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Lag0030385 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0030385
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr8:46820769..46822887
RNA-Seq ExpressionLag0030385
SyntenyLag0030385
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016832 - aldehyde-lyase activity (molecular function)
InterPro domainsIPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041225.1 uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa]1.5e-2161.46Show/hide
Query:  FEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGVLPISLLCQEVGQE
        F+W E A+LAFE LK AM T+PVLA  D+S PF++ET ASG+GLGAVLS N  PIAFFS  LS +AQ+KSIYERELMAV G  + I  + +EV ++
Subjt:  FEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGVLPISLLCQEVGQE

KAA0054183.1 Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]9.1e-2270.37Show/hide
Query:  GFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVV
        GF W ++A+  FE LKQAM+++PVLA  DFS PF++ET ASGTGLGAVLS N RPIA+FS  LS +AQAKSIYERELMAVV
Subjt:  GFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVV

KAA0066550.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.3e-2270.24Show/hide
Query:  GFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGV
        GF W E+A+ AFE LKQAM+++PVLA  DFS PF++ET ASGTGLGAVLS N RPIA+FS  LS   QAKSIYERELMAVV  V
Subjt:  GFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGV

TYJ98047.1 Transposon Tf2-6 polyprotein [Cucumis melo var. makuwa]5.3e-2270.24Show/hide
Query:  GFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGV
        GF W E+A+ AFE LKQAM+++PVLA  DFS PF++ET ASGTGLGAVLS N RPIA+FS  LS   QAKSIYERELMAVV  V
Subjt:  GFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGV

TYK16028.1 uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa]1.5e-2161.46Show/hide
Query:  FEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGVLPISLLCQEVGQE
        F+W E A+LAFE LK AM T+PVLA  D+S PF++ET ASG+GLGAVLS N  PIAFFS  LS +AQ+KSIYERELMAV G  + I  + +EV ++
Subjt:  FEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGVLPISLLCQEVGQE

TrEMBL top hitse value%identityAlignment
A0A5A7TII1 Uncharacterized protein7.5e-2261.46Show/hide
Query:  FEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGVLPISLLCQEVGQE
        F+W E A+LAFE LK AM T+PVLA  D+S PF++ET ASG+GLGAVLS N  PIAFFS  LS +AQ+KSIYERELMAV G  + I  + +EV ++
Subjt:  FEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGVLPISLLCQEVGQE

A0A5A7VHA7 Ty3/gypsy retrotransposon protein2.6e-2270.24Show/hide
Query:  GFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGV
        GF W E+A+ AFE LKQAM+++PVLA  DFS PF++ET ASGTGLGAVLS N RPIA+FS  LS   QAKSIYERELMAVV  V
Subjt:  GFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGV

A0A5D3BFZ9 Transposon Tf2-6 polyprotein2.6e-2270.24Show/hide
Query:  GFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGV
        GF W E+A+ AFE LKQAM+++PVLA  DFS PF++ET ASGTGLGAVLS N RPIA+FS  LS   QAKSIYERELMAVV  V
Subjt:  GFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGV

A0A5D3CUI1 Transposon Ty3-G Gag-Pol polyprotein4.4e-2270.37Show/hide
Query:  GFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVV
        GF W ++A+  FE LKQAM+++PVLA  DFS PF++ET ASGTGLGAVLS N RPIA+FS  LS +AQAKSIYERELMAVV
Subjt:  GFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVV

A0A5D3CXP0 Uncharacterized protein7.5e-2261.46Show/hide
Query:  FEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGVLPISLLCQEVGQE
        F+W E A+LAFE LK AM T+PVLA  D+S PF++ET ASG+GLGAVLS N  PIAFFS  LS +AQ+KSIYERELMAV G  + I  + +EV ++
Subjt:  FEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGVLPISLLCQEVGQE

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.3e-0732.97Show/hide
Query:  LNKGGGFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQ-----RPIAFFSHTLSSQAQAKSIYERELMAVV
        L K   ++WT   + A E +KQ +++ PVL H DFS+  ++ET AS   +GAVLS         P+ ++S  +S      S+ ++E++A++
Subjt:  LNKGGGFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQ-----RPIAFFSHTLSSQAQAKSIYERELMAVV

P0CT41 Transposon Tf2-12 polyprotein2.3e-0732.97Show/hide
Query:  LNKGGGFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQ-----RPIAFFSHTLSSQAQAKSIYERELMAVV
        L K   ++WT   + A E +KQ +++ PVL H DFS+  ++ET AS   +GAVLS         P+ ++S  +S      S+ ++E++A++
Subjt:  LNKGGGFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQ-----RPIAFFSHTLSSQAQAKSIYERELMAVV

P10401 Retrovirus-related Pol polyprotein from transposon gypsy4.5e-0838.46Show/hide
Query:  MEEHLNKGGGFEWTEEASLAFEPLKQAMMTLPV-LAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVV
        + +H++K    E+ E    AF+ L+  + +  V L + DF +PF + T AS +G+GAVLS   RPI   S TL    Q  +  EREL+A+V
Subjt:  MEEHLNKGGGFEWTEEASLAFEPLKQAMMTLPV-LAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVV

P20825 Retrovirus-related Pol polyprotein from transposon 2973.5e-0846.48Show/hide
Query:  AFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVV
        AFE LK  ++  P+L   DF + FV+ T AS   LGAVLS N  PI+F S TL+      S  E+EL+A+V
Subjt:  AFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVV

Q9UR07 Transposon Tf2-11 polyprotein2.3e-0732.97Show/hide
Query:  LNKGGGFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQ-----RPIAFFSHTLSSQAQAKSIYERELMAVV
        L K   ++WT   + A E +KQ +++ PVL H DFS+  ++ET AS   +GAVLS         P+ ++S  +S      S+ ++E++A++
Subjt:  LNKGGGFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQ-----RPIAFFSHTLSSQAQAKSIYERELMAVV

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein3.1e-0455Show/hide
Query:  LNKGGGFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFV
        L K    +WTE A+LAF+ LK A+ TLPVLA  D   PFV
Subjt:  LNKGGGFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAACATTTGAACAAAGGGGGAGGATTCGAATGGACAGAGGAGGCCTCGTTGGCTTTTGAACCACTCAAACAAGCCATGATGACTCTTCCTGTCTTAGCTCATGC
AGATTTCAGTCAACCATTTGTAGTAGAAACATACGCCTCAGGGACGGGATTGGGGGCAGTTTTATCTCTGAACCAACGACCGATTGCTTTCTTCAGCCATACCTTGTCAT
CTCAGGCACAAGCGAAGTCTATTTACGAGAGAGAATTGATGGCTGTGGTTGGAGGGGTCTTGCCCATCAGCCTACTTTGCCAAGAGGTGGGGCAGGAGCGCAACGACCTA
GCCCAAACCCACTTAGATGAAGCTGCAAGGCACCAGACCGACCCTGAGAGGAACGTGCCCACGAGGGCACCGCCAGATGTTGTAGATGAACTTCCCCAAGAAGAAGTTGA
GTATATCATAGCTGACCGCACCATGGGCGGGACGGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAACATTTGAACAAAGGGGGAGGATTCGAATGGACAGAGGAGGCCTCGTTGGCTTTTGAACCACTCAAACAAGCCATGATGACTCTTCCTGTCTTAGCTCATGC
AGATTTCAGTCAACCATTTGTAGTAGAAACATACGCCTCAGGGACGGGATTGGGGGCAGTTTTATCTCTGAACCAACGACCGATTGCTTTCTTCAGCCATACCTTGTCAT
CTCAGGCACAAGCGAAGTCTATTTACGAGAGAGAATTGATGGCTGTGGTTGGAGGGGTCTTGCCCATCAGCCTACTTTGCCAAGAGGTGGGGCAGGAGCGCAACGACCTA
GCCCAAACCCACTTAGATGAAGCTGCAAGGCACCAGACCGACCCTGAGAGGAACGTGCCCACGAGGGCACCGCCAGATGTTGTAGATGAACTTCCCCAAGAAGAAGTTGA
GTATATCATAGCTGACCGCACCATGGGCGGGACGGGATGA
Protein sequenceShow/hide protein sequence
MEEHLNKGGGFEWTEEASLAFEPLKQAMMTLPVLAHADFSQPFVVETYASGTGLGAVLSLNQRPIAFFSHTLSSQAQAKSIYERELMAVVGGVLPISLLCQEVGQERNDL
AQTHLDEAARHQTDPERNVPTRAPPDVVDELPQEEVEYIIADRTMGGTG