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Lag0030105 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0030105
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr8:44632418..44635608
RNA-Seq ExpressionLag0030105
SyntenyLag0030105
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7802400.1 uncharacterized protein G2W53_041511 [Senna tora]1.7e-1137.82Show/hide
Query:  SLTSHESWSPPPAPFWKLNVDTSKSDRLRSGG---VGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSLPILKAKHPNLAIPPIMVELDAVGV
        ++   + W PP   F KLNVD S    +R GG   VG I+RD  G  +    K+I   +SV+M E +A+ EG+     + AK   ++I  ++VE D+  V
Subjt:  SLTSHESWSPPPAPFWKLNVDTSKSDRLRSGG---VGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSLPILKAKHPNLAIPPIMVELDAVGV

Query:  VNLLSNEEVDLTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLACMEVSPPS
        + LL+ E +D T  SF++KDILQ        SF++  R  N VAH LA   V+ PS
Subjt:  VNLLSNEEVDLTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLACMEVSPPS

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.7e-1134.78Show/hide
Query:  WSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSLPILKAKHPNLAIPPIMVELDAVGVVNLLSNEEVD
        W PP +  WKLN + +      +GG+GWILRD  G ++    + I    ++  LE++AI EGL++   ++ +H      PI +E D++  ++LL  +  D
Subjt:  WSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSLPILKAKHPNLAIPPIMVELDAVGVVNLLSNEEVD

Query:  LTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLA
         TE  +LL++I Q  +D   +S  + SR  N VAH LA
Subjt:  LTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]7.3e-1534.34Show/hide
Query:  EYLSEKAYQLGAEASSSGRPKSLTSHESWSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSLPILKAK
        ++++E +YQ  +E S S   K+L +   W PPP   W LN D S SD    GG+GWI+R   G +V  G + +    +VK+LE  AI EGL++L  L   
Subjt:  EYLSEKAYQLGAEASSSGRPKSLTSHESWSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSLPILKAK

Query:  HPNLAIPPIMVELDAVGVVNLLSNEEVDLTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLA
             + P+ +E D+  V +LL+ +  DLT+  +++++IL   +    ++F+   R  N  AH LA
Subjt:  HPNLAIPPIMVELDAVGVVNLLSNEEVDLTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLA

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]9.9e-1236.11Show/hide
Query:  WSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSL------PILKAKHPNLAIPPIMVELDAVGVVNLL
        W PP +  WKLN D +      +GG+GWILRD  G ++    + I    ++  LE++AI EGL+++      PI + +H      PI +E D++  ++LL
Subjt:  WSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSL------PILKAKHPNLAIPPIMVELDAVGVVNLL

Query:  SNEEVDLTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLA
          +  D TE  +LL++I Q  ED   +S  + SR  N VAH LA
Subjt:  SNEEVDLTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLA

XP_030958321.1 uncharacterized protein LOC115980180 [Quercus lobata]3.2e-1034.67Show/hide
Query:  SGRPKSLTSHESWSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSLPILKAKHPNLAIPPIMVELDAV
        S RP   T    WSPPP   +K+NVD + S+   +  +G I+RD  G  V    K +  ++  +++E+IA+++G     IL A+  +L  P ++ E DA 
Subjt:  SGRPKSLTSHESWSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSLPILKAKHPNLAIPPIMVELDAV

Query:  GVVNLLSNEEVDLTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLA
         VVN + NE    T    +++DI+QA       +F + SRA N  AH LA
Subjt:  GVVNLLSNEEVDLTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLA

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134128.1e-1234.78Show/hide
Query:  WSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSLPILKAKHPNLAIPPIMVELDAVGVVNLLSNEEVD
        W PP +  WKLN + +      +GG+GWILRD  G ++    + I    ++  LE++AI EGL++   ++ +H      PI +E D++  ++LL  +  D
Subjt:  WSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSLPILKAKHPNLAIPPIMVELDAVGVVNLLSNEEVD

Query:  LTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLA
         TE  +LL++I Q  +D   +S  + SR  N VAH LA
Subjt:  LTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLA

A0A6J1CQG0 uncharacterized protein LOC1110132162.9e-0940.2Show/hide
Query:  WSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSLPILKAKHPNLAIPPIMVELDAVGVVNLLSNEEVD
        WS PP   WKLN D S S+    GG+GWIL D  G +V  G  KI +   +  LEL+ I  GL+ + +           PI +E D+V V+ L+  E+VD
Subjt:  WSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSLPILKAKHPNLAIPPIMVELDAVGVVNLLSNEEVD

Query:  LT
        LT
Subjt:  LT

A0A6J1DNV9 uncharacterized protein LOC1110224033.5e-1534.34Show/hide
Query:  EYLSEKAYQLGAEASSSGRPKSLTSHESWSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSLPILKAK
        ++++E +YQ  +E S S   K+L +   W PPP   W LN D S SD    GG+GWI+R   G +V  G + +    +VK+LE  AI EGL++L  L   
Subjt:  EYLSEKAYQLGAEASSSGRPKSLTSHESWSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSLPILKAK

Query:  HPNLAIPPIMVELDAVGVVNLLSNEEVDLTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLA
             + P+ +E D+  V +LL+ +  DLT+  +++++IL   +    ++F+   R  N  AH LA
Subjt:  HPNLAIPPIMVELDAVGVVNLLSNEEVDLTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLA

A0A6J1DSV1 uncharacterized protein LOC1110236084.8e-1236.11Show/hide
Query:  WSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSL------PILKAKHPNLAIPPIMVELDAVGVVNLL
        W PP +  WKLN D +      +GG+GWILRD  G ++    + I    ++  LE++AI EGL+++      PI + +H      PI +E D++  ++LL
Subjt:  WSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSL------PILKAKHPNLAIPPIMVELDAVGVVNLL

Query:  SNEEVDLTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLA
          +  D TE  +LL++I Q  ED   +S  + SR  N VAH LA
Subjt:  SNEEVDLTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLA

A0A7J6F041 CCHC-type domain-containing protein1.3e-0926.05Show/hide
Query:  ILNHPLNTPLDDISSPDEIIWNHGERGTFSVKSAFHLAENLAKAQEPSSSNSRSKEN-----------QQLICFGIAKSRKSRESYHNPMEH-FGSIETQ
        I++  L+ P  DI   D   W H   G +SVK+ +H+A+      +PSSSN+ + +             ++  F    S+KS  +  N   +  G +   
Subjt:  ILNHPLNTPLDDISSPDEIIWNHGERGTFSVKSAFHLAENLAKAQEPSSSNSRSKEN-----------QQLICFGIAKSRKSRESYHNPMEH-FGSIETQ

Query:  FLHQNIIPDAVQIIRNIERFSGEEYLSEKAYQLGAEASSSGRPKSLTSHESWSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNW
        F+ +N   ++ +I +  + +      S+K +Q      +  +P +  + E+W+PPP  F KLNVD + S +    G+G ++RDS+G ++       +   
Subjt:  FLHQNIIPDAVQIIRNIERFSGEEYLSEKAYQLGAEASSSGRPKSLTSHESWSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNW

Query:  SVKMLELIAIQEGLK
          K+ E  A+ EGL+
Subjt:  SVKMLELIAIQEGLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.1e-0726.56Show/hide
Query:  RNIERFSGEEY------------LSEKAYQLGAEASSSGRPKSLTSHESWSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSV
        RN   F G+EY              E + +   E  +SG          W  PP  + K N D +        G+GWILR+ SG ++ +G + + +  +V
Subjt:  RNIERFSGEEY------------LSEKAYQLGAEASSSGRPKSLTSHESWSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSV

Query:  KMLELIAIQEGLKSLPILKAKHPNLAIPPIMVELDAVGVVNLLSNEEVDLTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLACMEVS
           EL A++  + ++     K        I+ E DA  +VNLL++++   T     L+DI Q       + F +  R  N VA R+A   +S
Subjt:  KMLELIAIQEGLKSLPILKAKHPNLAIPPIMVELDAVGVVNLLSNEEVDLTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLACMEVS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTATCATATACTCAATCATCCTCTCAATACCCCTTTGGATGATATCTCGAGTCCTGACGAGATTATTTGGAACCATGGGGAGAGAGGCACCTTTTCAGTAAAAAG
TGCCTTCCATTTGGCTGAAAATTTAGCTAAGGCTCAGGAACCTTCTTCCTCCAATTCTAGAAGCAAAGAGAATCAACAGCTCATTTGTTTTGGAATTGCAAAATCAAGGA
AGTCTCGAGAAAGTTATCATAATCCTATGGAGCATTTTGGAAGCATAGAAACGCAGTTTCTCCACCAAAATATCATCCCAGATGCAGTCCAAATTATCAGAAATATTGAA
AGATTTTCAGGAGAGGAATATTTGTCAGAGAAAGCGTACCAGTTGGGAGCTGAAGCTTCGTCGTCAGGCAGACCTAAGAGTCTCACGAGTCATGAAAGTTGGTCTCCTCC
GCCAGCGCCTTTTTGGAAGCTCAATGTAGACACATCAAAATCAGATCGTCTTCGTTCGGGAGGAGTCGGTTGGATACTACGTGACTCGTCAGGATCTTTGGTCTGTTTGG
GATTCAAGAAAATTTTGAAGAACTGGTCTGTCAAAATGCTTGAGCTTATAGCAATTCAAGAAGGGCTAAAGAGTTTACCTATCTTGAAAGCGAAGCATCCAAATTTGGCC
ATTCCCCCAATCATGGTCGAATTGGATGCAGTGGGAGTCGTCAATCTCCTTAGCAACGAGGAAGTCGATCTCACGGAAAATTCCTTCTTATTGAAGGACATTCTTCAAGC
AAGCGAAGATCAGGGAGGAATTTCATTCTCCTATTGTTCGCGTGCCAAGAATGTTGTTGCCCATCGTTTGGCGTGCATGGAAGTTTCCCCTCCGTCTTGTTTTTGCCATT
CTTTTTTTGGTTCTTCTACTTCAGAAGAAGACGTTTTCTTATGTATTGGGTTGCCCCTGATTGGGTTGTTGGGCCTCTTTATGACAAAGATAGCTGAAGAAACCTCTCGA
TGCAACATGGAACTTGGGATGAAGACAGACATACGTGAACAAGAAGTGAAGAACAATGAAGAAGGAGAGCAAGAACACACAGATGTAAAGTGGTTCGGCAACAAGGCCTA
CGTCCACTGTGATGAAGGGAGTTCCCTACATGCTTCAGGTGAATTTTTCTCAAGGGACTTTGAAGATGGCAACCGGATAAACAGGCTTGGTAGAGCTTTGGTCAGAATAT
CAGCTGCGTTGTCCATGGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTATCATATACTCAATCATCCTCTCAATACCCCTTTGGATGATATCTCGAGTCCTGACGAGATTATTTGGAACCATGGGGAGAGAGGCACCTTTTCAGTAAAAAG
TGCCTTCCATTTGGCTGAAAATTTAGCTAAGGCTCAGGAACCTTCTTCCTCCAATTCTAGAAGCAAAGAGAATCAACAGCTCATTTGTTTTGGAATTGCAAAATCAAGGA
AGTCTCGAGAAAGTTATCATAATCCTATGGAGCATTTTGGAAGCATAGAAACGCAGTTTCTCCACCAAAATATCATCCCAGATGCAGTCCAAATTATCAGAAATATTGAA
AGATTTTCAGGAGAGGAATATTTGTCAGAGAAAGCGTACCAGTTGGGAGCTGAAGCTTCGTCGTCAGGCAGACCTAAGAGTCTCACGAGTCATGAAAGTTGGTCTCCTCC
GCCAGCGCCTTTTTGGAAGCTCAATGTAGACACATCAAAATCAGATCGTCTTCGTTCGGGAGGAGTCGGTTGGATACTACGTGACTCGTCAGGATCTTTGGTCTGTTTGG
GATTCAAGAAAATTTTGAAGAACTGGTCTGTCAAAATGCTTGAGCTTATAGCAATTCAAGAAGGGCTAAAGAGTTTACCTATCTTGAAAGCGAAGCATCCAAATTTGGCC
ATTCCCCCAATCATGGTCGAATTGGATGCAGTGGGAGTCGTCAATCTCCTTAGCAACGAGGAAGTCGATCTCACGGAAAATTCCTTCTTATTGAAGGACATTCTTCAAGC
AAGCGAAGATCAGGGAGGAATTTCATTCTCCTATTGTTCGCGTGCCAAGAATGTTGTTGCCCATCGTTTGGCGTGCATGGAAGTTTCCCCTCCGTCTTGTTTTTGCCATT
CTTTTTTTGGTTCTTCTACTTCAGAAGAAGACGTTTTCTTATGTATTGGGTTGCCCCTGATTGGGTTGTTGGGCCTCTTTATGACAAAGATAGCTGAAGAAACCTCTCGA
TGCAACATGGAACTTGGGATGAAGACAGACATACGTGAACAAGAAGTGAAGAACAATGAAGAAGGAGAGCAAGAACACACAGATGTAAAGTGGTTCGGCAACAAGGCCTA
CGTCCACTGTGATGAAGGGAGTTCCCTACATGCTTCAGGTGAATTTTTCTCAAGGGACTTTGAAGATGGCAACCGGATAAACAGGCTTGGTAGAGCTTTGGTCAGAATAT
CAGCTGCGTTGTCCATGGTATGA
Protein sequenceShow/hide protein sequence
MFYHILNHPLNTPLDDISSPDEIIWNHGERGTFSVKSAFHLAENLAKAQEPSSSNSRSKENQQLICFGIAKSRKSRESYHNPMEHFGSIETQFLHQNIIPDAVQIIRNIE
RFSGEEYLSEKAYQLGAEASSSGRPKSLTSHESWSPPPAPFWKLNVDTSKSDRLRSGGVGWILRDSSGSLVCLGFKKILKNWSVKMLELIAIQEGLKSLPILKAKHPNLA
IPPIMVELDAVGVVNLLSNEEVDLTENSFLLKDILQASEDQGGISFSYCSRAKNVVAHRLACMEVSPPSCFCHSFFGSSTSEEDVFLCIGLPLIGLLGLFMTKIAEETSR
CNMELGMKTDIREQEVKNNEEGEQEHTDVKWFGNKAYVHCDEGSSLHASGEFFSRDFEDGNRINRLGRALVRISAALSMV