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Lag0030975 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0030975
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr11:3432982..3433641
RNA-Seq ExpressionLag0030975
SyntenyLag0030975
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045532.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.8e-2439.35Show/hide
Query:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF
        QS  + E W   S  W+  PR+PL +REQ  W SI  SLP+  ++       W P+    Y VASA    ++ SS  +     K + +LW++ IP+KC F
Subjt:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF

Query:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS
        FIWT+ H+ LNT D +Q+     SL PS C  C  ++E ++HLF+ CP A S+W+
Subjt:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS

KAA0056839.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.0e-2338.71Show/hide
Query:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF
        QS  + E W   S  W+  PR+PL +REQ  W SI  SLP+  ++       W P+    Y VASA    ++ SS  +     K + +LW++ IP+KC F
Subjt:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF

Query:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS
        FIWT+ H+ LNT D++Q+     SL PS C  C  ++E ++HLF+ CP A ++W+
Subjt:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS

KAA0057507.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.8e-2439.35Show/hide
Query:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF
        QS  + E W   S  W+  PR+PL +REQ  W SI  SLP+  ++       W P+    Y VASA    ++ SS  +     K + +LW++ IP+KC F
Subjt:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF

Query:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS
        FIWT+ H+ LNT D +Q+     SL PS C  C  ++E ++HLF+ CP A S+W+
Subjt:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.8e-2439.35Show/hide
Query:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF
        QS  + E W   S  W+  PR+PL +REQ  W SI  SLP+  ++       W P+    Y VASA    ++ SS  +     K + +LW++ IP+KC F
Subjt:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF

Query:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS
        FIWT+ H+ LNT D +Q+     SL PS C  C  ++E ++HLF+ CP A S+W+
Subjt:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS

TYK28859.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.8e-2439.35Show/hide
Query:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF
        QS  + E W   S  W+  PR+PL +REQ  W SI  SLP+  ++       W P+    Y VASA    ++ SS  +     K + +LW++ IP+KC F
Subjt:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF

Query:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS
        FIWT+ H+ LNT D +Q+     SL PS C  C  ++E ++HLF+ CP A S+W+
Subjt:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS

TrEMBL top hitse value%identityAlignment
A0A5A7TQA8 LINE-1 retrotransposable element ORF2 protein3.8e-2439.35Show/hide
Query:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF
        QS  + E W   S  W+  PR+PL +REQ  W SI  SLP+  ++       W P+    Y VASA    ++ SS  +     K + +LW++ IP+KC F
Subjt:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF

Query:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS
        FIWT+ H+ LNT D +Q+     SL PS C  C  ++E ++HLF+ CP A S+W+
Subjt:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein3.8e-2439.35Show/hide
Query:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF
        QS  + E W   S  W+  PR+PL +REQ  W SI  SLP+  ++       W P+    Y VASA    ++ SS  +     K + +LW++ IP+KC F
Subjt:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF

Query:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS
        FIWT+ H+ LNT D +Q+     SL PS C  C  ++E ++HLF+ CP A S+W+
Subjt:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS

A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein5.0e-2438.71Show/hide
Query:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF
        QS  + E W   S  W+  PR+PL +REQ  W SI  SLP+  ++       W P+    Y VASA    ++ SS  +     K + +LW++ IP+KC F
Subjt:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF

Query:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS
        FIWT+ H+ LNT D++Q+     SL PS C  C  ++E ++HLF+ CP A ++W+
Subjt:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS

A0A5D3CA17 LINE-1 retrotransposable element ORF2 protein3.8e-2439.35Show/hide
Query:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF
        QS  + E W   S  W+  PR+PL +REQ  W SI  SLP+  ++       W P+    Y VASA    ++ SS  +     K + +LW++ IP+KC F
Subjt:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF

Query:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS
        FIWT+ H+ LNT D +Q+     SL PS C  C  ++E ++HLF+ CP A S+W+
Subjt:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS

A0A5D3DZM5 LINE-1 retrotransposable element ORF2 protein3.8e-2439.35Show/hide
Query:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF
        QS  + E W   S  W+  PR+PL +REQ  W SI  SLP+  ++       W P+    Y VASA    ++ SS  +     K + +LW++ IP+KC F
Subjt:  QSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPKKCIF

Query:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS
        FIWT+ H+ LNT D +Q+     SL PS C  C  ++E ++HLF+ CP A S+W+
Subjt:  FIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGTCTTTTCCTCGCCTTTTTGCCCTTTCCTCCAGGCACAATCTTTTGATATCTCCGAGGCTTGGATCCCGTCATCTTCCTCTTGGTCCTTTTTCCCTCGCAAGCC
TTTGTTAGACCGTGAGCAGGTGGTCTGGCAATCTATTTCATCTTCTTTGCCAAAGCCTTCATCTTCAGACGACAAGGATTGTCTTCGATGGATTCCTAACTCACAAGGGC
ATTATTTGGTGGCGTCTGCTTGTCGAAAACTTTGGGAATCTTCATCATCTTTTAGGTTTCAGGTGGACTCTAAGATCATGTTGAATTTATGGCAAGCTCCGATTCCGAAA
AAATGCATATTCTTCATCTGGACAGTCTTCCACCGAAGCCTCAACACTGATGATCGCCTTCAAAGAATTTTTAAAGACTCTTCCTTGTTCCCAAGCCGTTGCTCTATGTG
CCACCGAAATTCTGAATGTTTGGATCACCTTTTCGTTCAATGCCCTATGGCATCAAGCATTTGGTCTCCTTTTTTTTTCCAATGCGCAGGTATCTCTTCACCCATCCCTT
GTCATGCTGATAGCCCTTTGCGCTCTAGTTTTTGGGAACAAGATTACCTCTCAGAAACGTTGCTGGATTCAAGCTTTTTCGGCAACGTCGTTTTGGATTATCTGGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCAGTCTTTTCCTCGCCTTTTTGCCCTTTCCTCCAGGCACAATCTTTTGATATCTCCGAGGCTTGGATCCCGTCATCTTCCTCTTGGTCCTTTTTCCCTCGCAAGCC
TTTGTTAGACCGTGAGCAGGTGGTCTGGCAATCTATTTCATCTTCTTTGCCAAAGCCTTCATCTTCAGACGACAAGGATTGTCTTCGATGGATTCCTAACTCACAAGGGC
ATTATTTGGTGGCGTCTGCTTGTCGAAAACTTTGGGAATCTTCATCATCTTTTAGGTTTCAGGTGGACTCTAAGATCATGTTGAATTTATGGCAAGCTCCGATTCCGAAA
AAATGCATATTCTTCATCTGGACAGTCTTCCACCGAAGCCTCAACACTGATGATCGCCTTCAAAGAATTTTTAAAGACTCTTCCTTGTTCCCAAGCCGTTGCTCTATGTG
CCACCGAAATTCTGAATGTTTGGATCACCTTTTCGTTCAATGCCCTATGGCATCAAGCATTTGGTCTCCTTTTTTTTTCCAATGCGCAGGTATCTCTTCACCCATCCCTT
GTCATGCTGATAGCCCTTTGCGCTCTAGTTTTTGGGAACAAGATTACCTCTCAGAAACGTTGCTGGATTCAAGCTTTTTCGGCAACGTCGTTTTGGATTATCTGGAATGA
Protein sequenceShow/hide protein sequence
MSVFSSPFCPFLQAQSFDISEAWIPSSSSWSFFPRKPLLDREQVVWQSISSSLPKPSSSDDKDCLRWIPNSQGHYLVASACRKLWESSSSFRFQVDSKIMLNLWQAPIPK
KCIFFIWTVFHRSLNTDDRLQRIFKDSSLFPSRCSMCHRNSECLDHLFVQCPMASSIWSPFFFQCAGISSPIPCHADSPLRSSFWEQDYLSETLLDSSFFGNVVLDYLE