CuGenDBv2

Gene ID	Lag0030686
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	SKP1-like protein 21 isoform X1
Genome location	chr11:403517..405012
RNA-Seq Expression	Lag0030686
Synteny	Lag0030686
Gene Ontology terms	GO:0016567 - protein ubiquitination (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0097602 - cullin family protein binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0042606.1 SKP1-like protein 21 isoform X1 [Cucumis melo var. makuwa]

3.2e-23

65.98

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Query:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFTIAQLTRK--------------IRKTWILGEATVGNLEGSKSLQDFSVNGPWEDL
        EVEDFARRLNSDWPERVQEILSLGQER LVTVL GNGSSPRFT     R+                +     + TVGNLEGSKSLQDFSVNG WEDL
Subjt:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFTIAQLTRK--------------IRKTWILGEATVGNLEGSKSLQDFSVNGPWEDL

TYK06009.1 SKP1-like protein 21 isoform X1 [Cucumis melo var. makuwa]

3.2e-23

65.98

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Query:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFTIAQLTRK--------------IRKTWILGEATVGNLEGSKSLQDFSVNGPWEDL
        EVEDFARRLNSDWPERVQEILSLGQER LVTVL GNGSSPRFT     R+                +     + TVGNLEGSKSLQDFSVNG WEDL
Subjt:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFTIAQLTRK--------------IRKTWILGEATVGNLEGSKSLQDFSVNGPWEDL

XP_022158934.1 SKP1-like protein 21 isoform X1 [Momordica charantia]

9.3e-15

100

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Query:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFT
        EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFT
Subjt:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFT

XP_022158941.1 SKP1-like protein 21 isoform X2 [Momordica charantia]

4.2e-15

97.78

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Query:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFTIA
        EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFT A
Subjt:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFTIA

XP_022158945.1 SKP1-like protein 21 isoform X3 [Momordica charantia]

9.3e-15

100

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Query:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFT
        EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFT
Subjt:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFT

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TKX5 SKP1-like protein 21 isoform X1

1.5e-23

65.98

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Query:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFTIAQLTRK--------------IRKTWILGEATVGNLEGSKSLQDFSVNGPWEDL
        EVEDFARRLNSDWPERVQEILSLGQER LVTVL GNGSSPRFT     R+                +     + TVGNLEGSKSLQDFSVNG WEDL
Subjt:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFTIAQLTRK--------------IRKTWILGEATVGNLEGSKSLQDFSVNGPWEDL

A0A5D3C6J7 SKP1-like protein 21 isoform X1

1.5e-23

65.98

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Query:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFTIAQLTRK--------------IRKTWILGEATVGNLEGSKSLQDFSVNGPWEDL
        EVEDFARRLNSDWPERVQEILSLGQER LVTVL GNGSSPRFT     R+                +     + TVGNLEGSKSLQDFSVNG WEDL
Subjt:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFTIAQLTRK--------------IRKTWILGEATVGNLEGSKSLQDFSVNGPWEDL

A0A6J1DX90 SKP1-like protein 21 isoform X3

4.5e-15

100

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Query:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFT
        EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFT
Subjt:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFT

A0A6J1E0W6 SKP1-like protein 21 isoform X1

4.5e-15

100

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Query:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFT
        EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFT
Subjt:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFT

A0A6J1E2F2 SKP1-like protein 21 isoform X2

2.0e-15

97.78

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Query:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFTIA
        EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFT A
Subjt:  EVEDFARRLNSDWPERVQEILSLGQERKLVTVLNGNGSSPRFTIA

SwissProt top hits

e value

%identity

Alignment

Q8LF97 SKP1-like protein 21

7.0e-05

59.09

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Query:  EVEDFARRLNSDWPERVQEILSLGQERKLVTV-LNGNGSSPRFT
        EVEDFARRLNS W      +LS+GQER+ V   +NGNG+S R T
Subjt:  EVEDFARRLNSDWPERVQEILSLGQERKLVTV-LNGNGSSPRFT

Arabidopsis top hits

e value

%identity

Alignment

AT2G45950.1 SKP1-like 20

3.5e-04

52.27

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Query:  EVEDFARRLNSDWPERVQEILSLGQERKLVTV-LNGNGSSPRFT
        EVEDFA+RLNS+W      + SLG+ER+ V   +NGNG++ R T
Subjt:  EVEDFARRLNSDWPERVQEILSLGQERKLVTV-LNGNGSSPRFT

AT2G45950.2 SKP1-like 20

3.5e-04

52.27

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Query:  EVEDFARRLNSDWPERVQEILSLGQERKLVTV-LNGNGSSPRFT
        EVEDFA+RLNS+W      + SLG+ER+ V   +NGNG++ R T
Subjt:  EVEDFARRLNSDWPERVQEILSLGQERKLVTV-LNGNGSSPRFT

AT3G61415.1 SKP1-like 21

4.9e-06

59.09

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Query:  EVEDFARRLNSDWPERVQEILSLGQERKLVTV-LNGNGSSPRFT
        EVEDFARRLNS W      +LS+GQER+ V   +NGNG+S R T
Subjt:  EVEDFARRLNSDWPERVQEILSLGQERKLVTV-LNGNGSSPRFT

AT3G61415.2 SKP1-like 21

4.9e-06

59.09

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Query:  EVEDFARRLNSDWPERVQEILSLGQERKLVTV-LNGNGSSPRFT
        EVEDFARRLNS W      +LS+GQER+ V   +NGNG+S R T
Subjt:  EVEDFARRLNSDWPERVQEILSLGQERKLVTV-LNGNGSSPRFT

Sequences

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CDS sequence

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ATGATATTGATATCCTTCCCAAATACACAAGAACAAGAAACCCAGCAATTCGAGAGGCTGGTTCTCTCCCTTTCAGACCACTCTCAGCCTAAGACAAGATGTTCCTTGCC
TTCCCACATTCCCTGCTACCCGAATACATCAGGCCCTCACTCCCACATTCCCCATGGTCCCCACATTCTCTCTCTCTCTCACTGTTTTGTTTCTTTCCCAGTACTACCCT
TCCTCATGGAAGTAGAAGACTTTGCTAGAAGATTGAATTCAGATTGGCCAGAAAGAGTGCAAGAAATTTTATCGCTAGGCCAAGAAAGAAAACTGGTGACAGTATTAAAT
GGCAATGGCTCATCACCCAGATTCACAATAGCTCAGTTGACTCGAAAGATTCGAAAGACCTGGATTCTGGGAGAAGCTACTGTTGGAAACTTGGAAGGAAGCAAGAGTTT
GCAAGATTTCAGTGTAAATGGTCCATGGGAAGATTTACAGGCATTATTACATGAGGAAGATGCAAATTTTTGTTTTGTGGGATTTTGTATGGCAGAGAAGTAA

mRNA sequence

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Protein sequence

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MILISFPNTQEQETQQFERLVLSLSDHSQPKTRCSLPSHIPCYPNTSGPHSHIPHGPHILSLSHCFVSFPVLPFLMEVEDFARRLNSDWPERVQEILSLGQERKLVTVLN
GNGSSPRFTIAQLTRKIRKTWILGEATVGNLEGSKSLQDFSVNGPWEDLQALLHEEDANFCFVGFCMAEK

Lag0030686 (gene) of Sponge gourd (AG-4) v1 genome