CuGenDBv2

Gene ID	Lag0030470
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	DEAD-box ATP-dependent RNA helicase FANCM isoform X2
Genome location	chr8:47522123..47523295
RNA-Seq Expression	Lag0030470
Synteny	Lag0030470
Gene Ontology terms	GO:0006281 - DNA repair (biological process) GO:0032508 - DNA duplex unwinding (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003677 - DNA binding (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016787 - hydrolase activity (molecular function) GO:0043138 - 3'-5' DNA helicase activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022993247.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X1 [Cucurbita maxima]

8.0e-50

83.46

Show/hide

Query:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK
        GNVNQS TMHSEHVKM R PEVVISTTGG P  TEVESR RNLTFCASESVPKLNLD+ FELVVAGRES+SDV         DDEFYEGLDLDAVEAQAK
Subjt:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK

Query:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI
        LLLEKKVELPQMMVTQ  KNFDL TSPSFDLGI
Subjt:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI

XP_022993248.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X2 [Cucurbita maxima]

8.0e-50

83.46

Show/hide

Query:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK
        GNVNQS TMHSEHVKM R PEVVISTTGG P  TEVESR RNLTFCASESVPKLNLD+ FELVVAGRES+SDV         DDEFYEGLDLDAVEAQAK
Subjt:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK

Query:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI
        LLLEKKVELPQMMVTQ  KNFDL TSPSFDLGI
Subjt:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI

XP_022993249.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X3 [Cucurbita maxima]

8.0e-50

83.46

Show/hide

Query:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK
        GNVNQS TMHSEHVKM R PEVVISTTGG P  TEVESR RNLTFCASESVPKLNLD+ FELVVAGRES+SDV         DDEFYEGLDLDAVEAQAK
Subjt:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK

Query:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI
        LLLEKKVELPQMMVTQ  KNFDL TSPSFDLGI
Subjt:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI

XP_022993251.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X5 [Cucurbita maxima]

8.0e-50

83.46

Show/hide

Query:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK
        GNVNQS TMHSEHVKM R PEVVISTTGG P  TEVESR RNLTFCASESVPKLNLD+ FELVVAGRES+SDV         DDEFYEGLDLDAVEAQAK
Subjt:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK

Query:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI
        LLLEKKVELPQMMVTQ  KNFDL TSPSFDLGI
Subjt:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI

XP_022993254.1 DEAD-box ATP-dependent RNA helicase FANCM isoform X8 [Cucurbita maxima]

8.0e-50

83.46

Show/hide

Query:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK
        GNVNQS TMHSEHVKM R PEVVISTTGG P  TEVESR RNLTFCASESVPKLNLD+ FELVVAGRES+SDV         DDEFYEGLDLDAVEAQAK
Subjt:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK

Query:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI
        LLLEKKVELPQMMVTQ  KNFDL TSPSFDLGI
Subjt:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI

TrEMBL top hits

e value

%identity

Alignment

A0A6J1JS92 DEAD-box ATP-dependent RNA helicase FANCM isoform X1

3.9e-50

83.46

Show/hide

Query:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK
        GNVNQS TMHSEHVKM R PEVVISTTGG P  TEVESR RNLTFCASESVPKLNLD+ FELVVAGRES+SDV         DDEFYEGLDLDAVEAQAK
Subjt:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK

Query:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI
        LLLEKKVELPQMMVTQ  KNFDL TSPSFDLGI
Subjt:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI

A0A6J1JS97 DEAD-box ATP-dependent RNA helicase FANCM isoform X6

3.9e-50

83.46

Show/hide

Query:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK
        GNVNQS TMHSEHVKM R PEVVISTTGG P  TEVESR RNLTFCASESVPKLNLD+ FELVVAGRES+SDV         DDEFYEGLDLDAVEAQAK
Subjt:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK

Query:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI
        LLLEKKVELPQMMVTQ  KNFDL TSPSFDLGI
Subjt:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI

A0A6J1JVT6 DEAD-box ATP-dependent RNA helicase FANCM isoform X5

3.9e-50

83.46

Show/hide

Query:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK
        GNVNQS TMHSEHVKM R PEVVISTTGG P  TEVESR RNLTFCASESVPKLNLD+ FELVVAGRES+SDV         DDEFYEGLDLDAVEAQAK
Subjt:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK

Query:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI
        LLLEKKVELPQMMVTQ  KNFDL TSPSFDLGI
Subjt:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI

A0A6J1K1N4 DEAD-box ATP-dependent RNA helicase FANCM isoform X2

3.9e-50

83.46

Show/hide

Query:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK
        GNVNQS TMHSEHVKM R PEVVISTTGG P  TEVESR RNLTFCASESVPKLNLD+ FELVVAGRES+SDV         DDEFYEGLDLDAVEAQAK
Subjt:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK

Query:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI
        LLLEKKVELPQMMVTQ  KNFDL TSPSFDLGI
Subjt:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI

A0A6J1K1P1 DEAD-box ATP-dependent RNA helicase FANCM isoform X7

3.9e-50

83.46

Show/hide

Query:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK
        GNVNQS TMHSEHVKM R PEVVISTTGG P  TEVESR RNLTFCASESVPKLNLD+ FELVVAGRES+SDV         DDEFYEGLDLDAVEAQAK
Subjt:  GNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDDDDEFYEGLDLDAVEAQAK

Query:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI
        LLLEKKVELPQMMVTQ  KNFDL TSPSFDLGI
Subjt:  LLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI

SwissProt top hits

e value

%identity

Alignment

I3XHK1 DEAD-box ATP-dependent RNA helicase FANCM

7.3e-06

29.94

Show/hide

Query:  VNQSQTMHSEHVKMNRIPEVVISTTG------GSPRVTEV--ESRTRNLTFCASESVPKLNLDKRF--ELVVAGRESMSDVDANGNVF----DDDDEFYE
        +N+S++   + +   R P+   S +       G+  V ++  +SR R  + C S + P +NL+ +F        +ES   V +N        DDDD F+ 
Subjt:  VNQSQTMHSEHVKMNRIPEVVISTTG------GSPRVTEV--ESRTRNLTFCASESVPKLNLDKRF--ELVVAGRESMSDVDANGNVF----DDDDEFYE

Query:  GLDLDAVEAQAKLLLEKK------------VELPQMMVTQQQKNFDLDTSPSFDLGI
         LD DA+EAQA LLL K+            +  P M   Q+    + D +PSFDLG+
Subjt:  GLDLDAVEAQAKLLLEKK------------VELPQMMVTQQQKNFDLDTSPSFDLGI

Arabidopsis top hits

e value

%identity

Alignment

AT1G35530.1 DEAD/DEAH box RNA helicase family protein

5.2e-07

29.94

Show/hide

Query:  VNQSQTMHSEHVKMNRIPEVVISTTG------GSPRVTEV--ESRTRNLTFCASESVPKLNLDKRF--ELVVAGRESMSDVDANGNVF----DDDDEFYE
        +N+S++   + +   R P+   S +       G+  V ++  +SR R  + C S + P +NL+ +F        +ES   V +N        DDDD F+ 
Subjt:  VNQSQTMHSEHVKMNRIPEVVISTTG------GSPRVTEV--ESRTRNLTFCASESVPKLNLDKRF--ELVVAGRESMSDVDANGNVF----DDDDEFYE

Query:  GLDLDAVEAQAKLLLEKK------------VELPQMMVTQQQKNFDLDTSPSFDLGI
         LD DA+EAQA LLL K+            +  P M   Q+    + D +PSFDLG+
Subjt:  GLDLDAVEAQAKLLLEKK------------VELPQMMVTQQQKNFDLDTSPSFDLGI

AT1G35530.2 DEAD/DEAH box RNA helicase family protein

5.2e-07

29.94

Show/hide

Query:  VNQSQTMHSEHVKMNRIPEVVISTTG------GSPRVTEV--ESRTRNLTFCASESVPKLNLDKRF--ELVVAGRESMSDVDANGNVF----DDDDEFYE
        +N+S++   + +   R P+   S +       G+  V ++  +SR R  + C S + P +NL+ +F        +ES   V +N        DDDD F+ 
Subjt:  VNQSQTMHSEHVKMNRIPEVVISTTG------GSPRVTEV--ESRTRNLTFCASESVPKLNLDKRF--ELVVAGRESMSDVDANGNVF----DDDDEFYE

Query:  GLDLDAVEAQAKLLLEKK------------VELPQMMVTQQQKNFDLDTSPSFDLGI
         LD DA+EAQA LLL K+            +  P M   Q+    + D +PSFDLG+
Subjt:  GLDLDAVEAQAKLLLEKK------------VELPQMMVTQQQKNFDLDTSPSFDLGI

Sequences

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CDS sequence

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ATGACAAAACCACCAATTACTGGAAAGACGTTCTTTGCTAAGTCAATCACCATTCAGGAGGCTGACTTCACCCCTCGCGACCCAGGAAATGTCAATCAATCTCAGACAAT
GCATTCAGAACATGTCAAAATGAACCGTATCCCAGAAGTTGTAATTTCTACAACTGGTGGCAGCCCAAGAGTGACAGAAGTAGAAAGCAGGACTCGAAATTTGACATTTT
GTGCATCAGAATCTGTTCCTAAACTTAATTTGGATAAACGGTTTGAGTTAGTGGTGGCAGGAAGAGAATCGATGAGCGATGTGGACGCAAATGGAAATGTGTTCGATGAT
GATGATGAGTTTTATGAAGGTTTAGACCTTGATGCAGTCGAGGCCCAGGCAAAATTGCTCCTTGAAAAGAAAGTTGAGTTGCCTCAGATGATGGTTACTCAGCAACAGAA
AAATTTTGATCTTGACACTTCTCCATCTTTTGATCTTGGGATATGA

mRNA sequence

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Protein sequence

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MTKPPITGKTFFAKSITIQEADFTPRDPGNVNQSQTMHSEHVKMNRIPEVVISTTGGSPRVTEVESRTRNLTFCASESVPKLNLDKRFELVVAGRESMSDVDANGNVFDD
DDEFYEGLDLDAVEAQAKLLLEKKVELPQMMVTQQQKNFDLDTSPSFDLGI

Lag0030470 (gene) of Sponge gourd (AG-4) v1 genome