; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0030791 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0030791
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr11:1431858..1432229
RNA-Seq ExpressionLag0030791
SyntenyLag0030791
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.1e-0935.92Show/hide
Query:  MDSSSTANALSETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRS---VPNPDYEAWVRQDNLITS
        M S+S+   +  T   S   +    G+K + VKL+++ FL WK Q+   L+ + L  F++ ++E   K++ S+E  S S    PNP Y+ W RQD LI+S
Subjt:  MDSSSTANALSETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRS---VPNPDYEAWVRQDNLITS

Query:  WFL
        W L
Subjt:  WFL

KAA0067213.1 keratin, type II cytoskeletal 1-like [Cucumis melo var. makuwa]6.8e-0934.95Show/hide
Query:  MDSSSTANALSETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRS---VPNPDYEAWVRQDNLITS
        M S+S+   +  T   S   +     +K + VKL ++NFL WK Q+   L+ + L  F++ ++E   K++ S+   S S    PNP Y+ W RQD LI+S
Subjt:  MDSSSTANALSETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRS---VPNPDYEAWVRQDNLITS

Query:  WFL
        W L
Subjt:  WFL

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.1e-0935.92Show/hide
Query:  MDSSSTANALSETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRS---VPNPDYEAWVRQDNLITS
        M S+S+   +  T   S   +    G+K + VKL+++ FL WK Q+   L+ + L  F++ ++E   K++ S+E  S S    PNP Y+ W RQD LI+S
Subjt:  MDSSSTANALSETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRS---VPNPDYEAWVRQDNLITS

Query:  WFL
        W L
Subjt:  WFL

XP_022154487.1 uncharacterized protein LOC111021757 [Momordica charantia]1.9e-1143.02Show/hide
Query:  QFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRS---VPNPDYEAWVRQDNLITSWFL
        Q  K IN GSK + V+L+++N L WK Q++  LQG+GL  +ID + +   +FVQ++E+ S S     NP Y  W++QD LI++W L
Subjt:  QFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRS---VPNPDYEAWVRQDNLITSWFL

XP_022159146.1 uncharacterized protein LOC111025572 [Momordica charantia]8.9e-1748.35Show/hide
Query:  SETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSR-SVPNPDYEAWVRQDNLITSWFL
        +++ + +Q    +N G+K +T+KL++ENFL W++Q+   LQGHGLG+FID +A+I  +FVQS++E S    PNP++  W RQD LITSW L
Subjt:  SETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSR-SVPNPDYEAWVRQDNLITSWFL

TrEMBL top hitse value%identityAlignment
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-945.1e-1035.92Show/hide
Query:  MDSSSTANALSETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRS---VPNPDYEAWVRQDNLITS
        M S+S+   +  T   S   +    G+K + VKL+++ FL WK Q+   L+ + L  F++ ++E   K++ S+E  S S    PNP Y+ W RQD LI+S
Subjt:  MDSSSTANALSETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRS---VPNPDYEAWVRQDNLITS

Query:  WFL
        W L
Subjt:  WFL

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-945.1e-1035.92Show/hide
Query:  MDSSSTANALSETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRS---VPNPDYEAWVRQDNLITS
        M S+S+   +  T   S   +    G+K + VKL+++ FL WK Q+   L+ + L  F++ ++E   K++ S+E  S S    PNP Y+ W RQD LI+S
Subjt:  MDSSSTANALSETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRS---VPNPDYEAWVRQDNLITS

Query:  WFL
        W L
Subjt:  WFL

A0A5D3D5T2 Keratin, type II cytoskeletal 1-like3.3e-0934.95Show/hide
Query:  MDSSSTANALSETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRS---VPNPDYEAWVRQDNLITS
        M S+S+   +  T   S   +     +K + VKL ++NFL WK Q+   L+ + L  F++ ++E   K++ S+   S S    PNP Y+ W RQD LI+S
Subjt:  MDSSSTANALSETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRS---VPNPDYEAWVRQDNLITS

Query:  WFL
        W L
Subjt:  WFL

A0A6J1DLT9 uncharacterized protein LOC1110217579.3e-1243.02Show/hide
Query:  QFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRS---VPNPDYEAWVRQDNLITSWFL
        Q  K IN GSK + V+L+++N L WK Q++  LQG+GL  +ID + +   +FVQ++E+ S S     NP Y  W++QD LI++W L
Subjt:  QFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRS---VPNPDYEAWVRQDNLITSWFL

A0A6J1E314 uncharacterized protein LOC1110255724.3e-1748.35Show/hide
Query:  SETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSR-SVPNPDYEAWVRQDNLITSWFL
        +++ + +Q    +N G+K +T+KL++ENFL W++Q+   LQGHGLG+FID +A+I  +FVQS++E S    PNP++  W RQD LITSW L
Subjt:  SETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSR-SVPNPDYEAWVRQDNLITSWFL

SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE12.5e-0636.36Show/hide
Query:  TNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRSVPNPDYEAWVRQDNLITSWFLAPCQM
        +N  KL   N+L W  QV A+  G+ L  F+D    + P  + +   P     NPDY  W RQD LI S  L    M
Subjt:  TNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRSVPNPDYEAWVRQDNLITSWFLAPCQM

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.3e-0636.36Show/hide
Query:  TNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRSVPNPDYEAWVRQDNLITSWFLAPCQM
        +N  KL   N+L W  QV A+  G+ L  F+D    + P  + +   P     NPDY  W RQD LI S  L    M
Subjt:  TNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRSVPNPDYEAWVRQDNLITSWFLAPCQM

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCTTCGTCTACTGCTAATGCCTTGTCTGAAACCTTCATCCCCTCACAATTTCAGAAACCCATCAATCTTGGAAGCAAGACGAACACTGTCAAATTGGATGAAGA
AAACTTCCTTTATTGGAAAATACAGGTCCAAGCGGTTCTTCAAGGACATGGCCTTGGGCGATTTATTGATGAAGATGCAGAAATTCATCCTAAATTTGTTCAGTCCAGTG
AAGAGCCTTCTCGTTCTGTTCCGAATCCGGATTATGAAGCTTGGGTTCGACAAGATAACCTAATTACTTCTTGGTTCTTGGCTCCATGTCAAATGAAGTCCTTTCTGAAG
TTCTTGATTGTGAAACCTTTCGTGAAATCTAAAAAATCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCTTCGTCTACTGCTAATGCCTTGTCTGAAACCTTCATCCCCTCACAATTTCAGAAACCCATCAATCTTGGAAGCAAGACGAACACTGTCAAATTGGATGAAGA
AAACTTCCTTTATTGGAAAATACAGGTCCAAGCGGTTCTTCAAGGACATGGCCTTGGGCGATTTATTGATGAAGATGCAGAAATTCATCCTAAATTTGTTCAGTCCAGTG
AAGAGCCTTCTCGTTCTGTTCCGAATCCGGATTATGAAGCTTGGGTTCGACAAGATAACCTAATTACTTCTTGGTTCTTGGCTCCATGTCAAATGAAGTCCTTTCTGAAG
TTCTTGATTGTGAAACCTTTCGTGAAATCTAAAAAATCCTGA
Protein sequenceShow/hide protein sequence
MDSSSTANALSETFIPSQFQKPINLGSKTNTVKLDEENFLYWKIQVQAVLQGHGLGRFIDEDAEIHPKFVQSSEEPSRSVPNPDYEAWVRQDNLITSWFLAPCQMKSFLK
FLIVKPFVKSKKS