; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0030017 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0030017
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr8:43844561..43845058
RNA-Seq ExpressionLag0030017
SyntenyLag0030017
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.2e-1031.3Show/hide
Query:  LQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGK
        L ++  +    P+ C +C+   E  + ++F+ C +A  +W  + S  + + +  S   + CI   ++K K++K+++  N   ++LW+IWLERN+ IF GK
Subjt:  LQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGK

Query:  KCHIDQLWEDIIALA
        +  + ++WEDI ALA
Subjt:  KCHIDQLWEDIIALA

KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.4e-1132.74Show/hide
Query:  LQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGK
        LQ++  +  ++P  C +C N+S++ ++++F+HC  +  +W+K   A     S P+ +        +  +K+QK L+  N +   LW IWLERN+ IF+ +
Subjt:  LQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGK

Query:  KCHIDQLWEDIIA
        K     LWEDI+A
Subjt:  KCHIDQLWEDIIA

KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.4e-1132.74Show/hide
Query:  LQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGK
        LQ++  +  ++P  C +C N+S++ ++++F+HC  +  +W+K   A     S P+ +        +  +K+QK L+  N +   LW IWLERN+ IF+ +
Subjt:  LQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGK

Query:  KCHIDQLWEDIIA
        K     LWEDI+A
Subjt:  KCHIDQLWEDIIA

RVW25634.1 putative ribonuclease H protein [Vitis vinifera]3.6e-1332.37Show/hide
Query:  MLQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQI-HKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFR
        +LQ +    A++P  C LC    E ++D++FLHCS+   +W++LF +  + +  P  I       F  F    +  +L+QN  +A +W +W ERN+ IF 
Subjt:  MLQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQI-HKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFR

Query:  GKKCHIDQLWEDIIALALYGLHLLIFIPAMMRLPFPLIG
         K  + + LW+ I+ L L+GL +L F+   + + + LIG
Subjt:  GKKCHIDQLWEDIIALALYGLHLLIFIPAMMRLPFPLIG

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]2.2e-1031.3Show/hide
Query:  LQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGK
        L ++  +    P+ C +C+   E  + ++F+ C +A  +W  + S  + + +  S   + CI   ++K K++K+++  N   ++LW+IWLERN+ IF GK
Subjt:  LQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGK

Query:  KCHIDQLWEDIIALA
        +  + ++WEDI ALA
Subjt:  KCHIDQLWEDIIALA

TrEMBL top hitse value%identityAlignment
A0A438CR03 Putative ribonuclease H protein1.7e-1332.37Show/hide
Query:  MLQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQI-HKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFR
        +LQ +    A++P  C LC    E ++D++FLHCS+   +W++LF +  + +  P  I       F  F    +  +L+QN  +A +W +W ERN+ IF 
Subjt:  MLQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQI-HKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFR

Query:  GKKCHIDQLWEDIIALALYGLHLLIFIPAMMRLPFPLIG
         K  + + LW+ I+ L L+GL +L F+   + + + LIG
Subjt:  GKKCHIDQLWEDIIALALYGLHLLIFIPAMMRLPFPLIG

A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein1.6e-1132.74Show/hide
Query:  LQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGK
        LQ++  +  ++P  C +C N+S++ ++++F+HC  +  +W+K   A     S P+ +        +  +K+QK L+  N +   LW IWLERN+ IF+ +
Subjt:  LQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGK

Query:  KCHIDQLWEDIIA
        K     LWEDI+A
Subjt:  KCHIDQLWEDIIA

A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein1.6e-1132.74Show/hide
Query:  LQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGK
        LQ++  +  ++P  C +C N+S++ ++++F+HC  +  +W+K   A     S P+ +        +  +K+QK L+  N +   LW IWLERN+ IF+ +
Subjt:  LQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGK

Query:  KCHIDQLWEDIIA
        K     LWEDI+A
Subjt:  KCHIDQLWEDIIA

A0A5D3CPL6 LINE-1 retrotransposable element ORF2 protein1.1e-1031.3Show/hide
Query:  LQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGK
        L ++  +    P+ C +C+   E  + ++F+ C +A  +W  + S  + + +  S   + CI   ++K K++K+++  N   ++LW+IWLERN+ IF GK
Subjt:  LQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGK

Query:  KCHIDQLWEDIIALA
        +  + ++WEDI ALA
Subjt:  KCHIDQLWEDIIALA

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein1.1e-1031.3Show/hide
Query:  LQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGK
        L ++  +    P+ C +C+   E  + ++F+ C +A  +W  + S  + + +  S   + CI   ++K K++K+++  N   ++LW+IWLERN+ IF GK
Subjt:  LQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGK

Query:  KCHIDQLWEDIIALA
        +  + ++WEDI ALA
Subjt:  KCHIDQLWEDIIALA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCCAAAGGAAATTCAAGTCTACAGCCATGAATCCAACCAGGTGCGCTTTATGCCAGAACCAGTCAGAACAATCTTTGGACTATATCTTTCTTCATTGTTCCGTTGC
AAGCTTCGTTTGGAACAAGTTATTCAGTGCAAAGGCTCTTCATTTTTCTAGACCAAGTCAGATTCACAAGTTTTGTATTGAGTTTCTCGCTTTTAAGTTGAAATCTCAAA
AGGATCTCCTCTTCCAGAATATTATGGTAGCGTCTTTGTGGTCCATCTGGTTGGAGAGAAACAGTTGTATCTTCAGAGGAAAGAAGTGTCATATTGATCAGCTTTGGGAG
GATATCATTGCACTTGCGCTGTATGGTCTTCATCTTCTAATCTTTATTCCAGCTATGATGCGTCTTCCATTTCCCTTAATTGGAAGGCCTTTTTATAATAATTTTAGAAG
TTACAACAATTCTCAAATTAAGTCTTCGAAAGTGAGGAAGACTAACAAGATAATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCCAAAGGAAATTCAAGTCTACAGCCATGAATCCAACCAGGTGCGCTTTATGCCAGAACCAGTCAGAACAATCTTTGGACTATATCTTTCTTCATTGTTCCGTTGC
AAGCTTCGTTTGGAACAAGTTATTCAGTGCAAAGGCTCTTCATTTTTCTAGACCAAGTCAGATTCACAAGTTTTGTATTGAGTTTCTCGCTTTTAAGTTGAAATCTCAAA
AGGATCTCCTCTTCCAGAATATTATGGTAGCGTCTTTGTGGTCCATCTGGTTGGAGAGAAACAGTTGTATCTTCAGAGGAAAGAAGTGTCATATTGATCAGCTTTGGGAG
GATATCATTGCACTTGCGCTGTATGGTCTTCATCTTCTAATCTTTATTCCAGCTATGATGCGTCTTCCATTTCCCTTAATTGGAAGGCCTTTTTATAATAATTTTAGAAG
TTACAACAATTCTCAAATTAAGTCTTCGAAAGTGAGGAAGACTAACAAGATAATTTGA
Protein sequenceShow/hide protein sequence
MLQRKFKSTAMNPTRCALCQNQSEQSLDYIFLHCSVASFVWNKLFSAKALHFSRPSQIHKFCIEFLAFKLKSQKDLLFQNIMVASLWSIWLERNSCIFRGKKCHIDQLWE
DIIALALYGLHLLIFIPAMMRLPFPLIGRPFYNNFRSYNNSQIKSSKVRKTNKII