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Lag0030649 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0030649
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr11:126758..127105
RNA-Seq ExpressionLag0030649
SyntenyLag0030649
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO90013.1 reverse transcriptase [Corchorus capsularis]1.5e-2653.7Show/hide
Query:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY
        M CV  VS+S+LVNG Q     P RGIRQGDPLSPYLFL+C EGF++LL   E + ++ G+   +N+P +SHLFFADDSL+FL+AS  EC+ +K +L+++
Subjt:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY

Query:  EEATAQRL
        E A+ Q++
Subjt:  EEATAQRL
XP_023880426.1 uncharacterized protein LOC111992797 [Quercus suber]5.7e-2652.78Show/hide
Query:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY
        M C+  VS+SV++NG    +  P RG+RQGDPLS YLFL+CAEGF+ L+N   S + L+GI   + +P +SHLFFADDS++F KA+  ECN LKE+L +Y
Subjt:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY

Query:  EEATAQRL
        E A+ Q++
Subjt:  EEATAQRL
XP_027086414.1 uncharacterized protein LOC113708145 [Coffea arabica]4.4e-2652.17Show/hide
Query:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY
        M C+  VSFS  +NG  +E   P RGIRQGDPLSPYLFLIC+EGF++LL R     N++G++ +++ PS++HLFFADDSL+F KA+S+E   LK +L+VY
Subjt:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY

Query:  EEATAQRLILRSLNV
        E+ + Q + L   +V
Subjt:  EEATAQRLILRSLNV
XP_027185015.1 uncharacterized protein LOC113783152 [Coffea eugenioides]2.0e-2652.17Show/hide
Query:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY
        M C+  VSFS  +NG  +E   P RGIRQGDPLSPYLFLIC+EGF++LL R     N++G++ +++ PS++HLFFADDSL+F KA+S+E   LK +L+VY
Subjt:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY

Query:  EEATAQRLILRSLNV
        E+ + Q + L   +V
Subjt:  EEATAQRLILRSLNV
XP_030948949.1 uncharacterized protein LOC115972854 [Quercus lobata]6.8e-2757.41Show/hide
Query:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY
        M C+  VS+S+LVNG+  ESF P RG+RQGDPLSPYLFLIC+E    LLN+E    ++ G+   K  P L+HLFFADDSLVF KAS  EC  ++ VL VY
Subjt:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY

Query:  EEATAQRL
        E+A+ Q+L
Subjt:  EEATAQRL
TrEMBL top hitse value%identityAlignment
A0A1R3J5A5 Reverse transcriptase7.3e-2753.7Show/hide
Query:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY
        M CV  VS+S+LVNG Q     P RGIRQGDPLSPYLFL+C EGF++LL   E + ++ G+   +N+P +SHLFFADDSL+FL+AS  EC+ +K +L+++
Subjt:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY

Query:  EEATAQRL
        E A+ Q++
Subjt:  EEATAQRL
A0A2N9FM05 Reverse transcriptase domain-containing protein3.3e-2755.56Show/hide
Query:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY
        M CV  +SFS+L+NG  +    P RG+RQGDPLSPYLFLICAEGFT L+    +   + G+  N+  P  SHLFFADDS++F KAS +EC  LK+VLK+Y
Subjt:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY

Query:  EEATAQRL
        E+A+ Q+L
Subjt:  EEATAQRL
A0A2N9G3M1 Uncharacterized protein5.6e-2752.78Show/hide
Query:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY
        M C+  VS+S+L+NG       P RG+RQGDPLSPYLFLICAEGFT+L+ + E+   + GI  ++  P  SHLFFADDS++F +A  +EC  L+E+LK+Y
Subjt:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY

Query:  EEATAQRL
        E+A+ Q+L
Subjt:  EEATAQRL
A0A2N9I4W7 Reverse transcriptase domain-containing protein2.5e-2752.78Show/hide
Query:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY
        M C+ +VS+S+L+NG       P RG+RQGDPLSPYLFLICAEGFT+L+ + E+   + GI  ++  P  SHLFFADDS++F +A  +EC  L+E+LK+Y
Subjt:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY

Query:  EEATAQRL
        E+A+ Q+L
Subjt:  EEATAQRL
A0A2N9IKR1 Reverse transcriptase domain-containing protein5.6e-2752.78Show/hide
Query:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY
        M C+  VS+S+L+NG       P RG+RQGDPLSPYLFLICAEGFT+L+ + E+   + GI  ++  P  SHLFFADDS++F +A  +EC  L+E+LK+Y
Subjt:  MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVY

Query:  EEATAQRL
        E+A+ Q+L
Subjt:  EEATAQRL
SwissProt top hitse value%identityAlignment
P11369 LINE-1 retrotransposable element ORF2 protein2.2e-0428.28Show/hide
Query:  SVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVYEEATAQRL
        ++ VNG + E+     G RQG PLSPYLF I  E     + +++    + GI+  K    +S L  ADD +V++         L  ++  + E    ++
Subjt:  SVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVYEEATAQRL
P92555 Uncharacterized mitochondrial protein AtMg012508.9e-1450Show/hide
Query:  LVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDS
        ++NG  Q    P RG+RQGDPLSPYLF++C E  + L  R +    L GIR + NSP ++HL FADD+
Subjt:  LVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDS
Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)6.3e-1550Show/hide
Query:  LVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDS
        ++NG  Q    P RG+RQGDPLSPYLF++C E  + L  R +    L GIR + NSP ++HL FADD+
Subjt:  LVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTGTGTAGAATTGGTTTCCTTCTCAGTTCTAGTTAATGGGAACCAACAGGAGAGCTTTAAGCCATATAGGGGTATTAGGCAGGGCGACCCTTTATCGCCATATTT
GTTTCTCATTTGCGCTGAAGGATTCACGACGTTACTTAACAGGGAAGAATCTCTCTCTAACTTGTCTGGCATTCGTTTCAATAAGAATAGTCCCTCACTTTCTCATCTTT
TCTTTGCAGATGATAGCCTGGTGTTCCTAAAGGCCTCGAGCAAGGAGTGCAATACACTGAAGGAGGTGCTGAAAGTCTACGAAGAAGCGACTGCCCAGCGATTAATCTTG
AGAAGTCTGAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTGTGTAGAATTGGTTTCCTTCTCAGTTCTAGTTAATGGGAACCAACAGGAGAGCTTTAAGCCATATAGGGGTATTAGGCAGGGCGACCCTTTATCGCCATATTT
GTTTCTCATTTGCGCTGAAGGATTCACGACGTTACTTAACAGGGAAGAATCTCTCTCTAACTTGTCTGGCATTCGTTTCAATAAGAATAGTCCCTCACTTTCTCATCTTT
TCTTTGCAGATGATAGCCTGGTGTTCCTAAAGGCCTCGAGCAAGGAGTGCAATACACTGAAGGAGGTGCTGAAAGTCTACGAAGAAGCGACTGCCCAGCGATTAATCTTG
AGAAGTCTGAATGTTTGA
Protein sequenceShow/hide protein sequence
MSCVELVSFSVLVNGNQQESFKPYRGIRQGDPLSPYLFLICAEGFTTLLNREESLSNLSGIRFNKNSPSLSHLFFADDSLVFLKASSKECNTLKEVLKVYEEATAQRLIL
RSLNV