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Lag0030846 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0030846
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr11:2041470..2042491
RNA-Seq ExpressionLag0030846
SyntenyLag0030846
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033701.1 gypsy/ty3 element polyprotein [Cucumis melo var. makuwa]1.3e-1937.82Show/hide
Query:  RRRLENEEANDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYF-----------------------EKGSLGARRLAVKQEGIVVK
        +R++  E+  D +   E SL  E G+  DR KF KL+MP+F   +P+ W + AE YF                       E G+  AR LA+KQEG V +
Subjt:  RRRLENEEANDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYF-----------------------EKGSLGARRLAVKQEGIVVK

Query:  FQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED
        + ++FE  S PLP++ +DVL   F+NG++P IR E+ + R VGL+D+M  A+L E+
Subjt:  FQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED

KAA0037917.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.3e-1733.87Show/hide
Query:  RRRLENEEA-NDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYFEK----------------------------------------
        +R++ NEE   ++    E SL  E G    R KF KL+MP+F   +P  WF+ AE YF+                                         
Subjt:  RRRLENEEA-NDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYFEK----------------------------------------

Query:  ------------GSLGARRLAVKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED
                    G+  AR LA+KQEG V ++ +KFE  S PLP++ ++VLE TF NG++P IR E+ S R VGL+D+M+ AQL E+
Subjt:  ------------GSLGARRLAVKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED

KAA0057084.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-1733.87Show/hide
Query:  RRRLENEE-ANDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYF------------------------------------------
        +R++ NEE   ++    E SL  E G+  +R KF KL+MP+F   +P  WF+ AE YF                                          
Subjt:  RRRLENEE-ANDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYF------------------------------------------

Query:  ----------EKGSLGARRLAVKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED
                  E G+  AR LA+KQEG + ++ +KFE  S PLP++ K+VL+ TF NG++P IR E+ S R VGL+D+M+ AQL E+
Subjt:  ----------EKGSLGARRLAVKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED

TYK03081.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.6e-1834.2Show/hide
Query:  LFGILCRRRLENEEAN--DKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYFEK---------------------------------
        L GI  R+R E  EA   ++    E SL  E G   +R KF KL+MP+F   +P  WF+ AE YF+                                  
Subjt:  LFGILCRRRLENEEAN--DKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYFEK---------------------------------

Query:  -------------------GSLGARRLAVKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED
                           G+  AR LA+KQEG V ++ +KFE  S  LP++ ++VLE TF NG++P IR E+ S R VGL+D+M+ AQL E+
Subjt:  -------------------GSLGARRLAVKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED

TYK18994.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.3e-1834.41Show/hide
Query:  RRRLENEEA-NDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYFEK----------------------------------------
        +R++ NEE   ++    E SL  E G    R KF KL+MP+F   +P  WF+ AE YF+                                         
Subjt:  RRRLENEEA-NDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYFEK----------------------------------------

Query:  ------------GSLGARRLAVKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED
                    G+  AR LA+KQEG V ++ +KFE  S PLP++ ++VLE TF NG++P IR E+ S R VGLKD+M+ AQL E+
Subjt:  ------------GSLGARRLAVKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED

TrEMBL top hitse value%identityAlignment
A0A5A7SW87 Gypsy/ty3 element polyprotein6.5e-2037.82Show/hide
Query:  RRRLENEEANDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYF-----------------------EKGSLGARRLAVKQEGIVVK
        +R++  E+  D +   E SL  E G+  DR KF KL+MP+F   +P+ W + AE YF                       E G+  AR LA+KQEG V +
Subjt:  RRRLENEEANDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYF-----------------------EKGSLGARRLAVKQEGIVVK

Query:  FQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED
        + ++FE  S PLP++ +DVL   F+NG++P IR E+ + R VGL+D+M  A+L E+
Subjt:  FQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED

A0A5A7T8L1 Ty3-gypsy retrotransposon protein6.1e-1833.87Show/hide
Query:  RRRLENEEA-NDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYFEK----------------------------------------
        +R++ NEE   ++    E SL  E G    R KF KL+MP+F   +P  WF+ AE YF+                                         
Subjt:  RRRLENEEA-NDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYFEK----------------------------------------

Query:  ------------GSLGARRLAVKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED
                    G+  AR LA+KQEG V ++ +KFE  S PLP++ ++VLE TF NG++P IR E+ S R VGL+D+M+ AQL E+
Subjt:  ------------GSLGARRLAVKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED

A0A5A7UPF5 Ty3-gypsy retrotransposon protein7.9e-1833.87Show/hide
Query:  RRRLENEE-ANDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYF------------------------------------------
        +R++ NEE   ++    E SL  E G+  +R KF KL+MP+F   +P  WF+ AE YF                                          
Subjt:  RRRLENEE-ANDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYF------------------------------------------

Query:  ----------EKGSLGARRLAVKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED
                  E G+  AR LA+KQEG + ++ +KFE  S PLP++ K+VL+ TF NG++P IR E+ S R VGL+D+M+ AQL E+
Subjt:  ----------EKGSLGARRLAVKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED

A0A5D3BTN5 Ty3-gypsy retrotransposon protein4.7e-1834.2Show/hide
Query:  LFGILCRRRLENEEAN--DKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYFEK---------------------------------
        L GI  R+R E  EA   ++    E SL  E G   +R KF KL+MP+F   +P  WF+ AE YF+                                  
Subjt:  LFGILCRRRLENEEAN--DKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYFEK---------------------------------

Query:  -------------------GSLGARRLAVKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED
                           G+  AR LA+KQEG V ++ +KFE  S  LP++ ++VLE TF NG++P IR E+ S R VGL+D+M+ AQL E+
Subjt:  -------------------GSLGARRLAVKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED

A0A5D3D605 Ty3-gypsy retrotransposon protein2.1e-1834.41Show/hide
Query:  RRRLENEEA-NDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYFEK----------------------------------------
        +R++ NEE   ++    E SL  E G    R KF KL+MP+F   +P  WF+ AE YF+                                         
Subjt:  RRRLENEEA-NDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYFEK----------------------------------------

Query:  ------------GSLGARRLAVKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED
                    G+  AR LA+KQEG V ++ +KFE  S PLP++ ++VLE TF NG++P IR E+ S R VGLKD+M+ AQL E+
Subjt:  ------------GSLGARRLAVKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G42723.1 aminoacyl-tRNA ligases;ATP binding;nucleotide binding8.4e-0429.17Show/hide
Query:  VKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVEDHDLTIGY
        ++QEG V +++++FE        LP   LE  FL G+ P+++  +   +P G+  +M  AQ +E+ +  + Y
Subjt:  VKQEGIVVKFQKKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVEDHDLTIGY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAATCATAACCCAATTCATGGAAGAAATATCAATAGCAGTGTGGGATTTAGTAGATATTGGTATTTGTGTATTGTTTGGTATTCTGTGCAGGCGAAGGCTCGAGAA
TGAAGAAGCCAATGATAAGAACGTAGGAAGTGAAATCAGTCTAGACAAAGAAGGAGGTTCAAACGGGGATCGAAGCAAGTTTATGAAACTGAAAATGCCTATCTTCCCGA
GGACAAACCCAAACTCGTGGTTTTTTTGGGCGGAAAGATACTTCGAGAAAGGAAGTTTAGGCGCAAGGCGTTTGGCTGTTAAGCAAGAAGGTATTGTCGTGAAATTCCAG
AAGAAATTCGAGATATACTCGACACCATTGCCAAAGTTGCCGAAAGATGTACTCGAGAATACATTCCTAAATGGGATAAACCCTACGATTAGGATAGAATTGGTAAGTAG
CCGACCGGTTGGGCTCAAAGACATAATGAAAGAGGCCCAATTAGTTGAGGACCATGATTTGACTATTGGCTATTGTACAAATGGGCTCAAGATCATCGGGAGAACTGGGG
AAGTGAACCACTTCAAACACAATCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAATCATAACCCAATTCATGGAAGAAATATCAATAGCAGTGTGGGATTTAGTAGATATTGGTATTTGTGTATTGTTTGGTATTCTGTGCAGGCGAAGGCTCGAGAA
TGAAGAAGCCAATGATAAGAACGTAGGAAGTGAAATCAGTCTAGACAAAGAAGGAGGTTCAAACGGGGATCGAAGCAAGTTTATGAAACTGAAAATGCCTATCTTCCCGA
GGACAAACCCAAACTCGTGGTTTTTTTGGGCGGAAAGATACTTCGAGAAAGGAAGTTTAGGCGCAAGGCGTTTGGCTGTTAAGCAAGAAGGTATTGTCGTGAAATTCCAG
AAGAAATTCGAGATATACTCGACACCATTGCCAAAGTTGCCGAAAGATGTACTCGAGAATACATTCCTAAATGGGATAAACCCTACGATTAGGATAGAATTGGTAAGTAG
CCGACCGGTTGGGCTCAAAGACATAATGAAAGAGGCCCAATTAGTTGAGGACCATGATTTGACTATTGGCTATTGTACAAATGGGCTCAAGATCATCGGGAGAACTGGGG
AAGTGAACCACTTCAAACACAATCAATAA
Protein sequenceShow/hide protein sequence
MQIITQFMEEISIAVWDLVDIGICVLFGILCRRRLENEEANDKNVGSEISLDKEGGSNGDRSKFMKLKMPIFPRTNPNSWFFWAERYFEKGSLGARRLAVKQEGIVVKFQ
KKFEIYSTPLPKLPKDVLENTFLNGINPTIRIELVSSRPVGLKDIMKEAQLVEDHDLTIGYCTNGLKIIGRTGEVNHFKHNQ