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Lag0030704 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0030704
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr11:561053..562929
RNA-Seq ExpressionLag0030704
SyntenyLag0030704
Gene Ontology termsGO:0034641 - cellular nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0046483 - heterocycle metabolic process (biological process)
GO:1901360 - organic cyclic compound metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsIPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GEV05704.1 retrotransposable element Tf2 [Tanacetum cinerariifolium]1.0e-2038.38Show/hide
Query:  LVDNGATHNFITLKLVQELELSLS-----------------------------EIFRSQVTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLWDDVPSE
        L+D GATHN ++++LV +L L +S                              + R+ V+LKS+V++L+ EK+ FLVE+   Q    + E    +   +
Subjt:  LVDNGATHNFITLKLVQELELSLS-----------------------------EIFRSQVTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLWDDVPSE

Query:  IRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIEKLVEKMLAVGIIQPSSSTFSRLILLVKKKDGS
        I  +   +  +      L P+R+ +H+I L  GT PI+VRPYR+   QK+EIEKLV++MLA G+IQPSSS +S  +LLVKKKDGS
Subjt:  IRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIEKLVEKMLAVGIIQPSSSTFSRLILLVKKKDGS

GEX24785.1 putative mitochondrial protein [Tanacetum cinerariifolium]1.6e-2431.15Show/hide
Query:  EQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKEDYRDGQRMSVGRKTAERRSGGWTAFYGPYQISENHQVD--GFNWSHRGYFLVDN
        E++ A VL L+G  L W  W   Q    +WE+ +R LL RF  ++++  D        K          + +    I+  H +   G    +    L+D 
Subjt:  EQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKEDYRDGQRMSVGRKTAERRSGGWTAFYGPYQISENHQVD--GFNWSHRGYFLVDN

Query:  GATHNFITLKLVQEL-----------------------------ELSLS------------------------EIFRSQVTLKSLVKALKLEKQGFLVEL
        GATHNF++++LV++L                             EL+L                         E+ R++ +L+SL +A+    + +L+ L
Subjt:  GATHNFITLKLVQEL-----------------------------ELSLS------------------------EIFRSQVTLKSLVKALKLEKQGFLVEL

Query:  NVMQQHSVKNEGLWDDVPSEIRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIEKLVEKMLAVGIIQPSSSTFSRLILLVK
          ++  S     +    P+ + S+   ++ I   L  L P R+ +HAI L  GT PINV PYR+ Q QKDEIEKLV +ML  GII+PS+S FS L+LLVK
Subjt:  NVMQQHSVKNEGLWDDVPSEIRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIEKLVEKMLAVGIIQPSSSTFSRLILLVK

Query:  KKDGS
        KKDGS
Subjt:  KKDGS

RVW54082.1 Retrovirus-related Pol polyprotein from transposon 297 [Vitis vinifera]1.4e-2045.31Show/hide
Query:  RSQVTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLWDDVPSEIRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIEKLV
        R++V+LK++ +AL+   QG  VEL      S  +EG+  +VP  ++ V   H  I + +  L P+R++DHAI+L+ G +P+NVRPYR+    K+EIE+LV
Subjt:  RSQVTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLWDDVPSEIRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIEKLV

Query:  EKMLAVGIIQPSSSTFSRLILLVKKKDG
        ++ML  GI++PS S+FS  +LLVKKKDG
Subjt:  EKMLAVGIIQPSSSTFSRLILLVKKKDG

RVW54082.1 Retrovirus-related Pol polyprotein from transposon 297 [Vitis vinifera]1.7e-0240Show/hide
Query:  DLWNFVGN-ISELVAQMEEEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKE
        D W F  N    +    EEE++ A  + LDG  L W+ W   +   GSWE  +R LL RF PT+E
Subjt:  DLWNFVGN-ISELVAQMEEEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKE

RVW54082.1 Retrovirus-related Pol polyprotein from transposon 297 [Vitis vinifera]2.3e-2044.7Show/hide
Query:  RSQVTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLW---DDVPSEIRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIE
        RS+++L++++KA++ EK GFL+ELN ++    + E       +VP  ++ V    + +  +   L P R  +HAI L  G+ P+ VRPYR+ QFQKDEIE
Subjt:  RSQVTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLW---DDVPSEIRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIE

Query:  KLVEKMLAVGIIQPSSSTFSRLILLVKKKDGS
        +L+ +ML  GII+PS+S FS  +LLVKKKDGS
Subjt:  KLVEKMLAVGIIQPSSSTFSRLILLVKKKDGS

XP_020251114.1 uncharacterized protein LOC109828557, partial [Asparagus officinalis]1.0e-2046.4Show/hide
Query:  VTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLWDDVPSEIRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIEKLVEKM
        V  K + K L+ ++QGF ++L  M   S   EG   D+P+E++ + +    + Q LP L P R++DH I L  GT PI +RPYRH  F KDEIEK VE M
Subjt:  VTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLWDDVPSEIRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIEKLVEKM

Query:  LAVGIIQPSSSTFSRLILLVKKKDG
        L  GII+PS+S FS  +++VKK DG
Subjt:  LAVGIIQPSSSTFSRLILLVKKKDG

TrEMBL top hitse value%identityAlignment
A0A2I0VE39 RNA-directed DNA polymerase2.1e-1938.67Show/hide
Query:  PYQISENHQVDGFNWSHRGYFLVDNGATHNFITLKLVQELELSL----SEIFRSQVTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLWDDVPSEIRSV
        P ++     + G  W      L D       +T++L+ E    +    + + +S V+LK++VK ++L   G+LVEL+ +++  V+ EG   D+P  I+ +
Subjt:  PYQISENHQVDGFNWSHRGYFLVDNGATHNFITLKLVQELELSL----SEIFRSQVTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLWDDVPSEIRSV

Query:  SEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIEKLVEKMLAVGIIQPSSSTFSRLILLVKKKDGS
         +    + Q    L P RE +HAI L  G +PI+VRPYR+ QFQKDEIE+L+ +ML   II+PS S FS  +LLVKKKDGS
Subjt:  SEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIEKLVEKMLAVGIIQPSSSTFSRLILLVKKKDGS

A0A438F372 Retrovirus-related Pol polyprotein from transposon 2976.6e-2145.31Show/hide
Query:  RSQVTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLWDDVPSEIRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIEKLV
        R++V+LK++ +AL+   QG  VEL      S  +EG+  +VP  ++ V   H  I + +  L P+R++DHAI+L+ G +P+NVRPYR+    K+EIE+LV
Subjt:  RSQVTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLWDDVPSEIRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIEKLV

Query:  EKMLAVGIIQPSSSTFSRLILLVKKKDG
        ++ML  GI++PS S+FS  +LLVKKKDG
Subjt:  EKMLAVGIIQPSSSTFSRLILLVKKKDG

A0A438F372 Retrovirus-related Pol polyprotein from transposon 2978.1e-0340Show/hide
Query:  DLWNFVGN-ISELVAQMEEEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKE
        D W F  N    +    EEE++ A  + LDG  L W+ W   +   GSWE  +R LL RF PT+E
Subjt:  DLWNFVGN-ISELVAQMEEEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKE

A0A438F372 Retrovirus-related Pol polyprotein from transposon 2971.1e-2045.86Show/hide
Query:  SEIFRSQVTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLWDDVPSEIRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEI
        S + ++ V+LKSL+K ++ E +G+LVEL+ ++  S +  G   D+P  ++ + +    + Q      P RE +HAI L  G +P+NVRPYR+ QFQKDEI
Subjt:  SEIFRSQVTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLWDDVPSEIRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEI

Query:  EKLVEKMLAVGIIQPSSSTFSRLILLVKKKDGS
        EKL+ +ML  GII+PS+S FS  +LLVKKKD S
Subjt:  EKLVEKMLAVGIIQPSSSTFSRLILLVKKKDGS

A0A5D3CU29 Peroxidase 649.5e-2033.18Show/hide
Query:  LVDNGATHNFITLKLVQELELSLSE------------------------------------------------------IFRSQVTLKSLVKALKLEKQG
        L+D GATHNFI  KLV E++L   E                                                      I +++V LK+L+KA     QG
Subjt:  LVDNGATHNFITLKLVQELELSLSE------------------------------------------------------IFRSQVTLKSLVKALKLEKQG

Query:  FLVELNVMQQHSVKNEGLWDD----VPSEIRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIEKLVEKMLAVGIIQPSSST
        +LVE   +Q   + +E + ++    VP++++++ +  + + +    L P R ++H I + LGT P+NVRPYR+   QK E+E+LV++ML+ GIIQPS+S 
Subjt:  FLVELNVMQQHSVKNEGLWDD----VPSEIRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIEKLVEKMLAVGIIQPSSST

Query:  FSRLILLVKKKDGS
        +S  +LLVKKKDGS
Subjt:  FSRLILLVKKKDGS

A5CAG1 Reverse transcriptase4.3e-2044.53Show/hide
Query:  RSQVTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLWDDVPSEIRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIEKLV
        R +V+LK++ +AL+   QG  VE       S  +EG+  +VP  ++ V   H  I + +  L P+R++DHAI+L+ G +P+NVRPYR+    K+EIE+LV
Subjt:  RSQVTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLWDDVPSEIRSVSEAHSSILQSLPILLPNRELDHAIELLLGTAPINVRPYRHHQFQKDEIEKLV

Query:  EKMLAVGIIQPSSSTFSRLILLVKKKDG
        ++ML  GI++PS S FS  +LLVKKKDG
Subjt:  EKMLAVGIIQPSSSTFSRLILLVKKKDG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACTCGAATGGAACCATTGGAAGCAAACATGGCGGATTTGTGGAATTTTGTTGGAAATATCTCTGAGCTGGTTGCACAGATGGAAGAGGAGCAAGTAGAAGCTAT
TGTTCTCTGTTTGGATGGAGTTGGGTTAAAATGGCATCATTGGGAGAAGCGTCAACGGTCGATTGGAAGTTGGGAGCAGTTTCGTCGCCTTCTTCTGCAACGTTTTCTTC
CGACTAAAGAAGACTACAGAGATGGCCAGCGAATGTCCGTTGGGAGAAAGACCGCCGAAAGAAGAAGTGGAGGTTGGACTGCATTCTATGGTCCATATCAAATCTCCGAA
AACCATCAAGTTGACGGGTTTAATTGGAGCCACAGAGGTTATTTTTTGGTTGACAATGGTGCTACACATAATTTCATTACTTTGAAGTTGGTTCAAGAGCTTGAATTGTC
GTTAAGTGAGATTTTTCGTTCCCAAGTAACTTTGAAGTCATTGGTTAAAGCTTTGAAGCTTGAAAAGCAGGGGTTTTTAGTTGAATTGAATGTGATGCAACAACATTCAG
TTAAGAATGAAGGGTTGTGGGATGATGTACCTTCTGAGATCAGATCTGTTTCGGAGGCTCACTCCTCTATTCTCCAGTCGCTACCTATTCTTCTACCAAATCGAGAGTTA
GATCATGCAATAGAGTTGCTTCTTGGAACAGCTCCAATAAATGTCAGACCATACAGGCATCACCAGTTTCAAAAAGATGAAATTGAAAAGCTAGTTGAAAAGATGTTAGC
TGTTGGCATCATTCAGCCTAGCTCGAGCACATTTTCCAGGCTTATTCTGTTGGTTAAGAAGAAAGATGGGAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTACTCGAATGGAACCATTGGAAGCAAACATGGCGGATTTGTGGAATTTTGTTGGAAATATCTCTGAGCTGGTTGCACAGATGGAAGAGGAGCAAGTAGAAGCTAT
TGTTCTCTGTTTGGATGGAGTTGGGTTAAAATGGCATCATTGGGAGAAGCGTCAACGGTCGATTGGAAGTTGGGAGCAGTTTCGTCGCCTTCTTCTGCAACGTTTTCTTC
CGACTAAAGAAGACTACAGAGATGGCCAGCGAATGTCCGTTGGGAGAAAGACCGCCGAAAGAAGAAGTGGAGGTTGGACTGCATTCTATGGTCCATATCAAATCTCCGAA
AACCATCAAGTTGACGGGTTTAATTGGAGCCACAGAGGTTATTTTTTGGTTGACAATGGTGCTACACATAATTTCATTACTTTGAAGTTGGTTCAAGAGCTTGAATTGTC
GTTAAGTGAGATTTTTCGTTCCCAAGTAACTTTGAAGTCATTGGTTAAAGCTTTGAAGCTTGAAAAGCAGGGGTTTTTAGTTGAATTGAATGTGATGCAACAACATTCAG
TTAAGAATGAAGGGTTGTGGGATGATGTACCTTCTGAGATCAGATCTGTTTCGGAGGCTCACTCCTCTATTCTCCAGTCGCTACCTATTCTTCTACCAAATCGAGAGTTA
GATCATGCAATAGAGTTGCTTCTTGGAACAGCTCCAATAAATGTCAGACCATACAGGCATCACCAGTTTCAAAAAGATGAAATTGAAAAGCTAGTTGAAAAGATGTTAGC
TGTTGGCATCATTCAGCCTAGCTCGAGCACATTTTCCAGGCTTATTCTGTTGGTTAAGAAGAAAGATGGGAGTTGA
Protein sequenceShow/hide protein sequence
MTTRMEPLEANMADLWNFVGNISELVAQMEEEQVEAIVLCLDGVGLKWHHWEKRQRSIGSWEQFRRLLLQRFLPTKEDYRDGQRMSVGRKTAERRSGGWTAFYGPYQISE
NHQVDGFNWSHRGYFLVDNGATHNFITLKLVQELELSLSEIFRSQVTLKSLVKALKLEKQGFLVELNVMQQHSVKNEGLWDDVPSEIRSVSEAHSSILQSLPILLPNREL
DHAIELLLGTAPINVRPYRHHQFQKDEIEKLVEKMLAVGIIQPSSSTFSRLILLVKKKDGS