; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0029815 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0029815
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTranscription initiation factor IIF subunit beta
Genome locationchr8:42369909..42375366
RNA-Seq ExpressionLag0029815
SyntenyLag0029815
Gene Ontology termsGO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0005674 - transcription factor TFIIF complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR003196 - Transcription initiation factor IIF, beta subunit
IPR011039 - Transcription Factor IIF, Rap30/Rap74, interaction
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily
IPR040450 - TFIIF beta subunit, HTH domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004143805.1 general transcription factor IIF subunit 2 isoform X3 [Cucumis sativus]4.0e-13080.32Show/hide
Query:  MDVDDKSTDRFSSRKLQSNAN-VVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEI
        MDVD KS DR +SRK Q+N N +VVG DF+ETNKADRAMWLLKCPQ VTRALSNS D PSR VAKVIVSVDPLQSNDDDDSSSTE               
Subjt:  MDVDDKSTDRFSSRKLQSNAN-VVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEI

Query:  GKGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRP
                FTMEL+ TDSGNALRSYSLNMSTDFIPMSVFSES+QGKFT+EGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRP
Subjt:  GKGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRP

Query:  MPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYE
        MPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPE               QYMKEILKDLCVYNNKGVHQGTYE
Subjt:  MPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYE

Query:  LKPEYKESGEETKPR
        LKPEY+ES E+TKPR
Subjt:  LKPEYKESGEETKPR

XP_008465665.1 PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo]1.1e-13080.95Show/hide
Query:  MDVDDKSTDRFSSRKLQ-SNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEI
        MDVD KS DR +SRK Q +N N+VVG DF+ETNKADRAMWLLKCPQ VTRALSNS D PSR VAKVIVSVDPLQSNDDDDSSSTE               
Subjt:  MDVDDKSTDRFSSRKLQ-SNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEI

Query:  GKGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRP
                FTMEL+ TDSGNALRSY+LNMSTDFIPMSVFSES+QGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRP
Subjt:  GKGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRP

Query:  MPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYE
        MPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPE               QYMKEILKDLCVYNNKGVHQGTYE
Subjt:  MPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYE

Query:  LKPEYKESGEETKPR
        LKPEYKES EETKPR
Subjt:  LKPEYKESGEETKPR

XP_022133483.1 general transcription factor IIF subunit 2-like [Momordica charantia]4.7e-13181.33Show/hide
Query:  MDVDDKSTDRFSSRKLQSNANVV--VGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFME
        MDVDDK  DR SSRKLQ+N N V   G DF+ETNKADRAMWLLKCPQAVTRALSNS DGPSR VAKVIVSVDPLQSNDDDDSSSTE              
Subjt:  MDVDDKSTDRFSSRKLQSNANVV--VGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFME

Query:  IGKGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMR
                 FTMEL+GTDSGN+LRSYSLNMSTDFIPMSVFSES  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMR
Subjt:  IGKGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMR

Query:  PMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTY
        PMPGMDV SFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPE               QYMKEILKDLCVYNNKGVHQGTY
Subjt:  PMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTY

Query:  ELKPEYKESGEETKPR
        ELKPEYKESG+ETK R
Subjt:  ELKPEYKESGEETKPR

XP_031741396.1 general transcription factor IIF subunit 2 isoform X2 [Cucumis sativus]7.5e-12973.24Show/hide
Query:  MDVDDKSTDRFSSRKLQSNAN-VVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTE-----------DRWF
        MDVD KS DR +SRK Q+N N +VVG DF+ETNKADRAMWLLKCPQ VTRALSNS D PSR VAKVIVSVDPLQSNDDDDSSSTE           D+  
Subjt:  MDVDDKSTDRFSSRKLQSNAN-VVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTE-----------DRWF

Query:  SEHGD---QEFMEIGKG--------------------------QSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMK
          HG    ++  +  KG                          Q++ MFTMEL+ TDSGNALRSYSLNMSTDFIPMSVFSES+QGKFT+EGKILNKFDMK
Subjt:  SEHGD---QEFMEIGKG--------------------------QSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMK

Query:  PHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQP
        PHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQP
Subjt:  PHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQP

Query:  EAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR
        E               QYMKEILKDLCVYNNKGVHQGTYELKPEY+ES E+TKPR
Subjt:  EAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR

XP_038889594.1 general transcription factor IIF subunit 2-like [Benincasa hispida]1.0e-13382.75Show/hide
Query:  MDVDDKSTDRFSSRKLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEIG
        MDVD KS DR SSRKLQ N N VVG DF+ETNKADRAMWLLKCPQ VTRALSNS DGPSR VAKVIVSVDPLQSNDDDDSSSTE                
Subjt:  MDVDDKSTDRFSSRKLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEIG

Query:  KGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPM
               FTMEL+GTDSGN LRSYSLNMSTDFIPMSVFSES+QGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPM
Subjt:  KGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPM

Query:  PGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYEL
        PGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQ+YWTSKQLIQETDQPE               QYMKEILKDLCVYNNKGVHQGTYEL
Subjt:  PGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYEL

Query:  KPEYKESGEETKP
        KPEYKESGEE KP
Subjt:  KPEYKESGEETKP

TrEMBL top hitse value%identityAlignment
A0A1S3CPB8 Transcription initiation factor IIF subunit beta5.1e-13180.95Show/hide
Query:  MDVDDKSTDRFSSRKLQ-SNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEI
        MDVD KS DR +SRK Q +N N+VVG DF+ETNKADRAMWLLKCPQ VTRALSNS D PSR VAKVIVSVDPLQSNDDDDSSSTE               
Subjt:  MDVDDKSTDRFSSRKLQ-SNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEI

Query:  GKGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRP
                FTMEL+ TDSGNALRSY+LNMSTDFIPMSVFSES+QGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRP
Subjt:  GKGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRP

Query:  MPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYE
        MPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPE               QYMKEILKDLCVYNNKGVHQGTYE
Subjt:  MPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYE

Query:  LKPEYKESGEETKPR
        LKPEYKES EETKPR
Subjt:  LKPEYKESGEETKPR

A0A1S3CPE2 Transcription initiation factor IIF subunit beta4.8e-12979.44Show/hide
Query:  MDVDDKSTDRFSSRKLQ-SNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEI
        MDVD KS DR +SRK Q +N N+VVG DF+ETNKADRAMWLLKCPQ VTRALSNS D PSR VAKVIVSVDPLQSNDDDDSSSTE               
Subjt:  MDVDDKSTDRFSSRKLQ-SNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEI

Query:  GKGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQ------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVT
                FTMEL+ TDSGNALRSY+LNMSTDFIPMSVFSES+Q      GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVT
Subjt:  GKGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQ------GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVT

Query:  GGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGV
        GGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIF+LFERQ YWTSKQLIQETDQPE               QYMKEILKDLCVYNNKGV
Subjt:  GGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGV

Query:  HQGTYELKPEYKESGEETKPR
        HQGTYELKPEYKES EETKPR
Subjt:  HQGTYELKPEYKESGEETKPR

A0A6J1BZ89 Transcription initiation factor IIF subunit beta2.3e-13181.33Show/hide
Query:  MDVDDKSTDRFSSRKLQSNANVV--VGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFME
        MDVDDK  DR SSRKLQ+N N V   G DF+ETNKADRAMWLLKCPQAVTRALSNS DGPSR VAKVIVSVDPLQSNDDDDSSSTE              
Subjt:  MDVDDKSTDRFSSRKLQSNANVV--VGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFME

Query:  IGKGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMR
                 FTMEL+GTDSGN+LRSYSLNMSTDFIPMSVFSES  GKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMR
Subjt:  IGKGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMR

Query:  PMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTY
        PMPGMDV SFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPE               QYMKEILKDLCVYNNKGVHQGTY
Subjt:  PMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTY

Query:  ELKPEYKESGEETKPR
        ELKPEYKESG+ETK R
Subjt:  ELKPEYKESGEETKPR

A0A6J1HK34 Transcription initiation factor IIF subunit beta4.0e-12879.3Show/hide
Query:  MDVDDKSTDRFSSRKLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEIG
        MD DDK  DR SSRKL SN++   G DF+ETNKADRAMWLLKCPQ VTRALSNS D PSR VAKVIVSVDPLQSNDDDDSSSTE                
Subjt:  MDVDDKSTDRFSSRKLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEIG

Query:  KGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPM
               FTMEL+ TDSG ALR+YSLNMSTDFIPMSVFSES QGKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPM
Subjt:  KGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPM

Query:  PGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYEL
        PGMDVLSFGAAEKKKVVSKGSE KRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPE               QYMKEILKDLCVYNNKGVHQGTYEL
Subjt:  PGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYEL

Query:  KPEYKESGEETKPR
        KPEYKE+ EETKPR
Subjt:  KPEYKESGEETKPR

A0A6J1JIQ3 Transcription initiation factor IIF subunit beta1.4e-12879.62Show/hide
Query:  MDVDDKSTDRFSSRKLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEIG
        MD DDK  DR SSRKL SN++ V G DF+ETNKADRAMWLLKCPQ VTRALSNS D PSR VAKVIVSVDPLQSNDDDDSSSTE                
Subjt:  MDVDDKSTDRFSSRKLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEIG

Query:  KGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPM
               FTMEL+ TDSG ALR+YSLNMSTDFIPMSVFSES QGKFTVEGKILNKFDMKPHDQNL+ YGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPM
Subjt:  KGQSNLMFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPM

Query:  PGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYEL
        PGMDVLSFGAAEKKKVVSKGSE KRLRKERGELEKIIFRLFERQ YWTSKQLIQETDQPE               QYMKEILKDLCVYNNKGVHQGTYEL
Subjt:  PGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYEL

Query:  KPEYKESGEETKPR
        KPEYKE+ EETKPR
Subjt:  KPEYKESGEETKPR

SwissProt top hitse value%identityAlignment
P13984 General transcription factor IIF subunit 21.0e-1129.94Show/hide
Query:  MSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELE
        ++VF+ES+  K ++EG ++ + + +P     E Y +L R +  +S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  + 
Subjt:  MSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELE

Query:  KIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKE-SGEE
         ++F  FE+  Y+  K L+  T QP                 Y+KEILK++ V N KG+H+ T+ELKPEY+   GEE
Subjt:  KIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKE-SGEE

P41900 General transcription factor IIF subunit 21.5e-1030.36Show/hide
Query:  KFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQ
        K  +EG+I+ K + +P   N   Y KL  E   K+    R++Q ID +   + +P+      +    E+KK     +E K+ R ++  +  ++F  FE+ 
Subjt:  KFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQ

Query:  AYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETK
         Y+  K L++ T+QP +               Y+KEILKD+C YN K  H+  +ELK EY+    E K
Subjt:  AYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETK

Q01750 General transcription factor IIF subunit 21.3e-1129.21Show/hide
Query:  MSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELE
        ++VF+ES+  K ++EG ++ + + +P     E Y KL R +  +S    R  Q  D V   + +P+       +    ++K   K  + KR R ++  + 
Subjt:  MSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELE

Query:  KIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETK
         ++F  FE+  Y+  K L+  T QP                 Y+KEILK++ + N KG+H+ T+ELKPEY+    E K
Subjt:  KIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETK

Q2T9L9 General transcription factor IIF subunit 22.3e-1128.65Show/hide
Query:  MSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELE
        ++VF+ES+  K ++EG ++ + + +P     E Y +L R +  +S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  + 
Subjt:  MSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELE

Query:  KIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETK
         ++F  FE+  Y+  K L+  T QP +               Y+K+ILK++ V N KG+H+ T+ELKPEY+    E K
Subjt:  KIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETK

Q8R0A0 General transcription factor IIF subunit 26.0e-1229.21Show/hide
Query:  MSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELE
        ++VF+ES+  K ++EG ++ + + +P     E Y KL R +  +S    R  Q +D V   + +P+       +    ++K   K  + KR R ++  + 
Subjt:  MSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKGSETKRLRKERGELE

Query:  KIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETK
         ++F  FE+  Y+  K L+  T QP                 Y+KEILK++ + N KG+H+ T+ELKPEY+    E K
Subjt:  KIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETK

Arabidopsis top hitse value%identityAlignment
AT1G75510.1 Transcription initiation factor IIF, beta subunit1.3e-5744.9Show/hide
Query:  VETNKADRAMWLLKCPQAVTRALSN----------SSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEIGKGQSNLMFTMELSGTDSG
        ++  K+DR++WL+KCP  V +A             SSD P   +AK++  VDPL+     D S  E                       F M + G + G
Subjt:  VETNKADRAMWLLKCPQAVTRALSN----------SSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEIGKGQSNLMFTMELSGTDSG

Query:  NALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVV
        N  + Y+LNM TDF+PM  FS+  QG    EGK+ +KFDMKP+ + +E Y +LCRERT K+M K+RQIQVID+  G HMRPMPGM  ++S  + EK+K  
Subjt:  NALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGM-DVLSFGAAEKKKVV

Query:  S-KGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEE
          K +E KR R++RGELE I+F+LFE Q  WT KQL+QETDQP                Q++KEIL +LCVYN +G +QGTYELKPEYK+S E+
Subjt:  S-KGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEE

AT3G52270.1 Transcription initiation factor IIF, beta subunit2.7e-6847.7Show/hide
Query:  KLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSS--------DGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEIGKGQSNL
        K++ N N     + +ET  A+R+M L+K P  V  +L + S        D P R  AKVI+ VDPL   D+                             
Subjt:  KLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSS--------DGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEIGKGQSNL

Query:  MFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVL
         F MEL+  DSGN  R Y+L+MS DFIPM+VF ES+ GK +VEGKI NKFDM+PH++N+E YG+LCRERT+K M K+RQIQVID+  G HMRPMPGM ++
Subjt:  MFTMELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVL

Query:  SFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKE
           A EKKK+ ++ SE KR R++R E+E+++F LFERQ+ WT + LIQETDQPE               Q++K++LKDLC+YNNKG +QGTYELKPEYK+
Subjt:  SFGAAEKKKVVSKGSETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKE

Query:  SGEE
        + +E
Subjt:  SGEE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGTCGACGACAAATCCACCGACCGTTTCAGTTCCAGAAAACTCCAAAGCAATGCCAACGTCGTCGTCGGAGCCGACTTCGTAGAGACGAACAAGGCGGACAGAGC
AATGTGGCTCTTGAAATGCCCGCAAGCCGTAACTCGCGCCCTTTCCAATTCCTCCGATGGCCCCTCTCGTGCGGTCGCTAAGGTCATCGTTTCTGTTGACCCTCTGCAAT
CCAATGACGATGATGATTCTTCATCAACTGAGGACCGCTGGTTTTCAGAACACGGGGATCAGGAATTTATGGAGATTGGAAAAGGCCAAAGTAATTTAATGTTCACTATG
GAATTGTCTGGCACTGACTCTGGAAATGCATTAAGGTCCTACTCGTTGAACATGTCCACGGACTTCATTCCGATGTCTGTATTTTCTGAGTCAACACAAGGCAAGTTTAC
AGTCGAAGGGAAAATACTGAACAAATTTGACATGAAGCCGCATGATCAAAATCTTGAGAGGTACGGGAAACTCTGTCGCGAAAGAACTCACAAGTCTATGACCAAAAGCA
GACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCAATGCCAGGGATGGACGTGTTGTCATTTGGAGCTGCAGAGAAGAAGAAAGTGGTAAGCAAGGGA
TCGGAAACGAAGAGGTTGAGGAAGGAGCGTGGTGAATTGGAGAAGATCATTTTTAGGCTCTTTGAAAGACAAGCATATTGGACGTCAAAACAATTGATTCAAGAGACTGA
CCAACCTGAAGCTGAAACATCCAGGGCCTATCGTAAAAATCTTTCTTTTTTGCAGCAATATATGAAAGAAATCCTTAAAGACCTTTGTGTCTACAACAACAAGGGTGTTC
ACCAAGGAACATATGAGCTGAAGCCAGAATACAAGGAATCGGGCGAGGAAACGAAACCGCGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGACGTCGACGACAAATCCACCGACCGTTTCAGTTCCAGAAAACTCCAAAGCAATGCCAACGTCGTCGTCGGAGCCGACTTCGTAGAGACGAACAAGGCGGACAGAGC
AATGTGGCTCTTGAAATGCCCGCAAGCCGTAACTCGCGCCCTTTCCAATTCCTCCGATGGCCCCTCTCGTGCGGTCGCTAAGGTCATCGTTTCTGTTGACCCTCTGCAAT
CCAATGACGATGATGATTCTTCATCAACTGAGGACCGCTGGTTTTCAGAACACGGGGATCAGGAATTTATGGAGATTGGAAAAGGCCAAAGTAATTTAATGTTCACTATG
GAATTGTCTGGCACTGACTCTGGAAATGCATTAAGGTCCTACTCGTTGAACATGTCCACGGACTTCATTCCGATGTCTGTATTTTCTGAGTCAACACAAGGCAAGTTTAC
AGTCGAAGGGAAAATACTGAACAAATTTGACATGAAGCCGCATGATCAAAATCTTGAGAGGTACGGGAAACTCTGTCGCGAAAGAACTCACAAGTCTATGACCAAAAGCA
GACAGATTCAGGTGATTGATCATGTCACAGGAGGACATATGAGGCCAATGCCAGGGATGGACGTGTTGTCATTTGGAGCTGCAGAGAAGAAGAAAGTGGTAAGCAAGGGA
TCGGAAACGAAGAGGTTGAGGAAGGAGCGTGGTGAATTGGAGAAGATCATTTTTAGGCTCTTTGAAAGACAAGCATATTGGACGTCAAAACAATTGATTCAAGAGACTGA
CCAACCTGAAGCTGAAACATCCAGGGCCTATCGTAAAAATCTTTCTTTTTTGCAGCAATATATGAAAGAAATCCTTAAAGACCTTTGTGTCTACAACAACAAGGGTGTTC
ACCAAGGAACATATGAGCTGAAGCCAGAATACAAGGAATCGGGCGAGGAAACGAAACCGCGATAG
Protein sequenceShow/hide protein sequence
MDVDDKSTDRFSSRKLQSNANVVVGADFVETNKADRAMWLLKCPQAVTRALSNSSDGPSRAVAKVIVSVDPLQSNDDDDSSSTEDRWFSEHGDQEFMEIGKGQSNLMFTM
ELSGTDSGNALRSYSLNMSTDFIPMSVFSESTQGKFTVEGKILNKFDMKPHDQNLERYGKLCRERTHKSMTKSRQIQVIDHVTGGHMRPMPGMDVLSFGAAEKKKVVSKG
SETKRLRKERGELEKIIFRLFERQAYWTSKQLIQETDQPEAETSRAYRKNLSFLQQYMKEILKDLCVYNNKGVHQGTYELKPEYKESGEETKPR