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Lag0029687 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0029687
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr8:41184408..41187987
RNA-Seq ExpressionLag0029687
SyntenyLag0029687
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045287.1 uncharacterized protein E6C27_scaffold316G00450 [Cucumis melo var. makuwa]3.6e-2042.19Show/hide
Query:  LSPSQIPNEFSLLVETCGLQLCKISSPSPKETKQSKI--DLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVC
        L  S +  E  + ++T G++ CK          +SKI      IK+LWS  +IG  F+E+ G+SGG+L MWDES++SV E +KG + LS+KC T+C K C
Subjt:  LSPSQIPNEFSLLVETCGLQLCKISSPSPKETKQSKI--DLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVC

Query:  WVPNVYGPNDYKERRFLWPELRSLSYYC
        W+ NVYGP  ++ER+ +W EL   +  C
Subjt:  WVPNVYGPNDYKERRFLWPELRSLSYYC

KAA0063088.1 uncharacterized protein E6C27_scaffold623G00050 [Cucumis melo var. makuwa]4.6e-3961.86Show/hide
Query:  KETKQSKIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWVPNVYGPNDYKERRFLWPELRSLSYYCTDP
        +E+K+ + D+ FIKSLWSSK+ GW   E +G SGG+L +WD SKL V+E LKGGY+LSI  +T+C K CW+ NVYGPND+KERR +WPEL SLS YCT  
Subjt:  KETKQSKIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWVPNVYGPNDYKERRFLWPELRSLSYYCTDP

Query:  WCIGGNFNITRWVHERSP
        WCI G+ NI RW HER P
Subjt:  WCIGGNFNITRWVHERSP

TYJ98683.1 hypothetical protein E5676_scaffold429G00120 [Cucumis melo var. makuwa]5.6e-3762.83Show/hide
Query:  KIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWVPNVYGPNDYKERRFLWPELRSLSYYCTDPWCIGGN
        +ID+  IKSLWSSK+IGW  VE++G+ GG+L MWD SK+ V+E LKGGY+LSI  +T C K CW+ NVYGP DY+ERRF+W  L SLS YCT  WCIGG 
Subjt:  KIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWVPNVYGPNDYKERRFLWPELRSLSYYCTDPWCIGGN

Query:  FNITRWVHERSPM
         NITRW HE  P+
Subjt:  FNITRWVHERSPM

XP_031739979.1 uncharacterized protein LOC116403332 [Cucumis sativus]1.1e-2140.17Show/hide
Query:  KETKQSKIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWVPNVYGPNDYKERRFLWPELRSLSYYCTDP
        +++K S ++   +KS+WSS  +GW  +EAYG SGG+LI+W E  ++V++ ++G +++SI          W+  VYGP+ Y+ R   W EL SL   C + 
Subjt:  KETKQSKIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWVPNVYGPNDYKERRFLWPELRSLSYYCTDP

Query:  WCIGGNFNITRWVHERS
        WC+GG+FN+ RW++E+S
Subjt:  WCIGGNFNITRWVHERS

XP_038876676.1 uncharacterized protein LOC120069076 [Benincasa hispida]7.6e-3459.66Show/hide
Query:  KETKQSKIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWVPNVYGPNDYKERRFLWPELRSLSYYCTDP
        +ETK+ +I+  FIKSLWSSKE+G  FVEA GKSGGLL +WD+SK+ V    K  ++LSIKC T+  K+CW+ NVYGP DY+ERR LW EL SL+    DP
Subjt:  KETKQSKIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWVPNVYGPNDYKERRFLWPELRSLSYYCTDP

Query:  WCIGGNFNITRWVHERSPM
        WCIGG+FN  R  HER P+
Subjt:  WCIGGNFNITRWVHERSPM

TrEMBL top hitse value%identityAlignment
A0A1U8B190 uncharacterized protein LOC1046062238.7e-2036.51Show/hide
Query:  KETKQSKIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWV-PNVYGPNDYKERRFLWPELRSLSYYCTD
        +E+K   +D ++++S W S+ +GW+   ++G SGG++ +W E  + V+E L G +++SIKC  +     WV  NVYGPN Y+ER  +W EL ++      
Subjt:  KETKQSKIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWV-PNVYGPNDYKERRFLWPELRSLSYYCTD

Query:  PWCIGGNFNITRWVHERSPMHAYLKT
        PWC+ G+FN+ R+  E S     + T
Subjt:  PWCIGGNFNITRWVHERSPMHAYLKT

A0A5A7TTX5 Uncharacterized protein1.8e-2042.19Show/hide
Query:  LSPSQIPNEFSLLVETCGLQLCKISSPSPKETKQSKI--DLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVC
        L  S +  E  + ++T G++ CK          +SKI      IK+LWS  +IG  F+E+ G+SGG+L MWDES++SV E +KG + LS+KC T+C K C
Subjt:  LSPSQIPNEFSLLVETCGLQLCKISSPSPKETKQSKI--DLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVC

Query:  WVPNVYGPNDYKERRFLWPELRSLSYYC
        W+ NVYGP  ++ER+ +W EL   +  C
Subjt:  WVPNVYGPNDYKERRFLWPELRSLSYYC

A0A5A7V639 Uncharacterized protein2.2e-3961.86Show/hide
Query:  KETKQSKIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWVPNVYGPNDYKERRFLWPELRSLSYYCTDP
        +E+K+ + D+ FIKSLWSSK+ GW   E +G SGG+L +WD SKL V+E LKGGY+LSI  +T+C K CW+ NVYGPND+KERR +WPEL SLS YCT  
Subjt:  KETKQSKIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWVPNVYGPNDYKERRFLWPELRSLSYYCTDP

Query:  WCIGGNFNITRWVHERSP
        WCI G+ NI RW HER P
Subjt:  WCIGGNFNITRWVHERSP

A0A5D3BHE3 Uncharacterized protein2.7e-3762.83Show/hide
Query:  KIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWVPNVYGPNDYKERRFLWPELRSLSYYCTDPWCIGGN
        +ID+  IKSLWSSK+IGW  VE++G+ GG+L MWD SK+ V+E LKGGY+LSI  +T C K CW+ NVYGP DY+ERRF+W  L SLS YCT  WCIGG 
Subjt:  KIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWVPNVYGPNDYKERRFLWPELRSLSYYCTDPWCIGGN

Query:  FNITRWVHERSPM
         NITRW HE  P+
Subjt:  FNITRWVHERSPM

A0A803P8A0 Uncharacterized protein1.5e-1940.52Show/hide
Query:  KETKQSKIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWVPNVYGPNDYKERRFLWPELRSLSYYCTDP
        +E K++ +D +FI S+W S+   W  + A G+SGG L++WD   +SVL+ L G +++S+       +  W   VYGP  YK R   W EL  LS  C + 
Subjt:  KETKQSKIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWVPNVYGPNDYKERRFLWPELRSLSYYCTDP

Query:  WCIGGNFNITRWVHER
        WC+GG+FN+TR V E+
Subjt:  WCIGGNFNITRWVHER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCATAGAATCCAAATGTTTGAGAAAGCAACCTTATCCAAACAAAACTCCTCCGTTGAATAAAGGACCACTTACTGCCTCTCAAGGGGTGAAAAATCAATTTGTCAA
AGGAATTGTTTGTTCTTCCAACCCTAAAGTTCATTCTTCTATAGATTCTGATGATGAGTCTTCGGTTAGTGTGAGTAGTGATGATTCTGGGTCTTTGATTGCTGAAGAAG
ATTGTGTTGGACTCCTCCAAAATGATCAATTTGATGAGTTTTTGGCTTCTTTTTTTCCAGGGGAGGATTTTGGTTTTGGCAATCAGATTCAAGATACCTTGTTGTCTCCT
TCTCAAATCCCTAATGAGTTCTCTTTACTAGTGGAAACTTGTGGACTTCAATTGTGCAAGATTTCATCTCCATCACCTAAAGAAACAAAACAGTCGAAAATTGATTTAAA
ATTCATTAAATCTTTGTGGAGTTCAAAGGAAATTGGATGGACTTTTGTGGAAGCTTATGGGAAATCAGGAGGTCTTCTTATTATGTGGGATGAAAGCAAATTATCAGTGC
TGGAATTCTTAAAGGGTGGTTATACTCTTTCAATTAAATGTCTTACTCTTTGTATAAAAGTTTGTTGGGTCCCCAATGTTTATGGTCCAAATGACTACAAGGAAAGGAGA
TTCTTATGGCCTGAATTGCGTTCCCTCTCTTACTATTGCACGGATCCATGGTGTATTGGTGGAAACTTTAATATTACTCGATGGGTTCATGAGAGATCTCCTATGCATGC
TTATTTAAAGACTTATTCTTGGAAAAAAGGGTCTCAAAGTCCAGCTGTCTCAGCAGATCCTAGGAGGTTTAATACTGGAACAACTTTTGTATTCACCGGCCAAATAGCCC
ATGGATATTCTGTTTCAGCAACTATGAAGTCGGTGGAAGGTTGGCCGGAGAGTTTTGGTAGGTTGCTCAAGCTTCTGGATGTTTCTTCAGTTACTATATTTGGAAAGTTT
CAGCCATTTCTTGGATACTCCATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCATAGAATCCAAATGTTTGAGAAAGCAACCTTATCCAAACAAAACTCCTCCGTTGAATAAAGGACCACTTACTGCCTCTCAAGGGGTGAAAAATCAATTTGTCAA
AGGAATTGTTTGTTCTTCCAACCCTAAAGTTCATTCTTCTATAGATTCTGATGATGAGTCTTCGGTTAGTGTGAGTAGTGATGATTCTGGGTCTTTGATTGCTGAAGAAG
ATTGTGTTGGACTCCTCCAAAATGATCAATTTGATGAGTTTTTGGCTTCTTTTTTTCCAGGGGAGGATTTTGGTTTTGGCAATCAGATTCAAGATACCTTGTTGTCTCCT
TCTCAAATCCCTAATGAGTTCTCTTTACTAGTGGAAACTTGTGGACTTCAATTGTGCAAGATTTCATCTCCATCACCTAAAGAAACAAAACAGTCGAAAATTGATTTAAA
ATTCATTAAATCTTTGTGGAGTTCAAAGGAAATTGGATGGACTTTTGTGGAAGCTTATGGGAAATCAGGAGGTCTTCTTATTATGTGGGATGAAAGCAAATTATCAGTGC
TGGAATTCTTAAAGGGTGGTTATACTCTTTCAATTAAATGTCTTACTCTTTGTATAAAAGTTTGTTGGGTCCCCAATGTTTATGGTCCAAATGACTACAAGGAAAGGAGA
TTCTTATGGCCTGAATTGCGTTCCCTCTCTTACTATTGCACGGATCCATGGTGTATTGGTGGAAACTTTAATATTACTCGATGGGTTCATGAGAGATCTCCTATGCATGC
TTATTTAAAGACTTATTCTTGGAAAAAAGGGTCTCAAAGTCCAGCTGTCTCAGCAGATCCTAGGAGGTTTAATACTGGAACAACTTTTGTATTCACCGGCCAAATAGCCC
ATGGATATTCTGTTTCAGCAACTATGAAGTCGGTGGAAGGTTGGCCGGAGAGTTTTGGTAGGTTGCTCAAGCTTCTGGATGTTTCTTCAGTTACTATATTTGGAAAGTTT
CAGCCATTTCTTGGATACTCCATCTGA
Protein sequenceShow/hide protein sequence
MSIESKCLRKQPYPNKTPPLNKGPLTASQGVKNQFVKGIVCSSNPKVHSSIDSDDESSVSVSSDDSGSLIAEEDCVGLLQNDQFDEFLASFFPGEDFGFGNQIQDTLLSP
SQIPNEFSLLVETCGLQLCKISSPSPKETKQSKIDLKFIKSLWSSKEIGWTFVEAYGKSGGLLIMWDESKLSVLEFLKGGYTLSIKCLTLCIKVCWVPNVYGPNDYKERR
FLWPELRSLSYYCTDPWCIGGNFNITRWVHERSPMHAYLKTYSWKKGSQSPAVSADPRRFNTGTTFVFTGQIAHGYSVSATMKSVEGWPESFGRLLKLLDVSSVTIFGKF
QPFLGYSI