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Lag0029511 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0029511
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr8:39641183..39642602
RNA-Seq ExpressionLag0029511
SyntenyLag0029511
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.9e-1543.75Show/hide
Query:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSL
        F  ++ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C +C    E ++H+F+HC +S  +W+K    K LL   S P  ++SL
Subjt:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSL

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.0e-1540.95Show/hide
Query:  SDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQ
        S+++     F  S+ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C +C    E ++H+F+HC +S  +W+K    + LL   S P 
Subjt:  SDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQ

Query:  QIRSL
         ++SL
Subjt:  QIRSL

KAA0044451.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.8e-1547.37Show/hide
Query:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNK
        F  ++ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L   AL+P+ C +C    E ++H+F+HC +S  +W+K
Subjt:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNK

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.0e-1540.95Show/hide
Query:  SDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQ
        S+++     F  S+ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C +C    E ++H+F+HC +S  +W+K    + LL   S P 
Subjt:  SDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQ

Query:  QIRSL
         ++SL
Subjt:  QIRSL

TYK29578.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.8e-1547.37Show/hide
Query:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNK
        F  ++ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L   AL+P+ C +C    E ++H+F+HC +S  +W+K
Subjt:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNK

TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.4e-1543.75Show/hide
Query:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSL
        F  ++ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C +C    E ++H+F+HC +S  +W+K    K LL   S P  ++SL
Subjt:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQQIRSL

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein4.9e-1640.95Show/hide
Query:  SDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQ
        S+++     F  S+ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C +C    E ++H+F+HC +S  +W+K    + LL   S P 
Subjt:  SDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQ

Query:  QIRSL
         ++SL
Subjt:  QIRSL

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein4.9e-1640.95Show/hide
Query:  SDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQ
        S+++     F  S+ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L    L+P+ C +C    E ++H+F+HC +S  +W+K    + LL   S P 
Subjt:  SDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNKLFSVKGLL--FSRPQ

Query:  QIRSL
         ++SL
Subjt:  QIRSL

A0A5A7TSA7 LINE-1 retrotransposable element ORF2 protein1.9e-1547.37Show/hide
Query:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNK
        F  ++ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L   AL+P+ C +C    E ++H+F+HC +S  +W+K
Subjt:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNK

A0A5D3E1E3 LINE-1 retrotransposable element ORF2 protein1.9e-1547.37Show/hide
Query:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNK
        F  ++ K LWK  FP+KCKFF+WTL+H  +NTAD LQ++L   AL+P+ C +C    E ++H+F+HC +S  +W+K
Subjt:  FPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSESLDHIFLHCHFSAVIWNK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGATTCACTCTCACAGAAGCAATGCACGAAGAATAGAGAAGAAGAAGAACAGAATGCACCAGATAATACAAGATGATGATCTATTTATAGGTTTCGAAGTAATGGA
CTCTAAAGCAGAGGCTGAGGATCAGGTTGGTTTCAACCGTTTTATCAGGAAGCTTGGTCTGAAGTTTCTCGTAGCTGGAATTTCTTCCCTAAACGTGCTCTTTTTGATTG
AGATATTCAAGCCTGGGAGGAGGTGGCTGCCACCTTCCCATGCCCGTCTTCTCATGAGAGGTCGGACTATTATAGATGGATTGGCTCCACAGATGGGGTCTTTAATACCG
CTTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCG
TGCTTTATGGCGGCCTTCGGACAGCACGCATGGGGCACAGGCTTTCCCGGAGTCGGTGCTGAAAAATCTATGGAAAGCATCCTTCCCTAGAAAATGCAAATTTTTCCTCT
GGACTCTTCTTCACAGGAGACTTAATACGGCTGACCTCCTTCAAAGAAAGCTCAAACCTTCGGCTTTAAATCCCAGCAGATGTGTTCTTTGCAAAGCCCAATCAGAGTCG
TTAGATCATATTTTCCTTCATTGTCACTTCTCAGCTGTTATTTGGAACAAGCTTTTCAGTGTTAAGGGTCTCCTCTTCTCTCGTCCTCAACAGATTCGGTCCTTGTGCTT
GGAATTTCTTGCCATTAAACCGACATCTCATATTTTCCTTCATTGCCATTTTGACTGCAAGCTGGATATGGGAGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGATTCACTCTCACAGAAGCAATGCACGAAGAATAGAGAAGAAGAAGAACAGAATGCACCAGATAATACAAGATGATGATCTATTTATAGGTTTCGAAGTAATGGA
CTCTAAAGCAGAGGCTGAGGATCAGGTTGGTTTCAACCGTTTTATCAGGAAGCTTGGTCTGAAGTTTCTCGTAGCTGGAATTTCTTCCCTAAACGTGCTCTTTTTGATTG
AGATATTCAAGCCTGGGAGGAGGTGGCTGCCACCTTCCCATGCCCGTCTTCTCATGAGAGGTCGGACTATTATAGATGGATTGGCTCCACAGATGGGGTCTTTAATACCG
CTTCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCG
TGCTTTATGGCGGCCTTCGGACAGCACGCATGGGGCACAGGCTTTCCCGGAGTCGGTGCTGAAAAATCTATGGAAAGCATCCTTCCCTAGAAAATGCAAATTTTTCCTCT
GGACTCTTCTTCACAGGAGACTTAATACGGCTGACCTCCTTCAAAGAAAGCTCAAACCTTCGGCTTTAAATCCCAGCAGATGTGTTCTTTGCAAAGCCCAATCAGAGTCG
TTAGATCATATTTTCCTTCATTGTCACTTCTCAGCTGTTATTTGGAACAAGCTTTTCAGTGTTAAGGGTCTCCTCTTCTCTCGTCCTCAACAGATTCGGTCCTTGTGCTT
GGAATTTCTTGCCATTAAACCGACATCTCATATTTTCCTTCATTGCCATTTTGACTGCAAGCTGGATATGGGAGGATGA
Protein sequenceShow/hide protein sequence
MAIHSHRSNARRIEKKKNRMHQIIQDDDLFIGFEVMDSKAEAEDQVGFNRFIRKLGLKFLVAGISSLNVLFLIEIFKPGRRWLPPSHARLLMRGRTIIDGLAPQMGSLIP
LLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRALWRPSDSTHGAQAFPESVLKNLWKASFPRKCKFFLWTLLHRRLNTADLLQRKLKPSALNPSRCVLCKAQSES
LDHIFLHCHFSAVIWNKLFSVKGLLFSRPQQIRSLCLEFLAIKPTSHIFLHCHFDCKLDMGG