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Lag0030018 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0030018
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr8:43845092..43845418
RNA-Seq ExpressionLag0030018
SyntenyLag0030018
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047098.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.4e-0429.41Show/hide
Query:  ITVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFSTASARLICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKI
        I+V +AW      WN   R  + DRE   W  +    P P S+ R +   WT + + SFS ASA+++ S     S  + +    +L  +W++    K K 
Subjt:  ITVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFSTASARLICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKI

Query:  FL
        F+
Subjt:  FL

XP_008446987.1 PREDICTED: uncharacterized protein LOC103489530 [Cucumis melo]4.4e-0429.41Show/hide
Query:  ITVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFSTASARLICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKI
        I+V +AW      WN   R  + DRE   W  +    P P S+ R +   WT + + SFS ASA+++ S     S  + +    +L  +W++    K K 
Subjt:  ITVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFSTASARLICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKI

Query:  FL
        F+
Subjt:  FL

XP_031744692.1 uncharacterized protein LOC116405125 [Cucumis sativus]2.4e-0530.69Show/hide
Query:  TVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFSTASARLICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKIF
        ++   W A    W+ +PR  +   E + WED+  + P    SG  N  RWT N +GSF+ AS +L    L++    N+     + +NLW++   ++CK F
Subjt:  TVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFSTASARLICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKIF

Query:  L
        +
Subjt:  L

TrEMBL top hitse value%identityAlignment
A0A1S3BGD2 uncharacterized protein LOC1034895302.2e-0429.41Show/hide
Query:  ITVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFSTASARLICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKI
        I+V +AW      WN   R  + DRE   W  +    P P S+ R +   WT + + SFS ASA+++ S     S  + +    +L  +W++    K K 
Subjt:  ITVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFSTASARLICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKI

Query:  FL
        F+
Subjt:  FL

A0A5A7UBH7 Reverse transcriptase8.2e-0431.37Show/hide
Query:  TVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFSTASAR-LICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKI
        +V +AW      WN   R  + DRE   W  +    P P S+   +   WT + + SFS ASA+ LI   LD S G        +L  +W++    K K 
Subjt:  TVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFSTASAR-LICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKI

Query:  FL
        F+
Subjt:  FL

A0A5D3C104 LINE-1 retrotransposable element ORF2 protein2.2e-0429.41Show/hide
Query:  ITVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFSTASARLICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKI
        I+V +AW      WN   R  + DRE   W  +    P P S+ R +   WT + + SFS ASA+++ S     S  + +    +L  +W++    K K 
Subjt:  ITVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFSTASARLICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKI

Query:  FL
        F+
Subjt:  FL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAGATGTTCATCATATAACTGTTAATGAGGCATGGTTTGCAGTATCTCGTAGTTGGAACTTTTTTCCCAGGCACCTGGTGTTTGATAGAGAAGTTATTGCGTGGGA
GGATGTGGCTGCAACTTTCCCTTGTCCTTCTTCTTCAGGAAGGCCTAATACCTTTCGTTGGACTGCAAATTTGGATGGCTCCTTTAGCACAGCTTCAGCTCGCCTCATTT
GTAGCGATCTAGATAGTTCGAGTGGTTTGAATGATCAAATTCCAGTTTTTGTGCTGTCTAATCTTTGGAGAGCTAACTTTTCCAGAAAATGCAAAATTTTCCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAGATGTTCATCATATAACTGTTAATGAGGCATGGTTTGCAGTATCTCGTAGTTGGAACTTTTTTCCCAGGCACCTGGTGTTTGATAGAGAAGTTATTGCGTGGGA
GGATGTGGCTGCAACTTTCCCTTGTCCTTCTTCTTCAGGAAGGCCTAATACCTTTCGTTGGACTGCAAATTTGGATGGCTCCTTTAGCACAGCTTCAGCTCGCCTCATTT
GTAGCGATCTAGATAGTTCGAGTGGTTTGAATGATCAAATTCCAGTTTTTGTGCTGTCTAATCTTTGGAGAGCTAACTTTTCCAGAAAATGCAAAATTTTCCTCTAG
Protein sequenceShow/hide protein sequence
MTDVHHITVNEAWFAVSRSWNFFPRHLVFDREVIAWEDVAATFPCPSSSGRPNTFRWTANLDGSFSTASARLICSDLDSSSGLNDQIPVFVLSNLWRANFSRKCKIFL