CuGenDBv2

Gene ID	Lag0030374
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Pentatricopeptide repeat-containing protein
Genome location	chr8:46735728..46736048
RNA-Seq Expression	Lag0030374
Synteny	Lag0030374
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6578360.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]

1.3e-35

86.02

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Query:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN
        L  AGHFLAASKLLRGL+SD+A PDSHVTLLKGFADAGEV LAKQHVEWV+ETSP +LSVIS+ELLAFLPS+P+ADPILQILQTIQELSRF+N
Subjt:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN

KAG7015944.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.7e-37

79.41

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Query:  MMELNITGILNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRF
        +   N+  + N AGHFLAASKLLRGL+SD+A PDSHVTLLKGFADAGEV LAKQHVEWV+ETSP +LSVIS+ELLAFLPS+P+ADPILQILQTIQELSRF
Subjt:  MMELNITGILNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRF

Query:  SN
        +N
Subjt:  SN

XP_022939514.1 pentatricopeptide repeat-containing protein At5g14080 isoform X1 [Cucurbita moschata]

1.3e-35

86.02

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Query:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN
        L  AGHFLAASKLLRGL+SD+A PDSHVTLLKGFADAGEV LAKQHVEWV+ETSP +LSVIS+ELLAFLPS+P+ADPILQILQTIQELSRF+N
Subjt:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN

XP_022939515.1 pentatricopeptide repeat-containing protein At5g14080 isoform X2 [Cucurbita moschata]

1.3e-35

86.02

Show/hide

Query:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN
        L  AGHFLAASKLLRGL+SD+A PDSHVTLLKGFADAGEV LAKQHVEWV+ETSP +LSVIS+ELLAFLPS+P+ADPILQILQTIQELSRF+N
Subjt:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN

XP_022992821.1 pentatricopeptide repeat-containing protein At5g14080 isoform X1 [Cucurbita maxima]

1.3e-35

86.02

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Query:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN
        L  AGHFLAASKLLRGL+SD+A PDSHVTLLKGFADAGEV LAKQHVEWV+ETSP +LSVIS+ELLAFLPS+P+ADPILQILQTIQELSRF+N
Subjt:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LMX0 Uncharacterized protein

1.8e-35

84.95

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Query:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN
        L   GHFLAASKLLRGL+SDVA PDSHVTLLKGFADAGEV LAKQHVEWV+ETSP +LSVISTELLAFLPS+P+ADPIL+ILQT+QELSRFS+
Subjt:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN

A0A6J1FHE2 pentatricopeptide repeat-containing protein At5g14080 isoform X1

6.1e-36

86.02

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Query:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN
        L  AGHFLAASKLLRGL+SD+A PDSHVTLLKGFADAGEV LAKQHVEWV+ETSP +LSVIS+ELLAFLPS+P+ADPILQILQTIQELSRF+N
Subjt:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN

A0A6J1FMX2 pentatricopeptide repeat-containing protein At5g14080 isoform X2

6.1e-36

86.02

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Query:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN
        L  AGHFLAASKLLRGL+SD+A PDSHVTLLKGFADAGEV LAKQHVEWV+ETSP +LSVIS+ELLAFLPS+P+ADPILQILQTIQELSRF+N
Subjt:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN

A0A6J1JR00 pentatricopeptide repeat-containing protein At5g14080 isoform X2

6.1e-36

86.02

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Query:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN
        L  AGHFLAASKLLRGL+SD+A PDSHVTLLKGFADAGEV LAKQHVEWV+ETSP +LSVIS+ELLAFLPS+P+ADPILQILQTIQELSRF+N
Subjt:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN

A0A6J1JUL2 pentatricopeptide repeat-containing protein At5g14080 isoform X1

6.1e-36

86.02

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Query:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN
        L  AGHFLAASKLLRGL+SD+A PDSHVTLLKGFADAGEV LAKQHVEWV+ETSP +LSVIS+ELLAFLPS+P+ADPILQILQTIQELSRF+N
Subjt:  LNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSN

SwissProt top hits

e value

%identity

Alignment

Q9FMU2 Pentatricopeptide repeat-containing protein At5g14080

5.2e-08

40.24

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Query:  GHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQ
        GH   AS+LLR     +    +HV LLK  ADA EV++  +H++W++E SP L+  IS++LLA   S+   D IL  ++ I+
Subjt:  GHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQ

Arabidopsis top hits

e value

%identity

Alignment

AT5G14080.1 Tetratricopeptide repeat (TPR)-like superfamily protein

3.7e-09

40.24

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Query:  GHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQ
        GH   AS+LLR     +    +HV LLK  ADA EV++  +H++W++E SP L+  IS++LLA   S+   D IL  ++ I+
Subjt:  GHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQ

Sequences

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CDS sequence

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ATGCTAATGATGGAGCTTAATATAACTGGGATTCTGAACAATGCAGGTCATTTCCTTGCTGCTTCCAAGTTACTCCGTGGTCTCTCAAGCGACGTTGCTCGCCCCGACTC
CCATGTAACTTTACTGAAAGGTTTTGCAGATGCTGGAGAGGTTCAACTCGCTAAGCAACATGTAGAGTGGGTTAGAGAAACCTCTCCATTATTGTTGTCTGTTATATCCA
CTGAATTATTAGCATTTCTTCCTTCTACTCCAAGAGCAGATCCAATTTTACAGATTCTTCAAACAATACAAGAACTGTCACGTTTCAGCAATGATGAATGA

mRNA sequence

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Protein sequence

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MLMMELNITGILNNAGHFLAASKLLRGLSSDVARPDSHVTLLKGFADAGEVQLAKQHVEWVRETSPLLLSVISTELLAFLPSTPRADPILQILQTIQELSRFSNDE

Lag0030374 (gene) of Sponge gourd (AG-4) v1 genome