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Lag0030974 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0030974
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr11:3431928..3432362
RNA-Seq ExpressionLag0030974
SyntenyLag0030974
Gene Ontology termsNA
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.2e-3455.86Show/hide
Query:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNG-ISISHLLFADDILLFFRDD
        ML  KG+   W  W++  IS+V YSI+ NG+PRGKIQ SRGIRQGDPISPFIFV+AM+Y+SRL+ +V  K  I+G  L G I+++HLLFADDILLF  DD
Subjt:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNG-ISISHLLFADDILLFFRDD

Query:  DDFLENYFMIIKAFEQASGLNINFTKSSISGINVSEDSVSLVASR
        +  ++N   II  F+ ASGL+IN  KS+IS INV       +AS+
Subjt:  DDFLENYFMIIKAFEQASGLNINFTKSSISGINVSEDSVSLVASR

KAA0051609.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.5e-3453.85Show/hide
Query:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNGISISHLLFADDILLFFRDDD
        ML+ K  S  W  W+K  ISTV YSIL NGKPRG+I+  RGIRQGDPIS  IFV+AM+YLS +++ +EN + I+G  +N I++ HLLFA+DILLF  DDD
Subjt:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNGISISHLLFADDILLFFRDDD

Query:  DFLENYFMIIKAFEQASGLNINFTKSSISGINVSEDSVSLVAS
        + + N    I  FE ASGLNI+ +KSSIS +N+ ++ +  VA+
Subjt:  DFLENYFMIIKAFEQASGLNINFTKSSISGINVSEDSVSLVAS

TYJ99315.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.2e-3455.56Show/hide
Query:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNG-ISISHLLFADDILLFFRDD
        +L  K F N W  W++  IS V+YS++ NG+P+G+I+A+RG+RQGDP+SPF+FVIAM+YLSRL+  +E+   I+G SLNG  +ISH+LFADDILLF  D+
Subjt:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNG-ISISHLLFADDILLFFRDD

Query:  DDFLENYFMIIKAFEQASGLNINFTKSSISGINVS
        D FL+N  M +  FE+ASGL IN  KS++  +NVS
Subjt:  DDFLENYFMIIKAFEQASGLNINFTKSSISGINVS

TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.2e-3455.86Show/hide
Query:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNG-ISISHLLFADDILLFFRDD
        ML  KG+   W  W++  IS+V YSI+ NG+PRGKIQ SRGIRQGDPISPFIFV+AM+Y+SRL+ +V  K  I+G  L G I+++HLLFADDILLF  DD
Subjt:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNG-ISISHLLFADDILLFFRDD

Query:  DDFLENYFMIIKAFEQASGLNINFTKSSISGINVSEDSVSLVASR
        +  ++N   II  F+ ASGL+IN  KS+IS INV       +AS+
Subjt:  DDFLENYFMIIKAFEQASGLNINFTKSSISGINVSEDSVSLVASR

XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]3.2e-3455.86Show/hide
Query:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNG-ISISHLLFADDILLFFRDD
        ML  KG+   W  W++  IS+V YSI+ NG+PRGKIQ SRGIRQGDPISPFIFV+AM+Y+SRL+ +V  K  I+G  L G I+++HLLFADDILLF  DD
Subjt:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNG-ISISHLLFADDILLFFRDD

Query:  DDFLENYFMIIKAFEQASGLNINFTKSSISGINVSEDSVSLVASR
        +  ++N   II  F+ ASGL+IN  KS+IS INV       +AS+
Subjt:  DDFLENYFMIIKAFEQASGLNINFTKSSISGINVSEDSVSLVASR

TrEMBL top hitse value%identityAlignment
A0A1S4E2K5 LINE-1 retrotransposable element ORF2 protein1.6e-3455.86Show/hide
Query:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNG-ISISHLLFADDILLFFRDD
        ML  KG+   W  W++  IS+V YSI+ NG+PRGKIQ SRGIRQGDPISPFIFV+AM+Y+SRL+ +V  K  I+G  L G I+++HLLFADDILLF  DD
Subjt:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNG-ISISHLLFADDILLFFRDD

Query:  DDFLENYFMIIKAFEQASGLNINFTKSSISGINVSEDSVSLVASR
        +  ++N   II  F+ ASGL+IN  KS+IS INV       +AS+
Subjt:  DDFLENYFMIIKAFEQASGLNINFTKSSISGINVSEDSVSLVASR

A0A5D3BLV7 LINE-1 retrotransposable element ORF2 protein2.0e-3455.56Show/hide
Query:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNG-ISISHLLFADDILLFFRDD
        +L  K F N W  W++  IS V+YS++ NG+P+G+I+A+RG+RQGDP+SPF+FVIAM+YLSRL+  +E+   I+G SLNG  +ISH+LFADDILLF  D+
Subjt:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNG-ISISHLLFADDILLFFRDD

Query:  DDFLENYFMIIKAFEQASGLNINFTKSSISGINVS
        D FL+N  M +  FE+ASGL IN  KS++  +NVS
Subjt:  DDFLENYFMIIKAFEQASGLNINFTKSSISGINVS

A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein1.6e-3455.86Show/hide
Query:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNG-ISISHLLFADDILLFFRDD
        ML  KG+   W  W++  IS+V YSI+ NG+PRGKIQ SRGIRQGDPISPFIFV+AM+Y+SRL+ +V  K  I+G  L G I+++HLLFADDILLF  DD
Subjt:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNG-ISISHLLFADDILLFFRDD

Query:  DDFLENYFMIIKAFEQASGLNINFTKSSISGINVSEDSVSLVASR
        +  ++N   II  F+ ASGL+IN  KS+IS INV       +AS+
Subjt:  DDFLENYFMIIKAFEQASGLNINFTKSSISGINVSEDSVSLVASR

A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein1.6e-3455.86Show/hide
Query:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNG-ISISHLLFADDILLFFRDD
        ML  KG+   W  W++  IS+V YSI+ NG+PRGKIQ SRGIRQGDPISPFIFV+AM+Y+SRL+ +V  K  I+G  L G I+++HLLFADDILLF  DD
Subjt:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNG-ISISHLLFADDILLFFRDD

Query:  DDFLENYFMIIKAFEQASGLNINFTKSSISGINVSEDSVSLVASR
        +  ++N   II  F+ ASGL+IN  KS+IS INV       +AS+
Subjt:  DDFLENYFMIIKAFEQASGLNINFTKSSISGINVSEDSVSLVASR

A0A5D3E3T6 LINE-1 retrotransposable element ORF2 protein2.7e-3453.85Show/hide
Query:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNGISISHLLFADDILLFFRDDD
        ML+ K  S  W  W+K  ISTV YSIL NGKPRG+I+  RGIRQGDPIS  IFV+AM+YLS +++ +EN + I+G  +N I++ HLLFA+DILLF  DDD
Subjt:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNGISISHLLFADDILLFFRDDD

Query:  DFLENYFMIIKAFEQASGLNINFTKSSISGINVSEDSVSLVAS
        + + N    I  FE ASGLNI+ +KSSIS +N+ ++ +  VA+
Subjt:  DFLENYFMIIKAFEQASGLNINFTKSSISGINVSEDSVSLVAS

SwissProt top hitse value%identityAlignment
O00370 LINE-1 retrotransposable element ORF2 protein2.7e-0731.37Show/hide
Query:  SILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNGISISHLLFADDILLFFRDDDDFLENYFMIIKAFEQASGLNINFT
        +I+ NG+         G RQG P+SP +F I +  L+R   A+  +  I+G  L    +   LFADD++++  +     +N   +I  F + SG  IN  
Subjt:  SILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNGISISHLLFADDILLFFRDDDDFLENYFMIIKAFEQASGLNINFT

Query:  KS
        KS
Subjt:  KS

P08548 LINE-1 reverse transcriptase homolog2.7e-0728.1Show/hide
Query:  GFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNGISISHLLFADDILLFFRDDDDFLEN
        G   ++   ++   S  + +I+ NG          G RQG P+SP +F I M  L+    A+  +  I+G  +    I   LFADD++++  +  D    
Subjt:  GFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNGISISHLLFADDILLFFRDDDDFLEN

Query:  YFMIIKAFEQASGLNINFTKS
           +IK +   SG  IN  KS
Subjt:  YFMIIKAFEQASGLNINFTKS

P11369 LINE-1 retrotransposable element ORF2 protein1.6e-0726.98Show/hide
Query:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNGISISHLLFADDILLFFRDDD
        +L   G    +   +K   S    +I  NG+    I    G RQG P+SP++F I +  L+R   A+  +  I+G  +    +   L ADD++++  D  
Subjt:  MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNGISISHLLFADDILLFFRDDD

Query:  DFLENYFMIIKAFEQASGLNINFTKS
        +       +I +F +  G  IN  KS
Subjt:  DFLENYFMIIKAFEQASGLNINFTKS

P92555 Uncharacterized mitochondrial protein AtMg012501.7e-0943.28Show/hide
Query:  LFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEG--CSLNGISISHLLFADD
        + NG P+G +  SRG+RQGDP+SP++F++    LS L +  + +  + G   S N   I+HLLFADD
Subjt:  LFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEG--CSLNGISISHLLFADD

Q05118 Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment)3.9e-0630.22Show/hide
Query:  LRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYL-SRLIQAVENKDLIEGCSLNGISISHLLFADDILLFFRDDD
        +R  G  +    ++   I+    +I+  G+   KI    G++QGDP+SP +F I ++ L +RL        +   C      I+ L FADD+LL   D D
Subjt:  LRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYL-SRLIQAVENKDLIEGCSLNGISISHLLFADDILLFFRDDD

Query:  DFLENYFMIIKAFEQASGLNINFTK-SSISGINVSEDSV
          + N      A+ +  G+ +N  K +SIS   VS  SV
Subjt:  DFLENYFMIIKAFEQASGLNINFTK-SSISGINVSEDSV

Arabidopsis top hitse value%identityAlignment
ATMG01250.1 RNA-directed DNA polymerase (reverse transcriptase)1.2e-1043.28Show/hide
Query:  LFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEG--CSLNGISISHLLFADD
        + NG P+G +  SRG+RQGDP+SP++F++    LS L +  + +  + G   S N   I+HLLFADD
Subjt:  LFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEG--CSLNGISISHLLFADD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCGTTTTAAGGGTTTCTCGAACTCTTGGTGTGGCTGGGTGAAAGTTTATATTTCAACAGTTTCATATTCCATTTTGTTCAATGGCAAACCGAGAGGTAAAATTCA
GGCCTCCAGAGGAATTCGTCAGGGTGATCCTATTTCTCCTTTTATCTTCGTCATTGCCATGAATTATCTTAGTAGACTTATTCAAGCAGTAGAGAATAAGGATCTCATTG
AAGGTTGCTCCTTAAACGGGATATCCATCTCTCATCTCCTTTTCGCAGATGATATTCTTCTCTTCTTTCGAGATGATGATGATTTCTTGGAAAATTACTTCATGATCATC
AAGGCCTTTGAACAAGCTTCGGGCCTTAACATAAACTTTACGAAATCTTCCATCTCCGGTATCAATGTTTCAGAGGATAGTGTTTCTTTGGTTGCTTCGAGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTCGTTTTAAGGGTTTCTCGAACTCTTGGTGTGGCTGGGTGAAAGTTTATATTTCAACAGTTTCATATTCCATTTTGTTCAATGGCAAACCGAGAGGTAAAATTCA
GGCCTCCAGAGGAATTCGTCAGGGTGATCCTATTTCTCCTTTTATCTTCGTCATTGCCATGAATTATCTTAGTAGACTTATTCAAGCAGTAGAGAATAAGGATCTCATTG
AAGGTTGCTCCTTAAACGGGATATCCATCTCTCATCTCCTTTTCGCAGATGATATTCTTCTCTTCTTTCGAGATGATGATGATTTCTTGGAAAATTACTTCATGATCATC
AAGGCCTTTGAACAAGCTTCGGGCCTTAACATAAACTTTACGAAATCTTCCATCTCCGGTATCAATGTTTCAGAGGATAGTGTTTCTTTGGTTGCTTCGAGATAG
Protein sequenceShow/hide protein sequence
MLRFKGFSNSWCGWVKVYISTVSYSILFNGKPRGKIQASRGIRQGDPISPFIFVIAMNYLSRLIQAVENKDLIEGCSLNGISISHLLFADDILLFFRDDDDFLENYFMII
KAFEQASGLNINFTKSSISGINVSEDSVSLVASR