; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0029616 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0029616
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptiontRNA pseudouridine(38/39) synthase
Genome locationchr8:40601991..40604734
RNA-Seq ExpressionLag0029616
SyntenyLag0029616
Gene Ontology termsGO:0001522 - pseudouridine synthesis (biological process)
GO:0008033 - tRNA processing (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0106029 - tRNA pseudouridine synthase activity (molecular function)
InterPro domainsIPR001406 - Pseudouridine synthase I, TruA
IPR020095 - Pseudouridine synthase I, TruA, C-terminal
IPR020097 - Pseudouridine synthase I, TruA, alpha/beta domain
IPR020103 - Pseudouridine synthase, catalytic domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578858.1 putative F-actin-capping protein subunit beta, partial [Cucurbita argyrosperma subsp. sororia]2.3e-7387.26Show/hide
Query:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL
        +MEG  LWAFNIEGSAFLWHQVRCMVA+VFMVGQGLEDPDV+DILLDP RTPRKPQYVMASENPLVLHSCEFEGVKFRCS+DAGEALQ HLTNEIRTYEL
Subjt:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL

Query:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASR
        QAAIFKEALLSCLPITND++  +NRK+KKK CHV LLSRPTEPSYEERRAK +S+S+
Subjt:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASR

XP_022992675.1 tRNA pseudouridine(38/39) synthase isoform X1 [Cucurbita maxima]1.3e-7387.34Show/hide
Query:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL
        +MEG  LWAFNIEGSAFLWHQVRCMVA+VFMVGQGLEDPDV+DILLDP RTPRKPQYVMASENPLVLHSCEFEGVKFRCS+DAGEALQ HLTNEIRTYEL
Subjt:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL

Query:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS
        QAAIFKEALLSCLPITND++  +NRK+KKK CHV LLSRPTEPSYEERRAK +S+S+S
Subjt:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS

XP_022992677.1 tRNA pseudouridine(38/39) synthase isoform X2 [Cucurbita maxima]1.3e-7387.34Show/hide
Query:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL
        +MEG  LWAFNIEGSAFLWHQVRCMVA+VFMVGQGLEDPDV+DILLDP RTPRKPQYVMASENPLVLHSCEFEGVKFRCS+DAGEALQ HLTNEIRTYEL
Subjt:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL

Query:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS
        QAAIFKEALLSCLPITND++  +NRK+KKK CHV LLSRPTEPSYEERRAK +S+S+S
Subjt:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS

XP_022992679.1 tRNA pseudouridine(38/39) synthase isoform X3 [Cucurbita maxima]1.3e-7387.34Show/hide
Query:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL
        +MEG  LWAFNIEGSAFLWHQVRCMVA+VFMVGQGLEDPDV+DILLDP RTPRKPQYVMASENPLVLHSCEFEGVKFRCS+DAGEALQ HLTNEIRTYEL
Subjt:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL

Query:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS
        QAAIFKEALLSCLPITND++  +NRK+KKK CHV LLSRPTEPSYEERRAK +S+S+S
Subjt:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS

XP_038884605.1 tRNA pseudouridine(38/39) synthase isoform X2 [Benincasa hispida]6.7e-7388.61Show/hide
Query:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL
        +MEG  LWAFNIEGSAFLWHQVRCMVA+VFMVGQGLEDPDV+DILL+P RTPRKPQYVMASENPLVLHSCEFE VKFRCSSDAGEALQ HL NEIRTYEL
Subjt:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL

Query:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS
        QAAIFKEALLSCLPITND +S + RKLKKKNCHVALLSRPTEPSYEERRAK DS S S
Subjt:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS

TrEMBL top hitse value%identityAlignment
A0A6J1FEX0 tRNA pseudouridine(38/39) synthase isoform X17.2e-7386.08Show/hide
Query:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL
        +MEG  LWAFNIEGSAFLWHQVRCMVA+VFMVGQGLEDPDV+DILLDP RTPRKPQYVMASENPLVLHSCEFEGVKFRCS+DAGEALQ HL+NEIRTYEL
Subjt:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL

Query:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS
        QAAIFKEALLSCLPIT+D++  +NRK+KKK CHV LLSRPTEPSYEERRAK +S+S+S
Subjt:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS

A0A6J1FKL6 tRNA pseudouridine(38/39) synthase isoform X27.2e-7386.08Show/hide
Query:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL
        +MEG  LWAFNIEGSAFLWHQVRCMVA+VFMVGQGLEDPDV+DILLDP RTPRKPQYVMASENPLVLHSCEFEGVKFRCS+DAGEALQ HL+NEIRTYEL
Subjt:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL

Query:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS
        QAAIFKEALLSCLPIT+D++  +NRK+KKK CHV LLSRPTEPSYEERRAK +S+S+S
Subjt:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS

A0A6J1JQK1 tRNA pseudouridine(38/39) synthase isoform X26.5e-7487.34Show/hide
Query:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL
        +MEG  LWAFNIEGSAFLWHQVRCMVA+VFMVGQGLEDPDV+DILLDP RTPRKPQYVMASENPLVLHSCEFEGVKFRCS+DAGEALQ HLTNEIRTYEL
Subjt:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL

Query:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS
        QAAIFKEALLSCLPITND++  +NRK+KKK CHV LLSRPTEPSYEERRAK +S+S+S
Subjt:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS

A0A6J1JWD4 tRNA pseudouridine(38/39) synthase isoform X16.5e-7487.34Show/hide
Query:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL
        +MEG  LWAFNIEGSAFLWHQVRCMVA+VFMVGQGLEDPDV+DILLDP RTPRKPQYVMASENPLVLHSCEFEGVKFRCS+DAGEALQ HLTNEIRTYEL
Subjt:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL

Query:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS
        QAAIFKEALLSCLPITND++  +NRK+KKK CHV LLSRPTEPSYEERRAK +S+S+S
Subjt:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS

A0A6J1JWD9 tRNA pseudouridine(38/39) synthase isoform X36.5e-7487.34Show/hide
Query:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL
        +MEG  LWAFNIEGSAFLWHQVRCMVA+VFMVGQGLEDPDV+DILLDP RTPRKPQYVMASENPLVLHSCEFEGVKFRCS+DAGEALQ HLTNEIRTYEL
Subjt:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYEL

Query:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS
        QAAIFKEALLSCLPITND++  +NRK+KKK CHV LLSRPTEPSYEERRAK +S+S+S
Subjt:  QAAIFKEALLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS

SwissProt top hitse value%identityAlignment
P31115 tRNA pseudouridine(38/39) synthase1.9e-1742.86Show/hide
Query:  WAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFR-CSSDAGEALQSHLTNEIRT--YELQAA-
        + F++ GSAFLWHQVRCM+AI+F+VGQ LE P+++  L D  +TP++P Y MA++ PL+L+ C+F  + ++  + D  +A++     E  T  YEL+AA 
Subjt:  WAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFR-CSSDAGEALQSHLTNEIRT--YELQAA-

Query:  --IFKEALLSCLPITNDKN
          IFK+     LP  N  N
Subjt:  --IFKEALLSCLPITNDKN

Q3SX07 tRNA pseudouridine(38/39) synthase2.3e-2050.56Show/hide
Query:  EGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHL
        E +QL  F + G AFL+HQVRCM+A++F++GQG+E P+VID LL+  + P+KPQY MA E PLVL+ C+FE +K+    +  E   +HL
Subjt:  EGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHL

Q9BZE2 tRNA pseudouridine(38/39) synthase6.2e-2152.81Show/hide
Query:  EGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHL
        E +QL  F + G AFL+HQVRCM+AI+F++GQG+E P++ID LL+  + P+KPQY MA E PLVL+ C+FE VK+    +A E   +HL
Subjt:  EGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHL

Q9JI38 tRNA pseudouridine(38/39) synthase4.0e-2037.78Show/hide
Query:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHL-----TNEI
        + E +QL  F + G AFL+HQVRCM+AI+F++GQG+E P++ID LL+  + P+KPQY MA E PLVL+ C+FE  K+    +  E   +HL      + +
Subjt:  KMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHL-----TNEI

Query:  RTYELQAAI--FKEALLSCLPITNDKNSLENRKLK
        +T+ L + +      +++C   T    + E R ++
Subjt:  RTYELQAAI--FKEALLSCLPITNDKNSLENRKLK

Q9UTB3 Putative tRNA pseudouridine synthase C25B8.053.7e-1850.65Show/hide
Query:  LWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDA
        L+AF+++G+AFLWHQVRCM+AI+F++GQ LE   +I+ LLD  + P KP Y MASE PL+L+ C+F+ +++   +D+
Subjt:  LWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDA

Arabidopsis top hitse value%identityAlignment
AT1G34150.1 Pseudouridine synthase family protein7.9e-4859.74Show/hide
Query:  EGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYELQA
        EG QL  F + GSAFLWHQ+RCMVA++FM+GQG+E  DVID LLD  +TPRKPQY++ASE PLVL +CEFE V F CS  A E+L+SH  NE  TY+L++
Subjt:  EGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYELQA

Query:  AIFKEALLSCLPITNDKNSLEN-----RKLKKKNCHVALLSRPTEPSYEERRAK
         I++EAL +CLP++N+ ++ E+      K KK+  HV LLSRPTEPSYEER AK
Subjt:  AIFKEALLSCLPITNDKNSLEN-----RKLKKKNCHVALLSRPTEPSYEERRAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACAAGATGGAGGGCTATCAATTATGGGCATTCAACATAGAAGGCAGTGCTTTCCTCTGGCATCAGGTCCGCTGCATGGTCGCTATAGTATTCATGGTGGGGCAAGG
TCTTGAAGATCCTGATGTCATAGATATTCTACTGGATCCATCAAGAACACCAAGGAAGCCTCAATACGTTATGGCTTCAGAAAATCCTCTTGTCCTTCATTCTTGTGAAT
TTGAAGGTGTCAAATTTAGGTGTTCATCAGATGCTGGAGAAGCTCTACAGTCACATTTAACAAATGAAATCCGAACATATGAGCTCCAAGCTGCAATTTTCAAAGAAGCT
CTTCTGAGCTGTTTGCCAATCACAAATGATAAAAACTCCTTGGAGAACAGGAAGTTGAAGAAGAAAAATTGTCATGTTGCCCTATTGTCAAGACCAACTGAACCTTCCTA
TGAAGAGCGGCGTGCGAAGTTTGATTCAGCCTCAAGAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCACAAGATGGAGGGCTATCAATTATGGGCATTCAACATAGAAGGCAGTGCTTTCCTCTGGCATCAGGTCCGCTGCATGGTCGCTATAGTATTCATGGTGGGGCAAGG
TCTTGAAGATCCTGATGTCATAGATATTCTACTGGATCCATCAAGAACACCAAGGAAGCCTCAATACGTTATGGCTTCAGAAAATCCTCTTGTCCTTCATTCTTGTGAAT
TTGAAGGTGTCAAATTTAGGTGTTCATCAGATGCTGGAGAAGCTCTACAGTCACATTTAACAAATGAAATCCGAACATATGAGCTCCAAGCTGCAATTTTCAAAGAAGCT
CTTCTGAGCTGTTTGCCAATCACAAATGATAAAAACTCCTTGGAGAACAGGAAGTTGAAGAAGAAAAATTGTCATGTTGCCCTATTGTCAAGACCAACTGAACCTTCCTA
TGAAGAGCGGCGTGCGAAGTTTGATTCAGCCTCAAGAAGTTGA
Protein sequenceShow/hide protein sequence
MHKMEGYQLWAFNIEGSAFLWHQVRCMVAIVFMVGQGLEDPDVIDILLDPSRTPRKPQYVMASENPLVLHSCEFEGVKFRCSSDAGEALQSHLTNEIRTYELQAAIFKEA
LLSCLPITNDKNSLENRKLKKKNCHVALLSRPTEPSYEERRAKFDSASRS