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Lag0030122 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0030122
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description40S ribosomal protein S19
Genome locationchr8:44767487..44768824
RNA-Seq ExpressionLag0030122
SyntenyLag0030122
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001266 - Ribosomal protein S19e
IPR018277 - Ribosomal protein S19e, conserved site
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578553.1 40S ribosomal protein S19-3, partial [Cucurbita argyrosperma subsp. sororia]5.9e-6790.91Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA           GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGR+ITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

KAG6593129.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.2e-6792.31Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA           GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022923365.1 40S ribosomal protein S19-3-like [Cucurbita moschata]2.6e-6791.61Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA           GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022938991.1 40S ribosomal protein S19-3 [Cucurbita moschata]5.9e-6790.91Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA           GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGR+ITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

XP_022954406.1 40S ribosomal protein S19-3-like [Cucurbita moschata]1.2e-6792.31Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA           GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

TrEMBL top hitse value%identityAlignment
A0A6J1EBL3 40S ribosomal protein S19-3-like1.3e-6791.61Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA           GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1H7M6 40S ribosomal protein S19-3-like5.7e-6892.31Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA           GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1JTL0 40S ribosomal protein S19-3-like1.3e-6791.61Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA           GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1JTW8 40S ribosomal protein S19-3-like5.7e-6892.31Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA           GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

A0A6J1JX06 40S ribosomal protein S19-32.9e-6790.91Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MATA+TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA           GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQLQEMNIVDVDPKGGR+ITSSGRRDLDQVAGRIVVAP
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

SwissProt top hitse value%identityAlignment
P40978 40S ribosomal protein S194.4e-5775Show/hide
Query:  ATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAIA
        +TARTVKDV+PHEFVKAY+AHLKRSGK+ELP W DIVKTARFKEL PYDPDWYY RA           G+GVG F++IYGG +RNGSRPPHFC+SSGAI+
Subjt:  ATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAIA

Query:  RHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVV
        R+ILQQLQ+M I+DVDPKGGR ITS GRRDLDQVAGR+ V
Subjt:  RHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVV

Q94613 40S ribosomal protein S192.2e-4053.73Show/hide
Query:  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAG-----------LGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHIL
        +VKDVS HEF +A+AA LK+SGK+++P WTD VKT  FKEL+PY+PDWY++RA             G+G+F++IYGG +R G+ P HFC+++G+I+R +L
Subjt:  TVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAG-----------LGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHIL

Query:  QQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI
        Q L+ + IV+ DP GGRR+TS GRRDLD++A +I
Subjt:  QQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI

Q9FNP8 40S ribosomal protein S19-36.6e-6178.87Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RA           GLGVGAF+RIYGGSKRNGSRPPHFC+SSG +
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILQQLQ MNIVD+D KGGR+ITSSG+RDLDQVAGRI  A
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA

Q9LF30 40S ribosomal protein S19-23.6e-5978.42Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RA           GLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI
        ARHILQQL+ M+IV++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI

Q9SGA6 40S ribosomal protein S19-18.6e-6177.62Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RA           GLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQL+ MNIV++D KGGRRITSSG+RDLDQVAGRI V P
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

Arabidopsis top hitse value%identityAlignment
AT3G02080.1 Ribosomal protein S19e family protein6.1e-6277.62Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RA           GLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP
        ARHILQQL+ MNIV++D KGGRRITSSG+RDLDQVAGRI V P
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVAP

AT5G15520.1 Ribosomal protein S19e family protein2.6e-6078.42Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYY+RA           GLGVGAF+RIYGGSKRNGSRPPHFC+SSG I
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI
        ARHILQQL+ M+IV++D KGGRRITSSG+RDLDQVAGRI
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRI

AT5G61170.1 Ribosomal protein S19e family protein4.7e-6278.87Show/hide
Query:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI
        MAT +TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYY+RA           GLGVGAF+RIYGGSKRNGSRPPHFC+SSG +
Subjt:  MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRA-----------GLGVGAFKRIYGGSKRNGSRPPHFCESSGAI

Query:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA
        ARHILQQLQ MNIVD+D KGGR+ITSSG+RDLDQVAGRI  A
Subjt:  ARHILQQLQEMNIVDVDPKGGRRITSSGRRDLDQVAGRIVVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGGCAAGGACTGTGAAAGACGTCTCTCCTCACGAATTTGTGAAGGCGTATGCGGCTCATCTTAAGAGATCTGGAAAGGTTGAACTTCCCCCATGGACAGATAT
AGTTAAGACTGCAAGATTCAAGGAGCTTGCTCCTTATGACCCTGATTGGTATTATGTCAGAGCTGGTCTTGGTGTGGGGGCTTTTAAGCGGATTTATGGTGGAAGCAAGA
GGAATGGAAGTCGCCCTCCTCACTTCTGTGAAAGCAGTGGTGCAATTGCCCGTCACATTTTACAACAGTTGCAGGAAATGAACATCGTTGATGTTGATCCTAAGGGCGGC
CGGAGAATCACTTCAAGTGGCCGACGGGATCTTGACCAAGTTGCTGGCCGGATTGTTGTTGCCCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGACGGCAAGGACTGTGAAAGACGTCTCTCCTCACGAATTTGTGAAGGCGTATGCGGCTCATCTTAAGAGATCTGGAAAGGTTGAACTTCCCCCATGGACAGATAT
AGTTAAGACTGCAAGATTCAAGGAGCTTGCTCCTTATGACCCTGATTGGTATTATGTCAGAGCTGGTCTTGGTGTGGGGGCTTTTAAGCGGATTTATGGTGGAAGCAAGA
GGAATGGAAGTCGCCCTCCTCACTTCTGTGAAAGCAGTGGTGCAATTGCCCGTCACATTTTACAACAGTTGCAGGAAATGAACATCGTTGATGTTGATCCTAAGGGCGGC
CGGAGAATCACTTCAAGTGGCCGACGGGATCTTGACCAAGTTGCTGGCCGGATTGTTGTTGCCCCTTGA
Protein sequenceShow/hide protein sequence
MATARTVKDVSPHEFVKAYAAHLKRSGKVELPPWTDIVKTARFKELAPYDPDWYYVRAGLGVGAFKRIYGGSKRNGSRPPHFCESSGAIARHILQQLQEMNIVDVDPKGG
RRITSSGRRDLDQVAGRIVVAP