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Lag0029660 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0029660
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr8:40952428..40952973
RNA-Seq ExpressionLag0029660
SyntenyLag0029660
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4309574.1 unnamed protein product [Prunus armeniaca]1.4e-1331.68Show/hide
Query:  WNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEAL
        W P   G++K+  D A  S     G+  + RN KGE MAA V+ +     A   EL A  EGL+ A  +G    ++E D +  I  +    +       L
Subjt:  WNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEAL

Query:  VEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPSWLCKWVEFDQVA
        +E + S++  FR +   + PR  N VAH +AQF        TW+   P WL   +E D +A
Subjt:  VEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPSWLCKWVEFDQVA

OMO99423.1 hypothetical protein CCACVL1_03816 [Corchorus capsularis]5.5e-1534.59Show/hide
Query:  WNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEAL
        W P   GV K++TDAA   +   TG+ ++ R+S+G +++  V             ++AI  G+ MA++ G S+ +I SDC +AI  +N+  +  WE + L
Subjt:  WNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEAL

Query:  VEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQF
        +E IW +  FF  I+F ++ R  NY AH +A+F
Subjt:  VEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQF

XP_006491472.1 uncharacterized protein LOC102626455 [Citrus sinensis]4.2e-1530.87Show/hide
Query:  WNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEAL
        W P  + V KL+ DAA S+   K G+ +I R+++G+I+A  ++      +  L E  AI  GL++A  +  S +++ESDCK  ++ LN       E+  +
Subjt:  WNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEAL

Query:  VEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPS
        +  +      F+ + F +IPR  N  AH +A+F       + WV  FP+
Subjt:  VEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPS

XP_008238309.1 PREDICTED: uncharacterized protein LOC103336955 [Prunus mume]2.1e-1431.06Show/hide
Query:  WNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEAL
        W P   G++K++ D A  S     G+  + RN KGE MAA V+ +     A   EL A  EGL+ A  +G +  ++E D +  I  +    +       L
Subjt:  WNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEAL

Query:  VEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPSWLCKWVEFDQVA
        +E + +++  FR +   + PR  N VAH +AQF        TW+   P WL   +E D +A
Subjt:  VEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPSWLCKWVEFDQVA

XP_027155242.1 uncharacterized protein LOC113755435 [Coffea eugenioides]7.9e-1431.65Show/hide
Query:  WNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEAL
        W P   GV K++TDAA  +     G+  I R+S G I+ A          A L +  A+ +GL MA+ +G  +I +++DCK AI+ + K   V   +  +
Subjt:  WNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEAL

Query:  VEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPSWLCKWVEFD
        +E I  +   F+D +F ++ R+ N  AH++AQF   + +   W ++FP WL + ++ D
Subjt:  VEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPSWLCKWVEFD

TrEMBL top hitse value%identityAlignment
A0A1R3JX53 RNase H domain-containing protein2.7e-1534.59Show/hide
Query:  WNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEAL
        W P   GV K++TDAA   +   TG+ ++ R+S+G +++  V             ++AI  G+ MA++ G S+ +I SDC +AI  +N+  +  WE + L
Subjt:  WNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEAL

Query:  VEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQF
        +E IW +  FF  I+F ++ R  NY AH +A+F
Subjt:  VEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQF

A0A251PKK0 RNase H domain-containing protein4.2e-1332.28Show/hide
Query:  LFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEA-LVE
        L  G +KL+ DAA        GI ++ RN KGE+MAA    +     +   E+ A   G+K A+  GCS I+IESD +  +  + K+ +  W  +  L+ 
Subjt:  LFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEA-LVE

Query:  PIWSIVPFFRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPSWLCKWVEFDQV
         I   +  F D+   Y PR  N VAH +A+         TW+   P WL   +  D V
Subjt:  PIWSIVPFFRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPSWLCKWVEFDQV

A0A314LF75 RNase H domain-containing protein2.5e-1332.87Show/hide
Query:  LSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEALVEPIWSIVPF
        L  DA       K  IC +  +SKG ++ A    +    KA + E +A  + ++ A   G  KI I SD K  +  L + ++  W+VE   E IW++   
Subjt:  LSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEALVEPIWSIVPF

Query:  FRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPSWLCK
           +SF YIPR  + VAH +AQF     +  +W   FPSW+ K
Subjt:  FRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPSWLCK

A0A5E4FZN9 PREDICTED: retrotransposon5.5e-1330.54Show/hide
Query:  SASLLPKGCWNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEI
        S+   P   W P   G++K++ D A  S     G+  + RN+ GE MAA V+ +     A   EL A  EGL+ A  +G +  V+E D +  I  +    
Subjt:  SASLLPKGCWNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEI

Query:  QVWWEVEALVEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPSWLCKWVEFD
        +       L+E +  ++  FR +   + PR+ N VAH +AQF        TW+   P WL   +E D
Subjt:  QVWWEVEALVEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPSWLCKWVEFD

A0A6J5XES2 Uncharacterized protein6.6e-1431.68Show/hide
Query:  WNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEAL
        W P   G++K+  D A  S     G+  + RN KGE MAA V+ +     A   EL A  EGL+ A  +G    ++E D +  I  +    +       L
Subjt:  WNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEAL

Query:  VEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPSWLCKWVEFDQVA
        +E + S++  FR +   + PR  N VAH +AQF        TW+   P WL   +E D +A
Subjt:  VEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPSWLCKWVEFDQVA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G09490.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.4e-0529.75Show/hide
Query:  TDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHL-GELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEALVEPIWSIVPFF
        TDAA        G   + RN   E+ A   Q    +++  L  E  A+F  L+ A+S+G +K+ + SD +  I  +  E     E   ++  I ++   F
Subjt:  TDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHL-GELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKEIQVWWEVEALVEPIWSIVPFF

Query:  RDISFCYIPRNRNYVAHEIAQ
         D+SF ++PR+ N VA E+A+
Subjt:  RDISFCYIPRNRNYVAHEIAQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAAGTCAAAACAACAGATCGTCATGTGCTAGCGCTTCGTTGTTGCCCAAAGGGTGTTGGAATCCTCTTTTCAGAGGAGTCTGGAAATTGAGCACTGATGCTGCTTG
TTCTTCTTCTCCTCCAAAAACGGGAATATGCTCGATTTGTAGAAACTCGAAAGGCGAAATAATGGCGGCGGCTGTCCAGGGTGTGGACATTGATATGAAAGCCCATTTAG
GAGAACTTTGGGCTATTTTTGAGGGTCTTAAAATGGCTAAGTCTTTGGGTTGCTCTAAAATCGTTATTGAGTCTGATTGCAAGTTAGCCATCCAGTTTCTTAATAAGGAG
ATCCAAGTTTGGTGGGAAGTTGAAGCCCTAGTTGAGCCTATTTGGAGCATAGTTCCTTTTTTTAGGGATATTTCTTTTTGCTATATTCCCAGAAATCGCAATTATGTAGC
TCATGAAATTGCCCAATTTGGTAAAGCTTATGGCTACCATGAGACTTGGGTTAGGAATTTCCCGAGTTGGCTATGTAAATGGGTCGAATTTGACCAAGTGGCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGAAGTCAAAACAACAGATCGTCATGTGCTAGCGCTTCGTTGTTGCCCAAAGGGTGTTGGAATCCTCTTTTCAGAGGAGTCTGGAAATTGAGCACTGATGCTGCTTG
TTCTTCTTCTCCTCCAAAAACGGGAATATGCTCGATTTGTAGAAACTCGAAAGGCGAAATAATGGCGGCGGCTGTCCAGGGTGTGGACATTGATATGAAAGCCCATTTAG
GAGAACTTTGGGCTATTTTTGAGGGTCTTAAAATGGCTAAGTCTTTGGGTTGCTCTAAAATCGTTATTGAGTCTGATTGCAAGTTAGCCATCCAGTTTCTTAATAAGGAG
ATCCAAGTTTGGTGGGAAGTTGAAGCCCTAGTTGAGCCTATTTGGAGCATAGTTCCTTTTTTTAGGGATATTTCTTTTTGCTATATTCCCAGAAATCGCAATTATGTAGC
TCATGAAATTGCCCAATTTGGTAAAGCTTATGGCTACCATGAGACTTGGGTTAGGAATTTCCCGAGTTGGCTATGTAAATGGGTCGAATTTGACCAAGTGGCGTAA
Protein sequenceShow/hide protein sequence
MRSQNNRSSCASASLLPKGCWNPLFRGVWKLSTDAACSSSPPKTGICSICRNSKGEIMAAAVQGVDIDMKAHLGELWAIFEGLKMAKSLGCSKIVIESDCKLAIQFLNKE
IQVWWEVEALVEPIWSIVPFFRDISFCYIPRNRNYVAHEIAQFGKAYGYHETWVRNFPSWLCKWVEFDQVA