; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0030835 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0030835
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr11:1888121..1888652
RNA-Seq ExpressionLag0030835
SyntenyLag0030835
Gene Ontology termsGO:0110165 - cellular anatomical structure (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN62051.1 hypothetical protein VITISV_016641 [Vitis vinifera]3.3e-0737.18Show/hide
Query:  YSILINGR-------PRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK
        Y++L+NG         + N+ G+N+ Q  +  LA+   CK   W   YLGLPLGGNPK + FW  + E +  +L  W+
Subjt:  YSILINGR-------PRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK

CAN69126.1 hypothetical protein VITISV_008195 [Vitis vinifera]1.5e-0735.45Show/hide
Query:  LREGDENGVFLM---------RSFKKKEANIYGDYSILINGRPRVNLP-----GVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGE
        LR+GD    FL             K +E N+   + +  N R RVNL      G+N+ Q  +  LA+   CK   W   YLGLPLGGNPK + FW  + E
Subjt:  LREGDENGVFLM---------RSFKKKEANIYGDYSILINGRPRVNLP-----GVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGE

Query:  TLHHKLHHWK
         +  +L  W+
Subjt:  TLHHKLHHWK

CAN82685.1 hypothetical protein VITISV_000485 [Vitis vinifera]6.7e-0841.33Show/hide
Query:  IYGDYSILINGRPRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK
        ++G  S L     +  + G+N  Q  +  LA  F C+   W  SYLGLPLGGNPKT  FW L+ E +  +L  WK
Subjt:  IYGDYSILINGRPRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK

XP_009335445.1 PREDICTED: uncharacterized protein LOC103928158 [Pyrus x bretschneideri]5.2e-0839.47Show/hide
Query:  NIYGDYSILINGRPRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK
        N++   S L   + + ++ G+N     ++G+A S+GC+ GSW   YLGLPLGG PK  MFW  + E +  +L  WK
Subjt:  NIYGDYSILINGRPRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK

XP_038891595.1 uncharacterized protein LOC120080986 [Benincasa hispida]7.5e-0749.15Show/hide
Query:  LPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK
        L G++V   + + L  SFG K      +YLGLPLGGNP    FWQL+ E + HKLH+WK
Subjt:  LPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK

TrEMBL top hitse value%identityAlignment
A0A438DVQ8 LINE-1 retrotransposable element ORF2 protein4.7e-0740Show/hide
Query:  IYGDYSILINGRPRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK
        ++G  S L     +  + G+N  Q  +  LA  F C+   W  SYLGLPLGGNPKT  FW  + E +  +L  WK
Subjt:  IYGDYSILINGRPRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK

A0A438FWU5 LINE-1 retrotransposable element ORF2 protein4.7e-0740Show/hide
Query:  IYGDYSILINGRPRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK
        ++G  S L     +  + G+N  Q  +  LA  F C+   W  SYLGLPLGGNPKT  FW  + E +  +L  WK
Subjt:  IYGDYSILINGRPRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK

A5AK27 Reverse transcriptase domain-containing protein7.3e-0835.45Show/hide
Query:  LREGDENGVFLM---------RSFKKKEANIYGDYSILINGRPRVNLP-----GVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGE
        LR+GD    FL             K +E N+   + +  N R RVNL      G+N+ Q  +  LA+   CK   W   YLGLPLGGNPK + FW  + E
Subjt:  LREGDENGVFLM---------RSFKKKEANIYGDYSILINGRPRVNLP-----GVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGE

Query:  TLHHKLHHWK
         +  +L  W+
Subjt:  TLHHKLHHWK

A5AY60 Reverse transcriptase domain-containing protein3.3e-0841.33Show/hide
Query:  IYGDYSILINGRPRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK
        ++G  S L     +  + G+N  Q  +  LA  F C+   W  SYLGLPLGGNPKT  FW L+ E +  +L  WK
Subjt:  IYGDYSILINGRPRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK

A5C377 Uncharacterized protein1.6e-0737.18Show/hide
Query:  YSILINGR-------PRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK
        Y++L+NG         + N+ G+N+ Q  +  LA+   CK   W   YLGLPLGGNPK + FW  + E +  +L  W+
Subjt:  YSILINGR-------PRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATGCATTCATTGGAGGCAAATATGCAAACCACAGTGGCTCAGGGAGGGGGATGAAAATGGGGTTTTCTTGATGCGGTCTTTCAAGAAAAAGGAGGCCAACATATA
TGGAGATTATTCAATACTGATTAATGGGAGACCACGAGTAAATCTCCCTGGTGTTAATGTTCCACAACTAGACATCGAAGGTTTGGCTATAAGCTTTGGCTGCAAAAATG
GTTCCTGGTCATCTTCTTATTTGGGACTTCCGTTGGGTGGCAATCCAAAAACAGCAATGTTTTGGCAACTAATTGGGGAAACACTTCATCACAAGTTGCATCACTGGAAG
TAG
mRNA sequenceShow/hide mRNA sequence
ATGGAATGCATTCATTGGAGGCAAATATGCAAACCACAGTGGCTCAGGGAGGGGGATGAAAATGGGGTTTTCTTGATGCGGTCTTTCAAGAAAAAGGAGGCCAACATATA
TGGAGATTATTCAATACTGATTAATGGGAGACCACGAGTAAATCTCCCTGGTGTTAATGTTCCACAACTAGACATCGAAGGTTTGGCTATAAGCTTTGGCTGCAAAAATG
GTTCCTGGTCATCTTCTTATTTGGGACTTCCGTTGGGTGGCAATCCAAAAACAGCAATGTTTTGGCAACTAATTGGGGAAACACTTCATCACAAGTTGCATCACTGGAAG
TAG
Protein sequenceShow/hide protein sequence
MECIHWRQICKPQWLREGDENGVFLMRSFKKKEANIYGDYSILINGRPRVNLPGVNVPQLDIEGLAISFGCKNGSWSSSYLGLPLGGNPKTAMFWQLIGETLHHKLHHWK