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Lag0030171 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0030171
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionDNA-directed RNA polymerase
Genome locationchr8:45101598..45103900
RNA-Seq ExpressionLag0030171
SyntenyLag0030171
Gene Ontology termsGO:0006390 - mitochondrial transcription (biological process)
GO:0034968 - histone lysine methylation (biological process)
GO:0034245 - mitochondrial DNA-directed RNA polymerase complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0018024 - histone-lysine N-methyltransferase activity (molecular function)
InterPro domainsIPR002092 - DNA-directed RNA polymerase, phage-type
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578529.1 DNA-directed RNA polymerase 2, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]6.2e-2186.15Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI
        RVLEI+++D Q+DP TFPDALR KTLI QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE AAI
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI

XP_022134053.1 DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Momordica charantia]4.8e-2187.69Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI
        RVLEIMQRD Q+DPA FPDALR K LI QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE A+I
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI

XP_022939617.1 DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like [Cucurbita moschata]6.2e-2186.15Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI
        RVLEI+++D Q+DP TFPDALR KTLI QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE AAI
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI

XP_038890080.1 DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like isoform X1 [Benincasa hispida]1.1e-2292.31Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI
        RVLEIM+RD QKDPATFPDALR KTLI QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE AAI
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI

XP_038890081.1 DNA-directed RNA polymerase 2, chloroplastic/mitochondrial-like isoform X2 [Benincasa hispida]1.1e-2292.31Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI
        RVLEIM+RD QKDPATFPDALR KTLI QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE AAI
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI

TrEMBL top hitse value%identityAlignment
A0A498HDD0 DNA-directed RNA polymerase6.7e-2184.62Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI
        RVLEIM+RD QKDPA FP+ALR K L+ QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE +AI
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI

A0A6J1C0Y4 DNA-directed RNA polymerase2.3e-2187.69Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI
        RVLEIMQRD Q+DPA FPDALR K LI QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE A+I
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI

A0A6J1FHA8 DNA-directed RNA polymerase3.0e-2186.15Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI
        RVLEI+++D Q+DP TFPDALR KTLI QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE AAI
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI

A0A6J1JUF5 DNA-directed RNA polymerase3.0e-2186.15Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI
        RVLEI+++D Q+DP TFPDALR KTLI QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE AAI
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI

A0A7J7CNH3 DNA-directed RNA polymerase5.2e-2184.62Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI
        RVL+IM+RD QKDPA FPDALR +TL+ QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE +AI
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI

SwissProt top hitse value%identityAlignment
Q8L6J2 DNA-directed RNA polymerase 2A (Fragment)1.5e-2280Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI
        RVL+IM+RD Q+DPA FPDA+R + L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE  AI
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI

Q8L6J3 DNA-directed RNA polymerase 2B, chloroplastic/mitochondrial1.5e-2280Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI
        RVL+IM+RD Q+DPA FPDA+R + L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE  AI
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI

Q8VWF8 DNA-directed RNA polymerase 2, chloroplastic/mitochondrial1.5e-2280Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI
        RVL+IM+RD Q+DPA FPDA+R + L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE  AI
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI

Q93Y94 DNA-directed RNA polymerase 1, mitochondrial7.2e-2075.38Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI
        RVL+IM+RD  KDPA  P+ +R + LI+QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE   I
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAI

Q9LFV6 DNA-directed RNA polymerase 2, chloroplastic/mitochondrial1.9e-2076.19Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHA
        RVL+IM+RD  +DP  FP+ALR + L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE +
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHA

Arabidopsis top hitse value%identityAlignment
AT1G68990.1 male gametophyte defective 32.1e-1973.77Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE
        RVL+IMQ+D ++DP TFP+A   K ++ QVDRKLVKQTVMTSVYGVTY GARDQIK+RLKE
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE

AT1G68990.2 male gametophyte defective 32.1e-1973.77Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE
        RVL+IMQ+D ++DP TFP+A   K ++ QVDRKLVKQTVMTSVYGVTY GARDQIK+RLKE
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE

AT2G24120.2 DNA/RNA polymerases superfamily protein2.0e-1755.43Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAIHRIATSLQLRFLQIVAVCFHVYVNVCA
        RV EIM++D+ KDP + P A   K LI QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRL+E   I    T  ++ F    A C+   V + A
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAIHRIATSLQLRFLQIVAVCFHVYVNVCA

AT5G15700.1 DNA/RNA polymerases superfamily protein1.3e-2176.19Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHA
        RVL+IM+RD  +DP  FP+ALR + L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE +
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHA

AT5G15700.2 DNA/RNA polymerases superfamily protein1.3e-2176.19Show/hide
Query:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHA
        RVL+IM+RD  +DP  FP+ALR + L++QVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE +
Subjt:  RVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATATCTAGTACTCCAGAACATAATGTGCACAGGGTTCTAGAAATCATGCAGAGGGATACACAAAAAGATCCAGCAACTTTTCCAGATGCATTGCGTACAAAAACATT
AATACATCAGGTGGACAGGAAATTGGTGAAGCAGACAGTGATGACATCAGTGTATGGTGTCACCTACATCGGTGCTCGTGATCAGATCAAAAGGAGGCTGAAGGAACATG
CTGCCATACATAGGATTGCTACATCTCTGCAGCTCAGATTCTTACAAATTGTTGCAGTTTGCTTTCATGTATATGTAAATGTTTGTGCATGTGCTGTGTATAATAGACTG
GCAATTTGCCCTCTGAATCTGTTGGTTCTGTTGTTTGATGGGGAAACCAGCTACTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGATATCTAGTACTCCAGAACATAATGTGCACAGGGTTCTAGAAATCATGCAGAGGGATACACAAAAAGATCCAGCAACTTTTCCAGATGCATTGCGTACAAAAACATT
AATACATCAGGTGGACAGGAAATTGGTGAAGCAGACAGTGATGACATCAGTGTATGGTGTCACCTACATCGGTGCTCGTGATCAGATCAAAAGGAGGCTGAAGGAACATG
CTGCCATACATAGGATTGCTACATCTCTGCAGCTCAGATTCTTACAAATTGTTGCAGTTTGCTTTCATGTATATGTAAATGTTTGTGCATGTGCTGTGTATAATAGACTG
GCAATTTGCCCTCTGAATCTGTTGGTTCTGTTGTTTGATGGGGAAACCAGCTACTTATAG
Protein sequenceShow/hide protein sequence
MISSTPEHNVHRVLEIMQRDTQKDPATFPDALRTKTLIHQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKEHAAIHRIATSLQLRFLQIVAVCFHVYVNVCACAVYNRL
AICPLNLLVLLFDGETSYL