLSEIVN

Query:  L----QRDFDEIMFSKEKKG
        L      DF+EIM +KEK+G
Subjt:  L----QRDFDEIMFSKEKKG

XP_042944769.1 uncharacterized protein LOC122278652 [Carya illinoinensis]2.5e-1844.17Show/hide
Query:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKAND--WWWRFTGFYRNPDQNKRKELWQLMERLSEIVN
        I+FL ETK SS + D++K ++G +N ++V   G SGGL+LLW+ + ++T+ S SK HID  VK +D   WW+ TG YR+P+ ++R+E W LM  LS   +
Subjt:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKAND--WWWRFTGFYRNPDQNKRKELWQLMERLSEIVN

Query:  ----LQRDFDEIMFSKEKKG
            +  DF+EI    EKKG
Subjt:  ----LQRDFDEIMFSKEKKG

TrEMBL top hitse value%identityAlignment
A0A5B6U6G4 Reverse transcriptase1.2e-1836.93Show/hide
Query:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKAN--DWWWRFTGFYRNPDQNKRKELWQLMERLSEIVN
        +VFL+ETK  S   D+++R  GF NGI+V + G+ GGL L W++   +T+ S SK HIDV +K       WRFTGFY +P    +K +W L+ERLS+  +
Subjt:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKAN--DWWWRFTGFYRNPDQNKRKELWQLMERLSEIVN

Query:  ----LQRDFDEIMFSKEKKGETSKNVRKLSKIANEKQPLSDMEKYLLGTRTLYERIGWAMGTTLRLAMTLGLTDRR
            +  DF+EIMFS EK+G   ++ R++    +       M+    GT   +ER G    T +R  +  G+ + +
Subjt:  ----LQRDFDEIMFSKEKKGETSKNVRKLSKIANEKQPLSDMEKYLLGTRTLYERIGWAMGTTLRLAMTLGLTDRR

A0A5B6U9Z8 Reverse transcriptase2.1e-1841.89Show/hide
Query:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKANDW--WWRFTGFYRNPDQNKRKELWQLMERLSEIVN
        I+FL+ETK +S   + I+RK GF NGI V+++G  GGL+L WK   ++ + S S  HIDV V+  D    WRFTGFY  P +N+RKE W+L+  L    +
Subjt:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKANDW--WWRFTGFYRNPDQNKRKELWQLMERLSEIVN

Query:  ----LQRDFDEIMFSKEKKGETSKNVRKLSKIANEKQPLSDMEKYLLG
            +  DF+EI+FS EKKG  ++  R+++     ++ L   E Y LG
Subjt:  ----LQRDFDEIMFSKEKKGETSKNVRKLSKIANEKQPLSDMEKYLLG

A0A5B6WAT7 Reverse transcriptase1.9e-1944.8Show/hide
Query:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKAND--WWWRFTGFYRNPDQNKRKELWQLMERLSEIVN
        +VFL+ETK      +K++RK GF NG  V + G+SGGL L WK +  +T+ S S+ HIDV VK ++    WRFTGFY +P  N++ + W L+ RL E   
Subjt:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKAND--WWWRFTGFYRNPDQNKRKELWQLMERLSEIVN

Query:  LQRDFDEIMFSKEKKGETSKNVRKL
         QRDF+EI++  EK G   ++ RK+
Subjt:  LQRDFDEIMFSKEKKGETSKNVRKL

A0A5C7I5K8 DUF4283 domain-containing protein2.3e-1738.1Show/hide
Query:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKANDW-WWRFTGFYRNPDQNKRKELWQLMERLSEIVNL
        ++FL ETK     ++KI+  LG+  G  V S G+SGGL LLW    +++V S S  HIDV ++  D  WW+F+G Y  P+ NKR   W L+ RL E+  L
Subjt:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKANDW-WWRFTGFYRNPDQNKRKELWQLMERLSEIVNL

Query:  ----QRDFDEIMFSKEKKGETSKNVRKLSKIANEKQPLSDMEKYLLG
              DF+E++   EK G + K +R + K    +Q + D +   LG
Subjt:  ----QRDFDEIMFSKEKKGETSKNVRKLSKIANEKQPLSDMEKYLLG

A0A7J8WBU2 Uncharacterized protein (Fragment)1.0e-1741.86Show/hide
Query:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKAND--WWWRFTGFYRNPDQNKRKELWQLMERLSEIVN
        +VF +ETK      ++++R  G+ NGI V S G+ GGL L W+N+ DI+++S SKRHIDV V  N+    WRFTGFY +P    R E W +++ L+   +
Subjt:  IVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKAND--WWWRFTGFYRNPDQNKRKELWQLMERLSEIVN

Query:  LQ----RDFDEIMFSKEKKGETSKNVRKL
        L      DF+EIM+  EKKG   ++ R++
Subjt:  LQ----RDFDEIMFSKEKKGETSKNVRKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATAGTTTTTTTAGTTGAAACTAAAAGTTCTAGTCTTATGTCGGACAAGATCAAAAGGAAGTTGGGATTTAATAATGGCATTAGTGTGAGCAGCAGTGGCAACAGTGG
AGGGCTGACATTGTTATGGAAAAATCAATATGATATCACAGTGAACTCGGTCTCCAAACGTCATATTGATGTGACCGTAAAGGCTAATGATTGGTGGTGGAGATTCACGG
GATTTTACAGGAACCCGGATCAAAACAAGAGAAAAGAATTGTGGCAGCTTATGGAAAGATTAAGTGAAATAGTCAATCTCCAAAGGGACTTCGATGAAATCATGTTTAGC
AAAGAAAAGAAAGGAGAAACTTCCAAGAATGTTAGGAAACTTTCTAAAATCGCCAATGAGAAACAGCCCCTCTCTGACATGGAGAAGTATCTGTTGGGGACGAGAACTTT
GTATGAAAGGATAGGGTGGGCAATGGGAACTACATTGAGATTGGCAATGACCCTTGGATTAACAGATCGGAGAACCCCAAGCCAATCCTCACTAAGGACACTCTCAATGG
GCAAAAAGTCTAGAACATTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATAGTTTTTTTAGTTGAAACTAAAAGTTCTAGTCTTATGTCGGACAAGATCAAAAGGAAGTTGGGATTTAATAATGGCATTAGTGTGAGCAGCAGTGGCAACAGTGG
AGGGCTGACATTGTTATGGAAAAATCAATATGATATCACAGTGAACTCGGTCTCCAAACGTCATATTGATGTGACCGTAAAGGCTAATGATTGGTGGTGGAGATTCACGG
GATTTTACAGGAACCCGGATCAAAACAAGAGAAAAGAATTGTGGCAGCTTATGGAAAGATTAAGTGAAATAGTCAATCTCCAAAGGGACTTCGATGAAATCATGTTTAGC
AAAGAAAAGAAAGGAGAAACTTCCAAGAATGTTAGGAAACTTTCTAAAATCGCCAATGAGAAACAGCCCCTCTCTGACATGGAGAAGTATCTGTTGGGGACGAGAACTTT
GTATGAAAGGATAGGGTGGGCAATGGGAACTACATTGAGATTGGCAATGACCCTTGGATTAACAGATCGGAGAACCCCAAGCCAATCCTCACTAAGGACACTCTCAATGG
GCAAAAAGTCTAGAACATTCTGA
Protein sequenceShow/hide protein sequence
MIVFLVETKSSSLMSDKIKRKLGFNNGISVSSSGNSGGLTLLWKNQYDITVNSVSKRHIDVTVKANDWWWRFTGFYRNPDQNKRKELWQLMERLSEIVNLQRDFDEIMFS
KEKKGETSKNVRKLSKIANEKQPLSDMEKYLLGTRTLYERIGWAMGTTLRLAMTLGLTDRRTPSQSSLRTLSMGKKSRTF