CuGenDBv2

Gene ID	Lag0030653
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrotran_gag_3 domain-containing protein
Genome location	chr11:139813..140373
RNA-Seq Expression	Lag0030653
Synteny	Lag0030653
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0049700.1 T4.5 [Cucumis melo var. makuwa]

1.3e-14

74.14

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Query:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA
        I+DKLANVS+ +++EDL+IYALNGLP +YNTF+TSMRTRS  VTF+ELHVLL++EESA
Subjt:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA

KAG6588985.1 Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia]

1.8e-16

81.03

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Query:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA
        I+DKLANVS+VV+DEDL+IYALNGLP +YNTF+TSMRTRS  VTF+ELHVLLK+EESA
Subjt:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA

KAG7015254.1 hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.8e-16

81.03

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Query:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA
        I+DKLANVS+VV+DEDL+IYALNGLP +YNTF+TSMRTRS  VTF+ELHVLLK+EESA
Subjt:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA

XP_008448007.1 PREDICTED: uncharacterized protein LOC103490319 isoform X2 [Cucumis melo]

1.3e-14

74.14

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Query:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA
        I+DKLANVS+ +++EDL+IYALNGLP +YNTF+TSMRTRS  VTF+ELHVLL++EESA
Subjt:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA

XP_008448008.1 PREDICTED: uncharacterized protein LOC103490319 isoform X3 [Cucumis melo]

1.3e-14

74.14

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Query:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA
        I+DKLANVS+ +++EDL+IYALNGLP +YNTF+TSMRTRS  VTF+ELHVLL++EESA
Subjt:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BI58 uncharacterized protein LOC103490319 isoform X2

6.1e-15

74.14

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Query:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA
        I+DKLANVS+ +++EDL+IYALNGLP +YNTF+TSMRTRS  VTF+ELHVLL++EESA
Subjt:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA

A0A1S3BIR3 uncharacterized protein LOC103490319 isoform X3

6.1e-15

74.14

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Query:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA
        I+DKLANVS+ +++EDL+IYALNGLP +YNTF+TSMRTRS  VTF+ELHVLL++EESA
Subjt:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA

A0A1S4DWT9 uncharacterized protein LOC103490319 isoform X1

6.1e-15

74.14

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Query:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA
        I+DKLANVS+ +++EDL+IYALNGLP +YNTF+TSMRTRS  VTF+ELHVLL++EESA
Subjt:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA

A0A5D3CLI6 T4.5

6.1e-15

74.14

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Query:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA
        I+DKLANVS+ +++EDL+IYALNGLP +YNTF+TSMRTRS  VTF+ELHVLL++EESA
Subjt:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA

A0A6J1DT57 uncharacterized protein LOC111024149

2.3e-14

75.86

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Query:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA
        ++DKL NVS VV DEDL+IY LNGLP  YN F+TSMRTRS SVTFDELHVL+KSEE A
Subjt:  IEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESA

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGATGTCGATTTTGAAGGCTCACAAGATTTTTGGATTTCTCGATGGTTCGTCAGTCGCTCTGGCCGAATTTATCGAGGATAAACTTGCAAATGTCTCGTCTGTTGTACA
TGATGAGGATCTGATGATTTATGCTCTCAACGGCCTACCGGTTGATTACAACACTTTTCAAACATCAATGCGCACTCGTTCTGGTTCTGTGACTTTTGACGAACTTCATG
TTCTCCTCAAGTCCGAGGAATCTGCACGGAGAAACAGTCCAAGCATGAGGATCTTACGGTTCAGCCAACAGCTATGCTTGCCTCTCAGAACTCTTCATCTCATAATGTTT
CTAACTCAAATTCGTCCTTTTCTGGTGGCTTTCAAGGACGCGGAAGAGGTCGCAATTCAGGAAGAGGCAGATCCAATAATTTTTCACATCTTCCATCTTCTGGCTTCAGT
CGTGGTCGTGGAGGATCTACTCCTGATGCTCGAGTTTCTTGCCAAATTTGTAATCGTCCTGGTCATCAGGCCCTTGACTGCTACTATCACTTCCAAGGACGACATCCTCC
ACCACAATTGA

mRNA sequence

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Protein sequence

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MMSILKAHKIFGFLDGSSVALAEFIEDKLANVSSVVHDEDLMIYALNGLPVDYNTFQTSMRTRSGSVTFDELHVLLKSEESARRNSPSMRILRFSQQLCLPLRTLHLIMF
LTQIRPFLVAFKDAEEVAIQEEADPIIFHIFHLLASVVVVEDLLLMLEFLAKFVIVLVIRPLTATITSKDDILHHN

Lag0030653 (gene) of Sponge gourd (AG-4) v1 genome