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Lag0029419 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0029419
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionF-box domain-containing protein
Genome locationchr8:38797195..38798032
RNA-Seq ExpressionLag0029419
SyntenyLag0029419
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR036047 - F-box-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8653057.1 hypothetical protein Csa_020016 [Cucumis sativus]2.4e-1635.59Show/hide
Query:  STKKMIMNRNWAVPPR-DEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSS-QFLSNNLLLSMFDHNPDCIPFEISDLCNPKLYCLDLSLT--------
        S ++M +N    +PP   + IFSKL IS+LP  RLV  +WN L+LD+ASS+  QFL N  LLS  D   +        LCNPK++C++L           
Subjt:  STKKMIMNRNWAVPPR-DEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSS-QFLSNNLLLSMFDHNPDCIPFEISDLCNPKLYCLDLSLT--------

Query:  --------------------TLIVIGRASSLSIPAMANDDYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKT
                            T+I+ G  + L + +  +D  +  GIFNPM+ EF +V    T +D Y++G GFSP T
Subjt:  --------------------TLIVIGRASSLSIPAMANDDYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKT

XP_004141602.1 F-box protein At3g07870 [Cucumis sativus]1.3e-1927.3Show/hide
Query:  KMIMNRNWAVPPR-DEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSSQFLSNNLLLSMFD--------HNPDCIPFEISDLCNPKLYCLDLSLTT---
        K  +N    +PP   EVI  KL IS+LP  RLV ++WNHL+L++A SSS+F+ N  L + ++         NP C P   +  CNPK+YC+D++ T    
Subjt:  KMIMNRNWAVPPR-DEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSSQFLSNNLLLSMFD--------HNPDCIPFEISDLCNPKLYCLDLSLTT---

Query:  -------------LIVIGRASSLSIPAMANDDYFHDGIFNPMSGEFF------KVRGPATEEDTYVFGLGFSPKTN------------------------
                     + ++   + L       D+ F +GI NPM+ EFF      KV+    E+ +  +G GF+ KT                         
Subjt:  -------------LIVIGRASSLSIPAMANDDYFHDGIFNPMSGEFF------KVRGPATEEDTYVFGLGFSPKTN------------------------

Query:  ----------------------------------------------------------------------------------------------HLWASH
                                                                                                       LW   
Subjt:  ----------------------------------------------------------------------------------------------HLWASH

Query:  GPIRKDSWVKDFIIHDIPS---DRYFCIVKVGEDREILFLAGDDL-FCLDKTGRKIKIK---TLVPNGRG-VVG-VYHIDSLNFGSIPNILE
        G   KD WVK+F++HDI     D +  +VK+ ED E  F  G  L  C DKTG +IK K     V NGRG +VG + H DSLNFGS+PNIL+
Subjt:  GPIRKDSWVKDFIIHDIPS---DRYFCIVKVGEDREILFLAGDDL-FCLDKTGRKIKIK---TLVPNGRG-VVG-VYHIDSLNFGSIPNILE

XP_008459707.1 PREDICTED: F-box protein At3g07870-like [Cucumis melo]4.5e-2325.99Show/hide
Query:  MESTKKMIMNRNWAVPPR-DEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSSQFLSNNLLLSMFDHNPDCIPFEISDLCNPKLYCLDLSLTT------
        +E+ K++ MN N  +PP     IFSKL ISNLP  R+VCK+WN+L+L++ASS+    +  L LSM D   + IPF+ +  CNPK++C+D+   T      
Subjt:  MESTKKMIMNRNWAVPPR-DEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSSQFLSNNLLLSMFDHNPDCIPFEISDLCNPKLYCLDLSLTT------

Query:  --------LIVIGRASSLSIPAMANDDYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKTNHL-------------------------------WA
                + ++   + L        D   +GI NPM+ EF ++  P  E D +  G GFSP+T                                  W 
Subjt:  --------LIVIGRASSLSIPAMANDDYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKTNHL-------------------------------WA

Query:  ----------SHGPI------------------------------------------------------------------------------RKDSWVK
                   HG                                                                                +KDSW+K
Subjt:  ----------SHGPI------------------------------------------------------------------------------RKDSWVK

Query:  DFIIHDIPSDRYFCIVKVGEDREILFLAGDDLFCLDKTGRKIKIKTLVPNGR--GVVGVYHIDSLNFGSIPNILEEE
        +F I     +  F ++ V ED E+L    D++F LDK+ +KIKIKTL  +     V+G   I+S+NF    NIL  +
Subjt:  DFIIHDIPSDRYFCIVKVGEDREILFLAGDDLFCLDKTGRKIKIKTLVPNGR--GVVGVYHIDSLNFGSIPNILEEE

XP_011648473.2 F-box protein At3g07870 [Cucumis sativus]2.4e-1635.59Show/hide
Query:  STKKMIMNRNWAVPPR-DEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSS-QFLSNNLLLSMFDHNPDCIPFEISDLCNPKLYCLDLSLT--------
        S ++M +N    +PP   + IFSKL IS+LP  RLV  +WN L+LD+ASS+  QFL N  LLS  D   +        LCNPK++C++L           
Subjt:  STKKMIMNRNWAVPPR-DEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSS-QFLSNNLLLSMFDHNPDCIPFEISDLCNPKLYCLDLSLT--------

Query:  --------------------TLIVIGRASSLSIPAMANDDYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKT
                            T+I+ G  + L + +  +D  +  GIFNPM+ EF +V    T +D Y++G GFSP T
Subjt:  --------------------TLIVIGRASSLSIPAMANDDYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKT

XP_038890298.1 F-box protein At3g07870-like [Benincasa hispida]6.5e-1424.52Show/hide
Query:  IFSKLPISNLPDIRLVCKSWNHLLLDFASSS-SQFLSNNLLLSMFDHNPD-------CIPFEI-----------SDLCNPKLYCLDLSLTTLIVIGRASS
        IFSKL IS+LP++RL+ K+WN ++LD+A+SS  +FL+N   LS  D+  D       CI F+            S+       C D   T + ++   S 
Subjt:  IFSKLPISNLPDIRLVCKSWNHLLLDFASSS-SQFLSNNLLLSMFDHNPD-------CIPFEI-----------SDLCNPKLYCLDLSLTTLIVIGRASS

Query:  LSIPAMANDDYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKTNHLW-------------------------------ASHGPIR-----------
        L +     +    DGIFNPM+ EF +V     + D Y FG GF+  T                                   A+H   R           
Subjt:  LSIPAMANDDYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKTNHLW-------------------------------ASHGPIR-----------

Query:  ----------------------------------------------------------------------------------KDSWVKDFIIHDIPSD-R
                                                                                          KD W+++F++ DIP+D  
Subjt:  ----------------------------------------------------------------------------------KDSWVKDFIIHDIPSD-R

Query:  YFCIVKVGEDREILFLAGDDLFCL--DKTGRKIKIKTLVPNGRGVVGVYHIDSLNFGSIPNIL
           ++K  ED EIL +   D FC     TGRK   K +  N + +  V  I SLNFG +PNIL
Subjt:  YFCIVKVGEDREILFLAGDDLFCL--DKTGRKIKIKTLVPNGRGVVGVYHIDSLNFGSIPNIL

TrEMBL top hitse value%identityAlignment
A0A0A0KSJ2 F-box domain-containing protein6.5e-2027.3Show/hide
Query:  KMIMNRNWAVPPR-DEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSSQFLSNNLLLSMFD--------HNPDCIPFEISDLCNPKLYCLDLSLTT---
        K  +N    +PP   EVI  KL IS+LP  RLV ++WNHL+L++A SSS+F+ N  L + ++         NP C P   +  CNPK+YC+D++ T    
Subjt:  KMIMNRNWAVPPR-DEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSSQFLSNNLLLSMFD--------HNPDCIPFEISDLCNPKLYCLDLSLTT---

Query:  -------------LIVIGRASSLSIPAMANDDYFHDGIFNPMSGEFF------KVRGPATEEDTYVFGLGFSPKTN------------------------
                     + ++   + L       D+ F +GI NPM+ EFF      KV+    E+ +  +G GF+ KT                         
Subjt:  -------------LIVIGRASSLSIPAMANDDYFHDGIFNPMSGEFF------KVRGPATEEDTYVFGLGFSPKTN------------------------

Query:  ----------------------------------------------------------------------------------------------HLWASH
                                                                                                       LW   
Subjt:  ----------------------------------------------------------------------------------------------HLWASH

Query:  GPIRKDSWVKDFIIHDIPS---DRYFCIVKVGEDREILFLAGDDL-FCLDKTGRKIKIK---TLVPNGRG-VVG-VYHIDSLNFGSIPNILE
        G   KD WVK+F++HDI     D +  +VK+ ED E  F  G  L  C DKTG +IK K     V NGRG +VG + H DSLNFGS+PNIL+
Subjt:  GPIRKDSWVKDFIIHDIPS---DRYFCIVKVGEDREILFLAGDDL-FCLDKTGRKIKIK---TLVPNGRG-VVG-VYHIDSLNFGSIPNILE

A0A0A0LUP7 F-box domain-containing protein6.3e-1534.68Show/hide
Query:  KKMIMNRNWAVPPR-DEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSS-QFLSNNLLLSMFDHNPDCIPFEISDLCNPKLYCLDLSLT----------
        ++M ++    +PP   ++IFSKL ISNLP  R VCK+WNHL+L +ASS+  QFL+N  LLS  D   +       +LCNPK++ ++L  T          
Subjt:  KKMIMNRNWAVPPR-DEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSS-QFLSNNLLLSMFDHNPDCIPFEISDLCNPKLYCLDLSLT----------

Query:  ----------------TLIVIGRASSLSIPAMANDDYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKT
                         +++    + L   +  +D  +  GIFNPM+ EFF+V    T +D Y +G G SP T
Subjt:  ----------------TLIVIGRASSLSIPAMANDDYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKT

A0A0A0LWG1 F-box domain-containing protein1.1e-1635.59Show/hide
Query:  STKKMIMNRNWAVPPR-DEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSS-QFLSNNLLLSMFDHNPDCIPFEISDLCNPKLYCLDLSLT--------
        S ++M +N    +PP   + IFSKL IS+LP  RLV  +WN L+LD+ASS+  QFL N  LLS  D   +        LCNPK++C++L           
Subjt:  STKKMIMNRNWAVPPR-DEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSS-QFLSNNLLLSMFDHNPDCIPFEISDLCNPKLYCLDLSLT--------

Query:  --------------------TLIVIGRASSLSIPAMANDDYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKT
                            T+I+ G  + L + +  +D  +  GIFNPM+ EF +V    T +D Y++G GFSP T
Subjt:  --------------------TLIVIGRASSLSIPAMANDDYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKT

A0A1S3CB99 F-box protein At3g07870-like2.2e-2325.99Show/hide
Query:  MESTKKMIMNRNWAVPPR-DEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSSQFLSNNLLLSMFDHNPDCIPFEISDLCNPKLYCLDLSLTT------
        +E+ K++ MN N  +PP     IFSKL ISNLP  R+VCK+WN+L+L++ASS+    +  L LSM D   + IPF+ +  CNPK++C+D+   T      
Subjt:  MESTKKMIMNRNWAVPPR-DEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSSQFLSNNLLLSMFDHNPDCIPFEISDLCNPKLYCLDLSLTT------

Query:  --------LIVIGRASSLSIPAMANDDYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKTNHL-------------------------------WA
                + ++   + L        D   +GI NPM+ EF ++  P  E D +  G GFSP+T                                  W 
Subjt:  --------LIVIGRASSLSIPAMANDDYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKTNHL-------------------------------WA

Query:  ----------SHGPI------------------------------------------------------------------------------RKDSWVK
                   HG                                                                                +KDSW+K
Subjt:  ----------SHGPI------------------------------------------------------------------------------RKDSWVK

Query:  DFIIHDIPSDRYFCIVKVGEDREILFLAGDDLFCLDKTGRKIKIKTLVPNGR--GVVGVYHIDSLNFGSIPNILEEE
        +F I     +  F ++ V ED E+L    D++F LDK+ +KIKIKTL  +     V+G   I+S+NF    NIL  +
Subjt:  DFIIHDIPSDRYFCIVKVGEDREILFLAGDDLFCLDKTGRKIKIKTLVPNGR--GVVGVYHIDSLNFGSIPNILEEE

A0A5A7TCF3 F-box protein3.1e-1426.61Show/hide
Query:  IFSKLPISNLPDIRLVCKSWNHLLLDFASSSSQFLSNNLLLSMFDHNPDCIPFEISDLCNPKLYC----------LDLSLTTLIVIGRASSLS-------
        I  +L ISNLP++R+V K+WN  +LD+A   S   +N  LLS  D  P        DL NPK+YC          LDL     +   +  SLS       
Subjt:  IFSKLPISNLPDIRLVCKSWNHLLLDFASSSSQFLSNNLLLSMFDHNPDCIPFEISDLCNPKLYC----------LDLSLTTLIVIGRASSLS-------

Query:  IPAMAND----------DYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKTNH-------------------------------------------
        IP M N            +F DGIFNPM+ EF +V     + D Y +GLGFSP T                                             
Subjt:  IPAMAND----------DYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKTNH-------------------------------------------

Query:  ----------LWASH----------------------------GPI--------------------------------------RKDSWVKDFIIHDIPS
                   W                               GP                                        KD W+K+F+I DIP+
Subjt:  ----------LWASH----------------------------GPI--------------------------------------RKDSWVKDFIIHDIPS

Query:  DRYFC---IVKVGEDREILFLAGDDLFCL--DKTGRKIKIKTLVPNGRGVVGVYHIDSLNFGSIPNILEEEE
        +  +C   ++K  ED EIL +   D FC     TGRK   K +  N +    V  I+ LNFG +PNIL  EE
Subjt:  DRYFC---IVKVGEDREILFLAGDDLFCL--DKTGRKIKIKTLVPNGRGVVGVYHIDSLNFGSIPNILEEEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGTACGAAGAAGATGATTATGAACAGAAATTGGGCGGTTCCGCCGCGTGATGAGGTAATCTTCTCCAAACTCCCTATCTCCAATTTGCCCGACATCAGGCTCGT
CTGTAAATCTTGGAATCATCTGCTTTTAGATTTCGCTTCTTCTTCCTCTCAATTCCTTTCAAACAATCTCCTTCTCTCTATGTTTGATCACAACCCCGATTGCATTCCTT
TCGAGATTAGTGATCTGTGCAATCCCAAGCTCTATTGTCTCGATTTAAGTTTGACGACGCTGATTGTGATTGGTCGTGCATCTTCATTATCGATTCCTGCAATGGCCAAC
GACGACTATTTCCATGATGGCATATTTAATCCAATGAGTGGCGAGTTCTTCAAAGTTCGTGGACCTGCAACAGAGGAAGATACTTACGTATTCGGTTTAGGTTTCAGCCC
TAAGACCAACCATTTATGGGCTTCCCACGGACCCATTCGCAAAGATTCATGGGTGAAAGACTTTATTATTCATGACATACCGAGTGACAGATATTTTTGCATCGTTAAGG
TCGGTGAAGATAGAGAGATATTGTTTCTGGCCGGAGATGACTTGTTTTGCTTGGATAAGACTGGGAGGAAGATCAAGATCAAAACGTTGGTTCCAAATGGCAGAGGAGTT
GTAGGAGTTTATCATATAGATTCCTTGAATTTTGGTTCTATCCCAAACATTTTGGAGGAGGAGGAGACGAACGAAGCTTTGTTTCATTTTATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGTACGAAGAAGATGATTATGAACAGAAATTGGGCGGTTCCGCCGCGTGATGAGGTAATCTTCTCCAAACTCCCTATCTCCAATTTGCCCGACATCAGGCTCGT
CTGTAAATCTTGGAATCATCTGCTTTTAGATTTCGCTTCTTCTTCCTCTCAATTCCTTTCAAACAATCTCCTTCTCTCTATGTTTGATCACAACCCCGATTGCATTCCTT
TCGAGATTAGTGATCTGTGCAATCCCAAGCTCTATTGTCTCGATTTAAGTTTGACGACGCTGATTGTGATTGGTCGTGCATCTTCATTATCGATTCCTGCAATGGCCAAC
GACGACTATTTCCATGATGGCATATTTAATCCAATGAGTGGCGAGTTCTTCAAAGTTCGTGGACCTGCAACAGAGGAAGATACTTACGTATTCGGTTTAGGTTTCAGCCC
TAAGACCAACCATTTATGGGCTTCCCACGGACCCATTCGCAAAGATTCATGGGTGAAAGACTTTATTATTCATGACATACCGAGTGACAGATATTTTTGCATCGTTAAGG
TCGGTGAAGATAGAGAGATATTGTTTCTGGCCGGAGATGACTTGTTTTGCTTGGATAAGACTGGGAGGAAGATCAAGATCAAAACGTTGGTTCCAAATGGCAGAGGAGTT
GTAGGAGTTTATCATATAGATTCCTTGAATTTTGGTTCTATCCCAAACATTTTGGAGGAGGAGGAGACGAACGAAGCTTTGTTTCATTTTATTTAG
Protein sequenceShow/hide protein sequence
MESTKKMIMNRNWAVPPRDEVIFSKLPISNLPDIRLVCKSWNHLLLDFASSSSQFLSNNLLLSMFDHNPDCIPFEISDLCNPKLYCLDLSLTTLIVIGRASSLSIPAMAN
DDYFHDGIFNPMSGEFFKVRGPATEEDTYVFGLGFSPKTNHLWASHGPIRKDSWVKDFIIHDIPSDRYFCIVKVGEDREILFLAGDDLFCLDKTGRKIKIKTLVPNGRGV
VGVYHIDSLNFGSIPNILEEEETNEALFHFI