CuGenDBv2

Gene ID	Lag0029830
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	40S ribosomal protein S23
Genome location	chr8:42460766..42464758
RNA-Seq Expression	Lag0029830
Synteny	Lag0029830
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR006032 - Ribosomal protein S12/S23 IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004144434.1 uncharacterized protein LOC101204721 [Cucumis sativus]

2.1e-40

88.78

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Query:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA
        M+SEALQ+AKVYRQLLKAVK H+GKEESKKHFVDYVAQ FRDKS LS+PHSIQQ+IKLARDYTFLLNSVHHQKDLLFSYNIA+DRS+EMKR+LGKSAA
Subjt:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA

XP_022933120.1 uncharacterized protein LOC111439884 [Cucurbita moschata]

5.4e-41

90.82

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Query:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA
        M+SEALQ+AKVYRQLLKAVK HIGKEE+KKHFVDYVAQ FR+KSTLS+PHS+QQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRS+EMKRILGKSAA
Subjt:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA

XP_022967927.1 uncharacterized protein LOC111467294 [Cucurbita maxima]

1.1e-41

91.84

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Query:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA
        M+SEALQ+AKVYRQLLKAVKNHIGKEE+KKHFVDYVAQ FR+KSTLS+PHS+QQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRS+EMKRILGKSAA
Subjt:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA

XP_023544932.1 uncharacterized protein LOC111804382 [Cucurbita pepo subsp. pepo]

7.8e-40

87.76

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Query:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA
        M+SEA Q+AKVYRQLLKAVKNHIGKEE+KKHFVDYVAQ FR+ ST+S+PHS+QQKIKLARDYTFLLNSVHHQKDLLFSYNIA+DRS+EMKRILGKSAA
Subjt:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA

XP_038889144.1 uncharacterized protein LOC120079034 [Benincasa hispida]

2.1e-40

89.8

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Query:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA
        M+SEALQ+AKVYRQLLKAVKNHIGKEESKKHFVDYVAQ FRDK+ LS+PHS+QQ+IKLA DYTFLLNSVHHQKDLLFSYNIA+DRSEEMKRILGKSAA
Subjt:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L9E2 Uncharacterized protein

9.9e-41

88.78

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Query:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA
        M+SEALQ+AKVYRQLLKAVK H+GKEESKKHFVDYVAQ FRDKS LS+PHSIQQ+IKLARDYTFLLNSVHHQKDLLFSYNIA+DRS+EMKR+LGKSAA
Subjt:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA

A0A5D3BQE5 Complex1_LYR domain-containing protein

3.7e-35

83.67

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Query:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA
        M+SEALQ+AK YRQLLKAVK HIGKEESKKHFVDYVAQ FRDKS LS+PHS+QQ+IKLARDYTFLLNS     DLLFSYNIA+DRS+EMKRILGKSAA
Subjt:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA

A0A6J1C0V5 uncharacterized protein LOC111006395

1.1e-39

88.78

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Query:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA
        MSSEALQ+A+VYR+LLKAVKNHIGKEESKKHFVDYVAQ FR++S LSEPHS+QQKIKLA DY  LLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA
Subjt:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA

A0A6J1EY92 uncharacterized protein LOC111439884

2.6e-41

90.82

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Query:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA
        M+SEALQ+AKVYRQLLKAVK HIGKEE+KKHFVDYVAQ FR+KSTLS+PHS+QQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRS+EMKRILGKSAA
Subjt:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA

A0A6J1HS51 uncharacterized protein LOC111467294

5.3e-42

91.84

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Query:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA
        M+SEALQ+AKVYRQLLKAVKNHIGKEE+KKHFVDYVAQ FR+KSTLS+PHS+QQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRS+EMKRILGKSAA
Subjt:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA

SwissProt top hits

e value

%identity

Alignment

P46297 40S ribosomal protein S23

9.0e-07

68.29

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Query:  LIIRVRNCEAKQPNFAIRKRARVQLIKSGKKIAAVVPNDCC
        +++     EAKQPN AIRK ARVQLIK+GKKIAA VPND C
Subjt:  LIIRVRNCEAKQPNFAIRKRARVQLIKSGKKIAAVVPNDCC

P49201 40S ribosomal protein S23-2

9.0e-07

68.29

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Query:  LIIRVRNCEAKQPNFAIRKRARVQLIKSGKKIAAVVPNDCC
        +++     EAKQPN AIRK ARVQLIK+GKKIAA VPND C
Subjt:  LIIRVRNCEAKQPNFAIRKRARVQLIKSGKKIAAVVPNDCC

Q3T199 40S ribosomal protein S23

7.7e-06

63.41

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Query:  LIIRVRNCEAKQPNFAIRKRARVQLIKSGKKIAAVVPNDCC
        +++     EAKQPN AIRK  RVQLIK+GKKI A VPND C
Subjt:  LIIRVRNCEAKQPNFAIRKRARVQLIKSGKKIAAVVPNDCC

Q9M5Z9 40S ribosomal protein S23

9.0e-07

68.29

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Query:  LIIRVRNCEAKQPNFAIRKRARVQLIKSGKKIAAVVPNDCC
        +++     EAKQPN AIRK ARVQLIK+GKKIAA VPND C
Subjt:  LIIRVRNCEAKQPNFAIRKRARVQLIKSGKKIAAVVPNDCC

Q9SF35 40S ribosomal protein S23-1

9.0e-07

68.29

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Query:  LIIRVRNCEAKQPNFAIRKRARVQLIKSGKKIAAVVPNDCC
        +++     EAKQPN AIRK ARVQLIK+GKKIAA VPND C
Subjt:  LIIRVRNCEAKQPNFAIRKRARVQLIKSGKKIAAVVPNDCC

Arabidopsis top hits

e value

%identity

Alignment

AT3G09680.1 Ribosomal protein S12/S23 family protein

6.4e-08

68.29

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Query:  LIIRVRNCEAKQPNFAIRKRARVQLIKSGKKIAAVVPNDCC
        +++     EAKQPN AIRK ARVQLIK+GKKIAA VPND C
Subjt:  LIIRVRNCEAKQPNFAIRKRARVQLIKSGKKIAAVVPNDCC

AT5G02960.1 Ribosomal protein S12/S23 family protein

6.4e-08

68.29

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Query:  LIIRVRNCEAKQPNFAIRKRARVQLIKSGKKIAAVVPNDCC
        +++     EAKQPN AIRK ARVQLIK+GKKIAA VPND C
Subjt:  LIIRVRNCEAKQPNFAIRKRARVQLIKSGKKIAAVVPNDCC

AT5G51960.1 CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

8.9e-26

59.18

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Query:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA
        MS E +  A+VYR LLKAV  H+GKE+ K HF+D+V Q FR  +         +KI LAR+YT+LLNS+H  KDLLFSYNIA+DR+EEMKR+L KSAA
Subjt:  MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAA

Sequences

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CDS sequence

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ATGAGTTCAGAAGCCCTACAGATAGCAAAGGTTTACCGTCAGCTTCTCAAAGCTGTAAAGAACCATATTGGTAAGGAAGAGAGCAAGAAGCATTTTGTGGACTACGTGGC
CCAAAACTTCAGGGACAAAAGCACACTTTCAGAACCCCATTCTATTCAACAGAAAATCAAGCTTGCTCGCGATTACACATTTCTACTCAACAGCGTTCACCATCAAAAGG
ACTTGCTGTTCTCATACAACATTGCTATTGATAGATCAGAGGAAATGAAGCGAATATTGGGCAAGTCTGCCGCAATCGAAACAACGCCATTCGGCATTCACCAGGAGGCC
AAGGCGGTATATATACATCATCCGTTCAAAGTTCCATTGCCATTCAGTCAGTCCACACACTCGGCATTCGTGTTTGGGCGTTTCTTGAGGAAGTTGCAGCGCTTTCTTAA
TCCGCCATCATCTGATACCATGGTTCTTCTTAACATGGATATGTTTGCCTTTCTTTGTCTCTATCCGATTATCTACATGGTTAAGGAGTATATTCTGATAATACGAGTGA
GGAATTGTGAAGCCAAGCAGCCGAATTTTGCTATTAGGAAACGTGCTCGTGTTCAACTGATTAAAAGTGGGAAGAAGATTGCTGCTGTTGTACCTAATGATTGTTGCTAG

mRNA sequence

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Protein sequence

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MSSEALQIAKVYRQLLKAVKNHIGKEESKKHFVDYVAQNFRDKSTLSEPHSIQQKIKLARDYTFLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAAIETTPFGIHQEA
KAVYIHHPFKVPLPFSQSTHSAFVFGRFLRKLQRFLNPPSSDTMVLLNMDMFAFLCLYPIIYMVKEYILIIRVRNCEAKQPNFAIRKRARVQLIKSGKKIAAVVPNDCC

Lag0029830 (gene) of Sponge gourd (AG-4) v1 genome