CuGenDBv2

Gene ID	Lag0029520
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr8:39748362..39749024
RNA-Seq Expression	Lag0029520
Synteny	Lag0029520
Gene Ontology terms	GO:0006749 - glutathione metabolic process (biological process) GO:0004364 - glutathione transferase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0046195.1 putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa]

1.3e-34

49.75

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Query:  MKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSAN
        M+ K KL  ++KG MSLKEYF KIQQ  DALA++ KP+  +DHIL+IL+GLG+EY+S++S+ISA+    SV + MSLLLTQE++IESK+TS E SLP+ N
Subjt:  MKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSAN

Query:  LMVQTK-----PPETDVT-KNVSNNF---TSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRYA----PSGHQ-NNSGSFP
        +   T+       E++VT +  SNN    T+N+   ++ R GGR    +NRGGR   NR++ QCQ+C KF H A +C+FRY     PSG+  N+S +FP
Subjt:  LMVQTK-----PPETDVT-KNVSNNF---TSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRYA----PSGHQ-NNSGSFP

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.2e-41

52.07

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Query:  MKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSAN
        M+ K KL  I+KG M LKEYF KI Q  DALA++ KPV  +DHIL+IL+GLGS+Y+SM+SVISA+    SV EVMSLLLTQE++ ESKL S E +LPS N
Subjt:  MKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSAN

Query:  LMVQT--KPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRYAPSGHQNNSGSFPPNFN-QFNRSPSF
        ++ QT  K  E+ +  N +N   +++ N   GRG GR    +NRG R   NRN+PQCQ+C K  ++A +CFFRY P    N+SG  P + N  +    + 
Subjt:  LMVQT--KPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRYAPSGHQNNSGSFPPNFN-QFNRSPSF

Query:  PQMSAMVATPDLNHDTN
        PQMSAMVA  DLN D+N
Subjt:  PQMSAMVATPDLNHDTN

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.2e-41

52.07

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Query:  MKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSAN
        M+ K KL  I+KG M LKEYF KI Q  DALA++ KPV  +DHIL+IL+GLGS+Y+SM+SVISA+    SV EVMSLLLTQE++ ESKL S E +LPS N
Subjt:  MKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSAN

Query:  LMVQT--KPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRYAPSGHQNNSGSFPPNFN-QFNRSPSF
        ++ QT  K  E+ +  N +N   +++ N   GRG GR    +NRG R   NRN+PQCQ+C K  ++A +CFFRY P    N+SG  P + N  +    + 
Subjt:  LMVQT--KPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRYAPSGHQNNSGSFPPNFN-QFNRSPSF

Query:  PQMSAMVATPDLNHDTN
        PQMSAMVA  DLN D+N
Subjt:  PQMSAMVATPDLNHDTN

XP_022136882.1 dr1-associated corepressor homolog isoform X1 [Momordica charantia]

3.3e-30

39.08

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Query:  MMKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSA
        +M++K+KL+ I+KG + LK+YF K++   D+LAA GK V +EDHI+ IL+GL SE+ES VSVISA+   Q++ EV SLLL+ E R E    +T+G+LPS 
Subjt:  MMKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSA

Query:  NLMVQTKPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRY-----APSGHQN--------NSGSFPP
        NL  QTK   +  + +    +  N    NR +  G   +      R+WN+ NRPQCQ+ GKF HTA +C+ R+      P+G  +        ++ S   
Subjt:  NLMVQTKPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRY-----APSGHQN--------NSGSFPP

Query:  NFNQF-NRSPSF---------PQMSAMVATPDLNHDTN
        N   F N+  +F           M+A +A  D N DTN
Subjt:  NFNQF-NRSPSF---------PQMSAMVATPDLNHDTN

XP_022136883.1 dr1-associated corepressor homolog isoform X2 [Momordica charantia]

3.3e-30

39.08

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Query:  MMKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSA
        +M++K+KL+ I+KG + LK+YF K++   D+LAA GK V +EDHI+ IL+GL SE+ES VSVISA+   Q++ EV SLLL+ E R E    +T+G+LPS 
Subjt:  MMKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSA

Query:  NLMVQTKPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRY-----APSGHQN--------NSGSFPP
        NL  QTK   +  + +    +  N    NR +  G   +      R+WN+ NRPQCQ+ GKF HTA +C+ R+      P+G  +        ++ S   
Subjt:  NLMVQTKPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRY-----APSGHQN--------NSGSFPP

Query:  NFNQF-NRSPSF---------PQMSAMVATPDLNHDTN
        N   F N+  +F           M+A +A  D N DTN
Subjt:  NFNQF-NRSPSF---------PQMSAMVATPDLNHDTN

TrEMBL top hits

e value

%identity

Alignment

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.0e-41

52.07

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Query:  MKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSAN
        M+ K KL  I+KG M LKEYF KI Q  DALA++ KPV  +DHIL+IL+GLGS+Y+SM+SVISA+    SV EVMSLLLTQE++ ESKL S E +LPS N
Subjt:  MKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSAN

Query:  LMVQT--KPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRYAPSGHQNNSGSFPPNFN-QFNRSPSF
        ++ QT  K  E+ +  N +N   +++ N   GRG GR    +NRG R   NRN+PQCQ+C K  ++A +CFFRY P    N+SG  P + N  +    + 
Subjt:  LMVQT--KPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRYAPSGHQNNSGSFPPNFN-QFNRSPSF

Query:  PQMSAMVATPDLNHDTN
        PQMSAMVA  DLN D+N
Subjt:  PQMSAMVATPDLNHDTN

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.0e-41

52.07

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Query:  MKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSAN
        M+ K KL  I+KG M LKEYF KI Q  DALA++ KPV  +DHIL+IL+GLGS+Y+SM+SVISA+    SV EVMSLLLTQE++ ESKL S E +LPS N
Subjt:  MKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSAN

Query:  LMVQT--KPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRYAPSGHQNNSGSFPPNFN-QFNRSPSF
        ++ QT  K  E+ +  N +N   +++ N   GRG GR    +NRG R   NRN+PQCQ+C K  ++A +CFFRY P    N+SG  P + N  +    + 
Subjt:  LMVQT--KPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRYAPSGHQNNSGSFPPNFN-QFNRSPSF

Query:  PQMSAMVATPDLNHDTN
        PQMSAMVA  DLN D+N
Subjt:  PQMSAMVATPDLNHDTN

A0A5D3CRZ7 Putative Ty1-copia-like retrotransposon

6.3e-35

49.75

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Query:  MKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSAN
        M+ K KL  ++KG MSLKEYF KIQQ  DALA++ KP+  +DHIL+IL+GLG+EY+S++S+ISA+    SV + MSLLLTQE++IESK+TS E SLP+ N
Subjt:  MKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSAN

Query:  LMVQTK-----PPETDVT-KNVSNNF---TSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRYA----PSGHQ-NNSGSFP
        +   T+       E++VT +  SNN    T+N+   ++ R GGR    +NRGGR   NR++ QCQ+C KF H A +C+FRY     PSG+  N+S +FP
Subjt:  LMVQTK-----PPETDVT-KNVSNNF---TSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRYA----PSGHQ-NNSGSFP

A0A6J1C6N9 dr1-associated corepressor homolog isoform X1

1.6e-30

39.08

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Query:  MMKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSA
        +M++K+KL+ I+KG + LK+YF K++   D+LAA GK V +EDHI+ IL+GL SE+ES VSVISA+   Q++ EV SLLL+ E R E    +T+G+LPS 
Subjt:  MMKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSA

Query:  NLMVQTKPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRY-----APSGHQN--------NSGSFPP
        NL  QTK   +  + +    +  N    NR +  G   +      R+WN+ NRPQCQ+ GKF HTA +C+ R+      P+G  +        ++ S   
Subjt:  NLMVQTKPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRY-----APSGHQN--------NSGSFPP

Query:  NFNQF-NRSPSF---------PQMSAMVATPDLNHDTN
        N   F N+  +F           M+A +A  D N DTN
Subjt:  NFNQF-NRSPSF---------PQMSAMVATPDLNHDTN

A0A6J1C8R2 dr1-associated corepressor homolog isoform X2

1.6e-30

39.08

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Query:  MMKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSA
        +M++K+KL+ I+KG + LK+YF K++   D+LAA GK V +EDHI+ IL+GL SE+ES VSVISA+   Q++ EV SLLL+ E R E    +T+G+LPS 
Subjt:  MMKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSA

Query:  NLMVQTKPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRY-----APSGHQN--------NSGSFPP
        NL  QTK   +  + +    +  N    NR +  G   +      R+WN+ NRPQCQ+ GKF HTA +C+ R+      P+G  +        ++ S   
Subjt:  NLMVQTKPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRY-----APSGHQN--------NSGSFPP

Query:  NFNQF-NRSPSF---------PQMSAMVATPDLNHDTN
        N   F N+  +F           M+A +A  D N DTN
Subjt:  NFNQF-NRSPSF---------PQMSAMVATPDLNHDTN

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

3.1e-07

26.11

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Query:  KIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSANL
        +++T+L+   KG  ++ +Y   +    D LA +GKP+D ++ +  +L  L  EY+ ++  I+AK  P ++ E+   LL  E++I +  ++T         
Subjt:  KIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSANL

Query:  MVQTKPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSW----------NNRNRP---QCQLCGKFNHTAPKC
             P   +   + +   T+N  NGN  R       NNN   + W          NN+++P   +CQ+CG   H+A +C
Subjt:  MVQTKPPETDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSW----------NNRNRP---QCQLCGKFNHTAPKC

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

3.2e-04

27.11

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Query:  DALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSANLMVQTKPPETDVTKNVSNNFTSNAGNGN
        D LA +GKP+D ++ +  +L  L  +Y+ ++  I+AK  P S+ E+   L+ +E+++         +L SA ++         +T NV  +  +N     
Subjt:  DALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSANLMVQTKPPETDVTKNVSNNFTSNAGNGN

Query:  RGRGGGRGGYNNNRGGRSW----------NNRNRP---QCQLCGKFNHTAPKCFFRYAPSGHQNNS
          RG  R   NNN    SW          N + +P   +CQ+C    H+A +C     P  HQ  S
Subjt:  RGRGGGRGGYNNNRGGRSW----------NNRNRP---QCQLCGKFNHTAPKCFFRYAPSGHQNNS

Arabidopsis top hits

e value

%identity

Alignment

AT1G34070.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

1.3e-05

27.11

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Query:  MKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKL----TSTEGSL
        +++ ++L+T   G M + +Y+ K+++  D+L  V  PV   + ++++L+GL  +++++++VI  +    S  +  ++L  +E+R++  +    T  + S 
Subjt:  MKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKL----TSTEGSL

Query:  PSANLMVQTKPPETDVTKNVSNNFTSNAGN--GNRGRGGGRGGYNNNRGGR-------SWNNRNRP
         S  L     PP T        NF  + GN  G RGRG G   +   RGGR       ++N+ NRP
Subjt:  PSANLMVQTKPPETDVTKNVSNNFTSNAGN--GNRGRGGGRGGYNNNRGGR-------SWNNRNRP

AT5G48050.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162)

3.2e-07

26.99

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Query:  MKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRI--ESKLTSTEGSLPS
        ++ + +L+T     +S+ EY  K++  +D L  V  P+     ++ +L+GL  +Y+ +++VI  K+   S  E  S+LL +E+R+  +SK + +  + PS
Subjt:  MKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRI--ESKLTSTEGSLPS

Query:  ANLMVQTKPPETDVTKNVSNNFTSNAGNG-----NRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRYAPSGHQNNSGSFPPNFNQFNR
         + ++ T P + +      +N  SN G G     NRG G   G YNNN   R     N+P   + G      P+  + Y   G         P F  F++
Subjt:  ANLMVQTKPPETDVTKNVSNNFTSNAGNG-----NRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRYAPSGHQNNSGSFPPNFNQFNR

Query:  SPSFPQMSAMVATPDLNHDTNHTDIL
           FPQ   +  +   +H  + T IL
Subjt:  SPSFPQMSAMVATPDLNHDTNHTDIL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATGAAAATCAAGACCAAACTCCAAACTATACAAAAGGGAGGTATGTCCTTAAAAGAATACTTCTCTAAAATTCAACAATATACTGATGCTCTTGCTGCTGTGGGAAA
ACCGGTGGATATCGAGGATCATATTTTGTTTATTTTATCTGGACTGGGCTCTGAGTATGAATCCATGGTCTCGGTAATCTCTGCTAAAGCTGGACCTCAATCTGTTCATG
AGGTTATGTCATTGCTATTAACGCAAGAAAATCGTATTGAAAGTAAGCTCACATCTACGGAAGGCTCTCTTCCATCTGCGAATCTGATGGTTCAAACAAAACCCCCTGAG
ACTGATGTTACAAAAAATGTGTCTAACAATTTTACTTCCAATGCTGGTAATGGAAACAGGGGAAGAGGTGGAGGCCGAGGAGGTTATAACAATAACAGAGGTGGTCGGTC
GTGGAACAATAGGAACAGACCCCAATGTCAACTCTGCGGAAAGTTCAATCACACAGCACCAAAATGTTTCTTCCGATATGCACCCTCTGGCCATCAAAATAACTCAGGTT
CGTTCCCTCCCAACTTCAACCAATTTAACCGTTCTCCTTCATTTCCTCAGATGTCTGCAATGGTCGCCACCCCTGACTTGAATCATGATACCAATCACACTGATATTCTC
TAA

mRNA sequence

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Protein sequence

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MMKIKTKLQTIQKGGMSLKEYFSKIQQYTDALAAVGKPVDIEDHILFILSGLGSEYESMVSVISAKAGPQSVHEVMSLLLTQENRIESKLTSTEGSLPSANLMVQTKPPE
TDVTKNVSNNFTSNAGNGNRGRGGGRGGYNNNRGGRSWNNRNRPQCQLCGKFNHTAPKCFFRYAPSGHQNNSGSFPPNFNQFNRSPSFPQMSAMVATPDLNHDTNHTDIL

Lag0029520 (gene) of Sponge gourd (AG-4) v1 genome