; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0030817 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0030817
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr11:1699108..1700046
RNA-Seq ExpressionLag0030817
SyntenyLag0030817
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]3.1e-0850.91Show/hide
Query:  KLNTDATWNETQGKRGMGWIVHDSEGSLICFRMQQIHRNWSVKLLEAKAILEALK
        KLN+ A+W+E  GK G+ W++HDS GS IC   +++ R W VK+LE KA++E LK
Subjt:  KLNTDATWNETQGKRGMGWIVHDSEGSLICFRMQQIHRNWSVKLLEAKAILEALK
TrEMBL top hitse value%identityAlignment
A0A6D2KM87 RNase H domain-containing protein5.0e-0427.73Show/hide
Query:  VEDMDVWQ--------------QKCSQKNWEPQLNGRSQGKLNTDATWNETQGKRGMGWIVHDSEGSLICFRMQQIHRNWSVKLLEAKAILEALKMISDI
        VED + W+              ++ S+  W P  +G  Q K NTD +W++ Q K G+GWI+ D  G++I    +  HR  S    E +A+  A+  ++ +
Subjt:  VEDMDVWQ--------------QKCSQKNWEPQLNGRSQGKLNTDATWNETQGKRGMGWIVHDSEGSLICFRMQQIHRNWSVKLLEAKAILEALKMISDI

Query:  CNQRSIFLKVESDALEVIN
          ++  F    S A  ++N
Subjt:  CNQRSIFLKVESDALEVIN
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein5.9e-0532.1Show/hide
Query:  KLNTDATWNETQGKRGMGWIVHDSEGSLICFRMQQIHRNWSVKLLEAKAILEALKMISDICNQRSIFLKVESDALEVINII
        K NTDATW     + G+GWI+ +  G ++    + + R  +V   E +A+  A+  +S    +R IF   ESDA  ++N++
Subjt:  KLNTDATWNETQGKRGMGWIVHDSEGSLICFRMQQIHRNWSVKLLEAKAILEALKMISDICNQRSIFLKVESDALEVINII

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTCTCAAACTTATAACAATTTAGTCCTTATCGGCACGGTGGACAACCAAAGACTTTTGGTGGTGGATGGAGGACAACCTCAGCAAAAAGGAAATGTCCATTGGAG
CCAATATTTTGTGGAAGATATGGATGTTTGGCAACAAAAGTGCAGCCAGAAGAATTGGGAGCCTCAGCTCAATGGGAGAAGTCAAGGGAAATTAAACACCGACGCGACCT
GGAACGAGACGCAAGGAAAAAGAGGCATGGGCTGGATTGTGCATGACTCGGAAGGATCCCTCATCTGCTTCAGAATGCAACAAATTCATAGAAACTGGTCAGTGAAATTA
CTGGAAGCAAAAGCAATTCTTGAGGCGTTAAAGATGATTTCTGATATCTGCAATCAGCGATCCATCTTCCTCAAAGTAGAATCTGATGCCCTTGAAGTTATCAATATCAT
TATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTACTCTCAAACTTATAACAATTTAGTCCTTATCGGCACGGTGGACAACCAAAGACTTTTGGTGGTGGATGGAGGACAACCTCAGCAAAAAGGAAATGTCCATTGGAG
CCAATATTTTGTGGAAGATATGGATGTTTGGCAACAAAAGTGCAGCCAGAAGAATTGGGAGCCTCAGCTCAATGGGAGAAGTCAAGGGAAATTAAACACCGACGCGACCT
GGAACGAGACGCAAGGAAAAAGAGGCATGGGCTGGATTGTGCATGACTCGGAAGGATCCCTCATCTGCTTCAGAATGCAACAAATTCATAGAAACTGGTCAGTGAAATTA
CTGGAAGCAAAAGCAATTCTTGAGGCGTTAAAGATGATTTCTGATATCTGCAATCAGCGATCCATCTTCCTCAAAGTAGAATCTGATGCCCTTGAAGTTATCAATATCAT
TATCTGA
Protein sequenceShow/hide protein sequence
MYSQTYNNLVLIGTVDNQRLLVVDGGQPQQKGNVHWSQYFVEDMDVWQQKCSQKNWEPQLNGRSQGKLNTDATWNETQGKRGMGWIVHDSEGSLICFRMQQIHRNWSVKL
LEAKAILEALKMISDICNQRSIFLKVESDALEVINIII